ISHma16
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY596294 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 pNG500 |
DNA section
IS Length : 1526 bp
Ends
Left end : GCGGCCTGCGACCCAGCCACTGACCGCCGCCGGCAGGCTGTGGATACGCGCCGTCACTCCGTGACACATTCTACTGACTCCGACAGGGCTGGATATTCCA II struct. : Yes
Right end : CCTCTCCTGCGGATTCCAACCGCAACGAGAGGTGGTAGACTCCAAACCCTAATATCCCAACCTCGGGATTCCTCCGCGTTCACGCGGAGGAAGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGTAGCTGTGGC | TGAT | ACCGCTGAACCT | tcaa |
DNA sequence
GCGGCCTGCGACCCAGCCACTGACCGCCGCCGGCAGGCTGTGGATACGCGCCGTCACTCCGTGACACATTCTACTGACTCCGACAGGGCTGGATATTCCA
CCGCTATCAATCCCAGTCTTTATAAGAAAAGTGAGTATAAGCTATTATACAGACGTTCAGAATGCTGGAAGTCCACCGAACCCATCGAGCGAAAATCCTC
AATTACAGTCAGGTAGAGGACTCGCTCAACCGTCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGCCAAGTCTGGGAGGAGA
CTAGGGAGATTCCCGGCCATGAGGAGTTGAAAAACGAGTTGAAAGGTCACGACAAGTACAAGGGACTGCACAGTCAGTCCAGTCAGCGGGTTCTGGAGGA
ACTCGCTGAAGCCTTCAACTCGTGGTACTCCAGTGATGACGAACGGGACAATCCGCCCGGCTATCGCAAACAAAACTACTACGACCAACAGGGTCGTCGC
GTCCACGAAGAACACCCACTCAGTACGGTGACGTGGAAACAGAACGGCATCCGCCACGACACTAAGAACAACCGTGTCCGCCTCTCTAAGGGAGCGAACC
ACAAAGAACATCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAGACACGCCCCGGCGTCGAGGTTGAGAACCTGCAACAGGTTCGTGCTGTTTACGA
CCAAACAAAGGAGCGATGGGAGTTACACCTCGTCTGCAAGGAAGAAATCGAGACGCCCGACGCTCCCGGAACCGAGACTGCGGGCATCGATCTCGGTATC
AGCAACTTCGCCGCTGTCGCCTACAGCACCGAAGACGCCGACCTCTATCCCGGCAACCGCCTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCA
ACTGTGACGACAGCAGTGGCGACAGGGCCACGCGACTTCATCACAAATGGTCGGAACGCCGCACCCACTTCTTCCACAGTCTCGCCAAACACATCGTGGA
GAAATGTATCGAGCGTAGTGTGGGTCGCATCAATGTCGGGGACTTGGAAGGCATCCGCGAGGACGAGAACGCCAAGTCGAAGAACTGGGGTCGGCACGGC
AACCTCGACCTACACGGGTGGGCGTTCGACCGCTTCACGTCGATCCTCGAATACAAGGCGAAGGTTGAGGGCATCGAGGTCATGGAAGTGTCCGAACGCG
ACACGAGTAAAACGTGCTGCGTTTGTGGAAGAGAGGACGACAGTCAGCGTGTCGAACGCGGGTTGTACGTCTGTGAGTCGTGTGATGCGGCGTTCAACGC
GGATGTGAACGGGGCGGAAAACATCCGTCTGGATATCGACGAGGAAAGTAACTCCGAGTCTACCGGGCAGTTGTCCGGGGATAGGAGTACCGGCTGGTTG
GCACAGCCCGGAGTCTACCTGTACGACCTCTCCTGCGGATTCCAACCGCAACGAGAGGTGGTAGACTCCAAACCCTAATATCCCAACCTCGGGATTCCTC
CGCGTTCACGCGGAGGAAGATGTCAA
CCGCTATCAATCCCAGTCTTTATAAGAAAAGTGAGTATAAGCTATTATACAGACGTTCAGAATGCTGGAAGTCCACCGAACCCATCGAGCGAAAATCCTC
AATTACAGTCAGGTAGAGGACTCGCTCAACCGTCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGCCAAGTCTGGGAGGAGA
CTAGGGAGATTCCCGGCCATGAGGAGTTGAAAAACGAGTTGAAAGGTCACGACAAGTACAAGGGACTGCACAGTCAGTCCAGTCAGCGGGTTCTGGAGGA
