ISHwa22
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1541 bp
Ends
Left end : AAATAGCAAGGAGAATACCCGCGCCTTTAGGCGCGGGATGAATCCAACAACTCCTCCACAGTCCACCGTCGATAGCCCGACTGGATATTCCACGCCCAAA II struct. : Yes
Right end : CCAACCGCAGGGTCAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGTGTTTACGCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CATTTGTGCG | TTAT | ACTGCTCAGT | tcaa |
DNA sequence
AAATAGCAAGGAGAATACCCGCGCCTTTAGGCGCGGGATGAATCCAACAACTCCTCCACAGTCCACCGTCGATAGCCCGACTGGATATTCCACGCCCAAA
TCCAAACTTTTACAACAGAACGCCGCATAACAAGTTATGGAAGCGTTCCACGATGTACATCCACCGCACCTACCGGGCGAAAATCCTCAACCACCAGCAG
GTAGAGGAACCGCTCGACCGGCACGGGTGGAGTGCGTCGAAACTCTGGAACGTTGCGAACTACTACTCCCGAGAAGTGTGGGATGAGACGGGCGAGATTC
CTGACGATTCGGACTTGAAGAGCGAGTTGAAGACTCACAACAAGTACAAAGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAAGAACTCGCTGAAGC
CTTCAACTCGTGGTACGGCAAACGTAGGAACGATTCTCGTGCGAATCCGCCCGGCTACCGCAAGAAAAACTACTACGACAACCAAGGCCGCCGTGTCCAC
GAAGAACACCCGCGAAGCACGGTGACGTGGAAGCAGAAAGGTATCCGACACGATGCCAACAACGGGCGAGTGCGCCTCTCTAAAGGAGCGAATCACAAAC
AACACCCCCGAGCATGGGAATACATCCTTGTCGAATACGAAACGCGCCCCGGAGTTACCGTCGAGAACCTGCAACAAGTCCGTGCCGTCTACGACAAGGC
AAAACGGCGCTGGGAACTGCACTTAGTGTGTAAGCACGAAGTGGAGACGCCCGACGCTCCCGGCAACGAGACGGCGGGTATCGACCTTGGCATTTGTAAC
TTCGCCGCTGTTGCGTACAGTACTGAGGAAGCTGAGTTGTACCCCGGCAACCGCCTCAAACAGGACGGCTACTACTTCCCGAAGGAAATCGCCACGTGTG
ACGATTCAGGCGGCCAAGAAGCCACTCGTCTTCACGCGAAGTGGTCGGAGCGCCGCACCCACTTCTTCCACAGCCTCGCTAAACACATCGTCCAGCGATG
TATCGAGAACGGTGTTGGACACATCAACGTCGGAAAACTCGCTGGTGTCCGAGAGGACGACAACGGTAACGGTAACTCGAAGAACTGGGGGAAGCACGGC
AACCTTGACCTACACGGGTGGGCATTCGACCGGTTCTCGAACATCCTTGAATACAAAGCCAAAGTCGAAGGCATCGAAGTCGGAGAAGTGTCGGAGCGCG
ACACGAGCAAAACGTGTTGTGTCTGCGGGAGGAAAGACGACAGTCAGCGTGTCGAACGTGGCTTGTACGTGTGCGAGGAACACGACGATGCGTTCAACGC
TGATGTGAATGGGGCGGAGAACATCCGCCTCAACATTAACGACGAAAGTAACTCCGAGTCTTCGGCCAGTTTGGACGAGGATAGGAGTACCGGCTGGTTG
GCACAGCCCGGAGTCTACCTTCACGACTTGTCCAGCGGATTCCAACCGCAGGGTCAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGT
GCCGTGGGATTCCTCCGTGTTTACGCGGAGGAGGATGTCAA
TCCAAACTTTTACAACAGAACGCCGCATAACAAGTTATGGAAGCGTTCCACGATGTACATCCACCGCACCTACCGGGCGAAAATCCTCAACCACCAGCAG
GTAGAGGAACCGCTCGACCGGCACGGGTGGAGTGCGTCGAAACTCTGGAACGTTGCGAACTACTACTCCCGAGAAGTGTGGGATGAGACGGGCGAGATTC
CTGACGATTCGGACTTGAAGAGCGAGTTGAAGACTCACAACAAGTACAAAGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAAGAACTCGCTGAAGC
