ISHwa26
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1570 bp
Ends
Left end : AGAAATGCAAGGTGAATACACCCGCCTTCCCGTGAGGAACGAGCGTTACGACCGGACGGTCGTAACCGAGCGACGAACAGGCGGGTGATGAAACCGACAT II struct. : No
Right end : TCACCGCGGGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTTCGGTGCCGTGGGATTCCTCCGCCTTCAGGCGGATGGAGGATGTCAA II struct. : Yes
Comments : There is an insertion in the Left End.
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GAGCAGAGAA | TTAT | TATGGGGTGT | TCAA |
DNA sequence
AGAAATGCAAGGTGAATACACCCGCCTTCCCGTGAGGAACGAGCGTTACGACCGGACGGTCGTAACCGAGCGACGAACAGGCGGGTGATGAAACCGACAT
GGGCGAGTCATATCTACACCACACTAACATGGCCGGATATTCCACGGTCTGACCACAAATTTTATAATAAATCAATTATACAGGCGTTTAGAATGCTGGA
AGTCCACCGCACCCATCAAGCGAACATCCGCAACCACAGTCAGGTTGCAGAGTCCCTTGACCGTCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCT
AACTACCACTCCCGCGAAGTCTGGGAAGAGACGGGCGATATTCCTGATCATGAGGAGTTAAAAGCCGAGTTGAAGACTCATCCAACCTACAAGGGATTGC
ACAGTCAATCCAGTCAGCGGGTTCTGGAGGAACTCGCTGAAGGCTTCAACTCGTGGTACGGCTCCGAAGACGACAGGGACAACCCACCGGGCTACCGCAA
AGAAAACTACTACGACGACGAGGGTCGTCGTGTCCACGAAGAACACCCACGCAGTACGGTGACGTGGAAGCAAAACGGATTCAAACACGATACGAAGAAC
AACCGTGTCCGCCTCTCTAAAGGCGCGAATCACAAAGAGCATCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAAACCCGCCCCGGCATCACGGTCG
AGAACATACAGCAGGTCAGATCCGTCTACGATCAGCACAAAGAGCGATGGGAACTCCATCTCGTCTGCAAAAACGAGATTGAGACACCTGACGCTCCCGG
CACCGAGACGGCGGGTATCGACCTTGGTATCAGCAACTTTGCCGCTGTCGCCTACAGCACCGAAGACGCTGACCTGTACCCCGGTAACCGCCTGAAACAA
GACGGCTACTACTTCCCGAAAGAGATTGCTACGTGCGACGACGCGGGTGGTAACCGAGCTACCAACTTACAGAAGAAGTGGTCAGAACGACGCACTCACT
TTTTCCACAGCCTTGCGAAACATATCGTTGAACGCTGCGTTGAGAACGGTGTCGGTCGCATCAACATCGGTGATTTGGAGGGTGTTCGAGAGGATGAAGA
CGGTAGCTCGAAAAACTGGGGCAAACATGGCAATCTTGACTTACATGGATGGGCGTTCGACCGATTCACCAGTATCCTCGAATACAAGGCGAAGGGTGAG
GGAATCAAGATCGTGGAAGTGGATGAGCGTGATACAAGCAAAGCGTGTTGTGTCTGCGGTCGGACAGACGAGAATCAACGTGTTGAACGCGGGCTGTACG
TCTGTGAGTCGTGCGATGCAGCGTTCAACGCTGATGTGAATGGGGCGGAGAACATCTGTTTCGACTTGAACCAAAGTAACTCCGAGTCTGCACCTGATTT
GGGTGGAGATAGGAGTACCGGCTGGTTAGCACAGCCATCAGTCTATCTTCATGACTTGTCCCACGGATTCTCACCGCGGGAACAAGTGGTAGACTGCAAA
CCCTAATATCCCAATCCAGCGGTTCGGTGCCGTGGGATTCCTCCGCCTTCAGGCGGATGGAGGATGTCAA
GGGCGAGTCATATCTACACCACACTAACATGGCCGGATATTCCACGGTCTGACCACAAATTTTATAATAAATCAATTATACAGGCGTTTAGAATGCTGGA
AGTCCACCGCACCCATCAAGCGAACATCCGCAACCACAGTCAGGTTGCAGAGTCCCTTGACCGTCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCT
AACTACCACTCCCGCGAAGTCTGGGAAGAGACGGGCGATATTCCTGATCATGAGGAGTTAAAAGCCGAGTTGAAGACTCATCCAACCTACAAGGGATTGC
