ISHwa22

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 1541 bp

Ends


Left end : AAATAGCAAGGAGAATACCCGCGCCTTTAGGCGCGGGATGAATCCAACAACTCCTCCACAGTCCACCGTCGATAGCCCGACTGGATATTCCACGCCCAAA II struct. : Yes
Right end : CCAACCGCAGGGTCAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGTGTTTACGCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CATTTGTGCGTTATACTGCTCAGTtcaa

DNA sequence

AAATAGCAAGGAGAATACCCGCGCCTTTAGGCGCGGGATGAATCCAACAACTCCTCCACAGTCCACCGTCGATAGCCCGACTGGATATTCCACGCCCAAA
TCCAAACTTTTACAACAGAACGCCGCATAACAAGTTATGGAAGCGTTCCACGATGTACATCCACCGCACCTACCGGGCGAAAATCCTCAACCACCAGCAG
GTAGAGGAACCGCTCGACCGGCACGGGTGGAGTGCGTCGAAACTCTGGAACGTTGCGAACTACTACTCCCGAGAAGTGTGGGATGAGACGGGCGAGATTC
CTGACGATTCGGACTTGAAGAGCGAGTTGAAGACTCACAACAAGTACAAAGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAAGAACTCGCTGAAGC
CTTCAACTCGTGGTACGGCAAACGTAGGAACGATTCTCGTGCGAATCCGCCCGGCTACCGCAAGAAAAACTACTACGACAACCAAGGCCGCCGTGTCCAC
GAAGAACACCCGCGAAGCACGGTGACGTGGAAGCAGAAAGGTATCCGACACGATGCCAACAACGGGCGAGTGCGCCTCTCTAAAGGAGCGAATCACAAAC
AACACCCCCGAGCATGGGAATACATCCTTGTCGAATACGAAACGCGCCCCGGAGTTACCGTCGAGAACCTGCAACAAGTCCGTGCCGTCTACGACAAGGC
AAAACGGCGCTGGGAACTGCACTTAGTGTGTAAGCACGAAGTGGAGACGCCCGACGCTCCCGGCAACGAGACGGCGGGTATCGACCTTGGCATTTGTAAC
TTCGCCGCTGTTGCGTACAGTACTGAGGAAGCTGAGTTGTACCCCGGCAACCGCCTCAAACAGGACGGCTACTACTTCCCGAAGGAAATCGCCACGTGTG
ACGATTCAGGCGGCCAAGAAGCCACTCGTCTTCACGCGAAGTGGTCGGAGCGCCGCACCCACTTCTTCCACAGCCTCGCTAAACACATCGTCCAGCGATG
TATCGAGAACGGTGTTGGACACATCAACGTCGGAAAACTCGCTGGTGTCCGAGAGGACGACAACGGTAACGGTAACTCGAAGAACTGGGGGAAGCACGGC
AACCTTGACCTACACGGGTGGGCATTCGACCGGTTCTCGAACATCCTTGAATACAAAGCCAAAGTCGAAGGCATCGAAGTCGGAGAAGTGTCGGAGCGCG
ACACGAGCAAAACGTGTTGTGTCTGCGGGAGGAAAGACGACAGTCAGCGTGTCGAACGTGGCTTGTACGTGTGCGAGGAACACGACGATGCGTTCAACGC
TGATGTGAATGGGGCGGAGAACATCCGCCTCAACATTAACGACGAAAGTAACTCCGAGTCTTCGGCCAGTTTGGACGAGGATAGGAGTACCGGCTGGTTG
GCACAGCCCGGAGTCTACCTTCACGACTTGTCCAGCGGATTCCAACCGCAGGGTCAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGT
GCCGTGGGATTCCTCCGTGTTTACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1326 bp441 aa1531478+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYIHRTYRAKILNHQQVEEPLDRHGWSASKLWNVANYYSREVWDETGEIPDDSDLKSELKTHNKYKGLHSQSSQRVLEELAEAFNSWYGKRRNDSRANPP
GYRKKNYYDNQGRRVHEEHPRSTVTWKQKGIRHDANNGRVRLSKGANHKQHPRAWEYILVEYETRPGVTVENLQQVRAVYDKAKRRWELHLVCKHEVETP
DAPGNETAGIDLGICNFAAVAYSTEEAELYPGNRLKQDGYYFPKEIATCDDSGGQEATRLHAKWSERRTHFFHSLAKHIVQRCIENGVGHINVGKLAGVR
EDDNGNGNSKNWGKHGNLDLHGWAFDRFSNILEYKAKVEGIEVGEVSERDTSKTCCVCGRKDDSQRVERGLYVCEEHDDAFNADVNGAENIRLNINDESN
SESSASLDEDRSTGWLAQPGVYLHDLSSGFQPQGQVVDCKP

 

Blast result :
Comments
ISHwa22 is 92% (TnpB) aa similar to ISHarch11.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169