CTTCAACTCGTGGTACGGCAAACGTAGGAACGATTCTCGTGCGAATCCGCCCGGCTACCGCAAGAAAAACTACTACGACAACCAAGGCCGCCGTGTCCAC
GAAGAACACCCGCGAAGCACGGTGACGTGGAAGCAGAAAGGTATCCGACACGATGCCAACAACGGGCGAGTGCGCCTCTCTAAAGGAGCGAATCACAAAC
AACACCCCCGAGCATGGGAATACATCCTTGTCGAATACGAAACGCGCCCCGGAGTTACCGTCGAGAACCTGCAACAAGTCCGTGCCGTCTACGACAAGGC
AAAACGGCGCTGGGAACTGCACTTAGTGTGTAAGCACGAAGTGGAGACGCCCGACGCTCCCGGCAACGAGACGGCGGGTATCGACCTTGGCATTTGTAAC
TTCGCCGCTGTTGCGTACAGTACTGAGGAAGCTGAGTTGTACCCCGGCAACCGCCTCAAACAGGACGGCTACTACTTCCCGAAGGAAATCGCCACGTGTG
ACGATTCAGGCGGCCAAGAAGCCACTCGTCTTCACGCGAAGTGGTCGGAGCGCCGCACCCACTTCTTCCACAGCCTCGCTAAACACATCGTCCAGCGATG
TATCGAGAACGGTGTTGGACACATCAACGTCGGAAAACTCGCTGGTGTCCGAGAGGACGACAACGGTAACGGTAACTCGAAGAACTGGGGGAAGCACGGC
AACCTTGACCTACACGGGTGGGCATTCGACCGGTTCTCGAACATCCTTGAATACAAAGCCAAAGTCGAAGGCATCGAAGTCGGAGAAGTGTCGGAGCGCG
ACACGAGCAAAACGTGTTGTGTCTGCGGGAGGAAAGACGACAGTCAGCGTGTCGAACGTGGCTTGTACGTGTGCGAGGAACACGACGATGCGTTCAACGC
TGATGTGAATGGGGCGGAGAACATCCGCCTCAACATTAACGACGAAAGTAACTCCGAGTCTTCGGCCAGTTTGGACGAGGATAGGAGTACCGGCTGGTTG
GCACAGCCCGGAGTCTACCTTCACGACTTGTCCAGCGGATTCCAACCGCAGGGTCAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGT
GCCGTGGGATTCCTCCGTGTTTACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1326 bp | 441 aa | 153 | 1478 | + | No |
AG : TnpB
ORF sequence :
MYIHRTYRAKILNHQQVEEPLDRHGWSASKLWNVANYYSREVWDETGEIPDDSDLKSELKTHNKYKGLHSQSSQRVLEELAEAFNSWYGKRRNDSRANPP
GYRKKNYYDNQGRRVHEEHPRSTVTWKQKGIRHDANNGRVRLSKGANHKQHPRAWEYILVEYETRPGVTVENLQQVRAVYDKAKRRWELHLVCKHEVETP
DAPGNETAGIDLGICNFAAVAYSTEEAELYPGNRLKQDGYYFPKEIATCDDSGGQEATRLHAKWSERRTHFFHSLAKHIVQRCIENGVGHINVGKLAGVR
EDDNGNGNSKNWGKHGNLDLHGWAFDRFSNILEYKAKVEGIEVGEVSERDTSKTCCVCGRKDDSQRVERGLYVCEEHDDAFNADVNGAENIRLNINDESN
SESSASLDEDRSTGWLAQPGVYLHDLSSGFQPQGQVVDCKP
GYRKKNYYDNQGRRVHEEHPRSTVTWKQKGIRHDANNGRVRLSKGANHKQHPRAWEYILVEYETRPGVTVENLQQVRAVYDKAKRRWELHLVCKHEVETP
DAPGNETAGIDLGICNFAAVAYSTEEAELYPGNRLKQDGYYFPKEIATCDDSGGQEATRLHAKWSERRTHFFHSLAKHIVQRCIENGVGHINVGKLAGVR
EDDNGNGNSKNWGKHGNLDLHGWAFDRFSNILEYKAKVEGIEVGEVSERDTSKTCCVCGRKDDSQRVERGLYVCEEHDDAFNADVNGAENIRLNINDESN
SESSASLDEDRSTGWLAQPGVYLHDLSSGFQPQGQVVDCKP
Blast result :
Comments
ISHwa22 is 92% (TnpB) aa similar to ISHarch11.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M.,Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169