ISHwa24
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1500 bp
Ends
Left end : GGAGAGCCGAGGAGAAAGCCTCGCGCTTCAGCGCTGGGATGAATCCGACACTTCCTTTCACACTCCACCAGCTAATGTCACAGCTGGACATTCCACGCTA II struct. : Yes
Right end : TTTGCACCTGAAGAACGGGTTAGGTCGTAAACCACAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTGCTTCAGG | TTAC | CCGAAGTGCT | tcaa |
DNA sequence
GGAGAGCCGAGGAGAAAGCCTCGCGCTTCAGCGCTGGGATGAATCCGACACTTCCTTTCACACTCCACCAGCTAATGTCACAGCTGGACATTCCACGCTA
CTCCAACCCAACCCTACCCTTCAAATTAGTTTATCTACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTACATCGCTTCCATACGGAACCAG
TCTCAGGTGCAAGACGACCTTGATTCGCTCGGGTTCGCTGCCTCGAAGCTCTGGAACGTCGGACGGTGGACGTGCAGTCGGATTTGGGATGAAATCGATC
ATATCCCGAACCACAACGAACTCACCACGTACCTCAAAACCCACGAACGCTACGATGACCTGCATTCGCAGTCAAGTCAGCGAGTCCTTCAAGAACTCGC
TGAAGCGTTCAACGGTTGGTACGGTAAACGACGCAACGGGGACACGAACGCGAATCCGCCCGGCTACCGCAAACACGGCGATGACCACCCACGTTCCACG
GTCACATTCAAAGCTGCTGGCTTCAAGCTCGATACCCAGTACTACCGCGTTCGACTCTCAAAGGGGTCGAACCTCAAGGACTACTGGTCGGACTTCATTC
TTTGTGAGTACCAAACCCGCCCCGACGTCGATCTCTCCACTGTCGAGAACGTCCAACAGGTGCGAATAGTTTGGACGGGTACGGAATGGGAACTACACTT
CGTCTGTAAGGTCCAAATCGACGTGGCTGAAGCCCCCAGTGAGAATACGGTAGGCGTTGATCTCGGGATCAACAACTTCGCCGCGCTCGCGTATGAAGAC
GGCCACGGCGAGCTCTATCCGCTGAACTGTCTGAAGCAGGACGACTACTACTTTAGCAAACGGATTGCCCGGTGTGATGACTCGAACTCCGAGCAGGCCA
CCCGGCTGAATCATAAGAAGTCGGCTCGTCGCACTCACTATTTCCATACGCTTTCGAAACACATTGTTGAACGGTGTGTTGAGGAAGGCGTTGGAACGAT
CGTAGTGGGAGATCTCTCGGGGATCCGCGAAGATGATGACACCAACAAGTCGAAAAACTGGGGGAAACACGGTAATCTCGACTTGCACTCGTGGGCGTTT
GACCGGTTCACCGACCTTCTCGAATACAAGGCGGAGATGGAAGGAATCACCGTCGAGGAAGCCTCTGAGGAGGACACGTCGAAGTCGTGTTCGTGCTGTG
GTCGCAAGCGTGATGCGAACCGTGTTGAACGCGGGTTGTACGTCTGTGATGACTGTGGGACGGTAGCGAACGCTGATGTGAACGGGGCTGAGAATATCCG
ACAGAAAGTATCTCTGAGTTCACTGAATCTGTCGGTGAATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAAGGAGACTGGTGCG
TTTGCACCTGAAGAACGGGTTAGGTCGTAAACCACAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA
CTCCAACCCAACCCTACCCTTCAAATTAGTTTATCTACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTACATCGCTTCCATACGGAACCAG
TCTCAGGTGCAAGACGACCTTGATTCGCTCGGGTTCGCTGCCTCGAAGCTCTGGAACGTCGGACGGTGGACGTGCAGTCGGATTTGGGATGAAATCGATC
ATATCCCGAACCACAACGAACTCACCACGTACCTCAAAACCCACGAACGCTACGATGACCTGCATTCGCAGTCAAGTCAGCGAGTCCTTCAAGAACTCGC