ACTCGCTGAAGCCTTCAACTCGTGGTACTCCAGTGATGACGAACGGGACAATCCGCCCGGCTATCGCAAACAAAACTACTACGACCAACAGGGTCGTCGC
GTCCACGAAGAACACCCACTCAGTACGGTGACGTGGAAACAGAACGGCATCCGCCACGACACTAAGAACAACCGTGTCCGCCTCTCTAAGGGAGCGAACC
ACAAAGAACATCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAGACACGCCCCGGCGTCGAGGTTGAGAACCTGCAACAGGTTCGTGCTGTTTACGA
CCAAACAAAGGAGCGATGGGAGTTACACCTCGTCTGCAAGGAAGAAATCGAGACGCCCGACGCTCCCGGAACCGAGACTGCGGGCATCGATCTCGGTATC
AGCAACTTCGCCGCTGTCGCCTACAGCACCGAAGACGCCGACCTCTATCCCGGCAACCGCCTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCA
ACTGTGACGACAGCAGTGGCGACAGGGCCACGCGACTTCATCACAAATGGTCGGAACGCCGCACCCACTTCTTCCACAGTCTCGCCAAACACATCGTGGA
GAAATGTATCGAGCGTAGTGTGGGTCGCATCAATGTCGGGGACTTGGAAGGCATCCGCGAGGACGAGAACGCCAAGTCGAAGAACTGGGGTCGGCACGGC
AACCTCGACCTACACGGGTGGGCGTTCGACCGCTTCACGTCGATCCTCGAATACAAGGCGAAGGTTGAGGGCATCGAGGTCATGGAAGTGTCCGAACGCG
ACACGAGTAAAACGTGCTGCGTTTGTGGAAGAGAGGACGACAGTCAGCGTGTCGAACGCGGGTTGTACGTCTGTGAGTCGTGTGATGCGGCGTTCAACGC
GGATGTGAACGGGGCGGAAAACATCCGTCTGGATATCGACGAGGAAAGTAACTCCGAGTCTACCGGGCAGTTGTCCGGGGATAGGAGTACCGGCTGGTTG
GCACAGCCCGGAGTCTACCTGTACGACCTCTCCTGCGGATTCCAACCGCAACGAGAGGTGGTAGACTCCAAACCCTAATATCCCAACCTCGGGATTCCTC
CGCGTTCACGCGGAGGAAGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 438 aa | 162 | 1478 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHRAKILNYSQVEDSLNRHGWSASKLWNVANYHSRQVWEETREIPGHEELKNELKGHDKYKGLHSQSSQRVLEELAEAFNSWYSSDDERDNPPG
YRKQNYYDQQGRRVHEEHPLSTVTWKQNGIRHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVEVENLQQVRAVYDQTKERWELHLVCKEEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCDDSSGDRATRLHHKWSERRTHFFHSLAKHIVEKCIERSVGRINVGDLEGIRE
DENAKSKNWGRHGNLDLHGWAFDRFTSILEYKAKVEGIEVMEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDAAFNADVNGAENIRLDIDEESNSES
TGQLSGDRSTGWLAQPGVYLYDLSCGFQPQREVVDSKP
YRKQNYYDQQGRRVHEEHPLSTVTWKQNGIRHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVEVENLQQVRAVYDQTKERWELHLVCKEEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCDDSSGDRATRLHHKWSERRTHFFHSLAKHIVEKCIERSVGRINVGDLEGIRE
DENAKSKNWGRHGNLDLHGWAFDRFTSILEYKAKVEGIEVMEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDAAFNADVNGAENIRLDIDEESNSES
TGQLSGDRSTGWLAQPGVYLYDLSCGFQPQREVVDSKP
Blast result :
Comments
ISHma16 is 93% aa similar to ISNma19.
References
1] F. Pfeiffer (2015) Direct submission
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234