ACAGTCAATCCAGTCAGCGGGTTCTGGAGGAACTCGCTGAAGGCTTCAACTCGTGGTACGGCTCCGAAGACGACAGGGACAACCCACCGGGCTACCGCAA
AGAAAACTACTACGACGACGAGGGTCGTCGTGTCCACGAAGAACACCCACGCAGTACGGTGACGTGGAAGCAAAACGGATTCAAACACGATACGAAGAAC
AACCGTGTCCGCCTCTCTAAAGGCGCGAATCACAAAGAGCATCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAAACCCGCCCCGGCATCACGGTCG
AGAACATACAGCAGGTCAGATCCGTCTACGATCAGCACAAAGAGCGATGGGAACTCCATCTCGTCTGCAAAAACGAGATTGAGACACCTGACGCTCCCGG
CACCGAGACGGCGGGTATCGACCTTGGTATCAGCAACTTTGCCGCTGTCGCCTACAGCACCGAAGACGCTGACCTGTACCCCGGTAACCGCCTGAAACAA
GACGGCTACTACTTCCCGAAAGAGATTGCTACGTGCGACGACGCGGGTGGTAACCGAGCTACCAACTTACAGAAGAAGTGGTCAGAACGACGCACTCACT
TTTTCCACAGCCTTGCGAAACATATCGTTGAACGCTGCGTTGAGAACGGTGTCGGTCGCATCAACATCGGTGATTTGGAGGGTGTTCGAGAGGATGAAGA
CGGTAGCTCGAAAAACTGGGGCAAACATGGCAATCTTGACTTACATGGATGGGCGTTCGACCGATTCACCAGTATCCTCGAATACAAGGCGAAGGGTGAG
GGAATCAAGATCGTGGAAGTGGATGAGCGTGATACAAGCAAAGCGTGTTGTGTCTGCGGTCGGACAGACGAGAATCAACGTGTTGAACGCGGGCTGTACG
TCTGTGAGTCGTGCGATGCAGCGTTCAACGCTGATGTGAATGGGGCGGAGAACATCTGTTTCGACTTGAACCAAAGTAACTCCGAGTCTGCACCTGATTT
GGGTGGAGATAGGAGTACCGGCTGGTTAGCACAGCCATCAGTCTATCTTCATGACTTGTCCCACGGATTCTCACCGCGGGAACAAGTGGTAGACTGCAAA
CCCTAATATCCCAATCCAGCGGTTCGGTGCCGTGGGATTCCTCCGCCTTCAGGCGGATGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1314 bp | 437 aa | 193 | 1506 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHQANIRNHSQVAESLDRHGWSASKLWNVANYHSREVWEETGDIPDHEELKAELKTHPTYKGLHSQSSQRVLEELAEGFNSWYGSEDDRDNPPG
YRKENYYDDEGRRVHEEHPRSTVTWKQNGFKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGITVENIQQVRSVYDQHKERWELHLVCKNEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIATCDDAGGNRATNLQKKWSERRTHFFHSLAKHIVERCVENGVGRINIGDLEGVRE
DEDGSSKNWGKHGNLDLHGWAFDRFTSILEYKAKGEGIKIVEVDERDTSKACCVCGRTDENQRVERGLYVCESCDAAFNADVNGAENICFDLNQSNSESA
PDLGGDRSTGWLAQPSVYLHDLSHGFSPREQVVDCKP
YRKENYYDDEGRRVHEEHPRSTVTWKQNGFKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGITVENIQQVRSVYDQHKERWELHLVCKNEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIATCDDAGGNRATNLQKKWSERRTHFFHSLAKHIVERCVENGVGRINIGDLEGVRE
DEDGSSKNWGKHGNLDLHGWAFDRFTSILEYKAKGEGIKIVEVDERDTSKACCVCGRTDENQRVERGLYVCESCDAAFNADVNGAENICFDLNQSNSESA
PDLGGDRSTGWLAQPSVYLHDLSHGFSPREQVVDCKP
Blast result :
Comments
ISHwa26 is 92% (TnpB) aa similar to ISNma19. In the genome, there is a MITE inserted in this sequence, the MITE was in silico deleted.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169