ISHwa26

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 1570 bp

Ends


Left end : AGAAATGCAAGGTGAATACACCCGCCTTCCCGTGAGGAACGAGCGTTACGACCGGACGGTCGTAACCGAGCGACGAACAGGCGGGTGATGAAACCGACAT II struct. : No
Right end : TCACCGCGGGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTTCGGTGCCGTGGGATTCCTCCGCCTTCAGGCGGATGGAGGATGTCAA II struct. : Yes
Comments : There is an insertion in the Left End.

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GAGCAGAGAATTATTATGGGGTGTTCAA

DNA sequence

AGAAATGCAAGGTGAATACACCCGCCTTCCCGTGAGGAACGAGCGTTACGACCGGACGGTCGTAACCGAGCGACGAACAGGCGGGTGATGAAACCGACAT
GGGCGAGTCATATCTACACCACACTAACATGGCCGGATATTCCACGGTCTGACCACAAATTTTATAATAAATCAATTATACAGGCGTTTAGAATGCTGGA
AGTCCACCGCACCCATCAAGCGAACATCCGCAACCACAGTCAGGTTGCAGAGTCCCTTGACCGTCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCT
AACTACCACTCCCGCGAAGTCTGGGAAGAGACGGGCGATATTCCTGATCATGAGGAGTTAAAAGCCGAGTTGAAGACTCATCCAACCTACAAGGGATTGC
ACAGTCAATCCAGTCAGCGGGTTCTGGAGGAACTCGCTGAAGGCTTCAACTCGTGGTACGGCTCCGAAGACGACAGGGACAACCCACCGGGCTACCGCAA
AGAAAACTACTACGACGACGAGGGTCGTCGTGTCCACGAAGAACACCCACGCAGTACGGTGACGTGGAAGCAAAACGGATTCAAACACGATACGAAGAAC
AACCGTGTCCGCCTCTCTAAAGGCGCGAATCACAAAGAGCATCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAAACCCGCCCCGGCATCACGGTCG
AGAACATACAGCAGGTCAGATCCGTCTACGATCAGCACAAAGAGCGATGGGAACTCCATCTCGTCTGCAAAAACGAGATTGAGACACCTGACGCTCCCGG
CACCGAGACGGCGGGTATCGACCTTGGTATCAGCAACTTTGCCGCTGTCGCCTACAGCACCGAAGACGCTGACCTGTACCCCGGTAACCGCCTGAAACAA
GACGGCTACTACTTCCCGAAAGAGATTGCTACGTGCGACGACGCGGGTGGTAACCGAGCTACCAACTTACAGAAGAAGTGGTCAGAACGACGCACTCACT
TTTTCCACAGCCTTGCGAAACATATCGTTGAACGCTGCGTTGAGAACGGTGTCGGTCGCATCAACATCGGTGATTTGGAGGGTGTTCGAGAGGATGAAGA
CGGTAGCTCGAAAAACTGGGGCAAACATGGCAATCTTGACTTACATGGATGGGCGTTCGACCGATTCACCAGTATCCTCGAATACAAGGCGAAGGGTGAG
GGAATCAAGATCGTGGAAGTGGATGAGCGTGATACAAGCAAAGCGTGTTGTGTCTGCGGTCGGACAGACGAGAATCAACGTGTTGAACGCGGGCTGTACG
TCTGTGAGTCGTGCGATGCAGCGTTCAACGCTGATGTGAATGGGGCGGAGAACATCTGTTTCGACTTGAACCAAAGTAACTCCGAGTCTGCACCTGATTT
GGGTGGAGATAGGAGTACCGGCTGGTTAGCACAGCCATCAGTCTATCTTCATGACTTGTCCCACGGATTCTCACCGCGGGAACAAGTGGTAGACTGCAAA
CCCTAATATCCCAATCCAGCGGTTCGGTGCCGTGGGATTCCTCCGCCTTCAGGCGGATGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1314 bp437 aa1931506+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEVHRTHQANIRNHSQVAESLDRHGWSASKLWNVANYHSREVWEETGDIPDHEELKAELKTHPTYKGLHSQSSQRVLEELAEGFNSWYGSEDDRDNPPG
YRKENYYDDEGRRVHEEHPRSTVTWKQNGFKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGITVENIQQVRSVYDQHKERWELHLVCKNEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIATCDDAGGNRATNLQKKWSERRTHFFHSLAKHIVERCVENGVGRINIGDLEGVRE
DEDGSSKNWGKHGNLDLHGWAFDRFTSILEYKAKGEGIKIVEVDERDTSKACCVCGRTDENQRVERGLYVCESCDAAFNADVNGAENICFDLNQSNSESA
PDLGGDRSTGWLAQPSVYLHDLSHGFSPREQVVDCKP

 

Blast result :
Comments
ISHwa26 is 92% (TnpB) aa similar to ISNma19. In the genome, there is a MITE inserted in this sequence, the MITE was in silico deleted.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169