TGAAGCGTTCAACGGTTGGTACGGTAAACGACGCAACGGGGACACGAACGCGAATCCGCCCGGCTACCGCAAACACGGCGATGACCACCCACGTTCCACG
GTCACATTCAAAGCTGCTGGCTTCAAGCTCGATACCCAGTACTACCGCGTTCGACTCTCAAAGGGGTCGAACCTCAAGGACTACTGGTCGGACTTCATTC
TTTGTGAGTACCAAACCCGCCCCGACGTCGATCTCTCCACTGTCGAGAACGTCCAACAGGTGCGAATAGTTTGGACGGGTACGGAATGGGAACTACACTT
CGTCTGTAAGGTCCAAATCGACGTGGCTGAAGCCCCCAGTGAGAATACGGTAGGCGTTGATCTCGGGATCAACAACTTCGCCGCGCTCGCGTATGAAGAC
GGCCACGGCGAGCTCTATCCGCTGAACTGTCTGAAGCAGGACGACTACTACTTTAGCAAACGGATTGCCCGGTGTGATGACTCGAACTCCGAGCAGGCCA
CCCGGCTGAATCATAAGAAGTCGGCTCGTCGCACTCACTATTTCCATACGCTTTCGAAACACATTGTTGAACGGTGTGTTGAGGAAGGCGTTGGAACGAT
CGTAGTGGGAGATCTCTCGGGGATCCGCGAAGATGATGACACCAACAAGTCGAAAAACTGGGGGAAACACGGTAATCTCGACTTGCACTCGTGGGCGTTT
GACCGGTTCACCGACCTTCTCGAATACAAGGCGGAGATGGAAGGAATCACCGTCGAGGAAGCCTCTGAGGAGGACACGTCGAAGTCGTGTTCGTGCTGTG
GTCGCAAGCGTGATGCGAACCGTGTTGAACGCGGGTTGTACGTCTGTGATGACTGTGGGACGGTAGCGAACGCTGATGTGAACGGGGCTGAGAATATCCG
ACAGAAAGTATCTCTGAGTTCACTGAATCTGTCGGTGAATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAAGGAGACTGGTGCG
TTTGCACCTGAAGAACGGGTTAGGTCGTAAACCACAATATCCCAACTCAGCGGTGCGGTGCCGTGGGAATCCTCGCGCTTCAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 150 | 1430 | + | No |
AG : TnpB
ORF sequence :
MAKQVVTRTYIASIRNQSQVQDDLDSLGFAASKLWNVGRWTCSRIWDEIDHIPNHNELTTYLKTHERYDDLHSQSSQRVLQELAEAFNGWYGKRRNGDTN
ANPPGYRKHGDDHPRSTVTFKAAGFKLDTQYYRVRLSKGSNLKDYWSDFILCEYQTRPDVDLSTVENVQQVRIVWTGTEWELHFVCKVQIDVAEAPSENT
VGVDLGINNFAALAYEDGHGELYPLNCLKQDDYYFSKRIARCDDSNSEQATRLNHKKSARRTHYFHTLSKHIVERCVEEGVGTIVVGDLSGIREDDDTNK
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGITVEEASEEDTSKSCSCCGRKRDANRVERGLYVCDDCGTVANADVNGAENIRQKVSLSSLNLSVNRSN
GWLAQPSTFLFDKETGAFAPEERVRS
ANPPGYRKHGDDHPRSTVTFKAAGFKLDTQYYRVRLSKGSNLKDYWSDFILCEYQTRPDVDLSTVENVQQVRIVWTGTEWELHFVCKVQIDVAEAPSENT
VGVDLGINNFAALAYEDGHGELYPLNCLKQDDYYFSKRIARCDDSNSEQATRLNHKKSARRTHYFHTLSKHIVERCVEEGVGTIVVGDLSGIREDDDTNK
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGITVEEASEEDTSKSCSCCGRKRDANRVERGLYVCDDCGTVANADVNGAENIRQKVSLSSLNLSVNRSN
GWLAQPSTFLFDKETGAFAPEERVRS
Blast result :
Comments
ISHwa24 is 93% (TnpB) aa similar to ISHla18.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169