ISHma16

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY596294 ND Haloarcula marismortui
Haloarcula marismortui ATCC 43049 pNG500
DNA section
IS Length : 1526 bp

Ends


Left end : GCGGCCTGCGACCCAGCCACTGACCGCCGCCGGCAGGCTGTGGATACGCGCCGTCACTCCGTGACACATTCTACTGACTCCGACAGGGCTGGATATTCCA II struct. : Yes
Right end : CCTCTCCTGCGGATTCCAACCGCAACGAGAGGTGGTAGACTCCAAACCCTAATATCCCAACCTCGGGATTCCTCCGCGTTCACGCGGAGGAAGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGTAGCTGTGGCTGATACCGCTGAACCTtcaa

DNA sequence

GCGGCCTGCGACCCAGCCACTGACCGCCGCCGGCAGGCTGTGGATACGCGCCGTCACTCCGTGACACATTCTACTGACTCCGACAGGGCTGGATATTCCA
CCGCTATCAATCCCAGTCTTTATAAGAAAAGTGAGTATAAGCTATTATACAGACGTTCAGAATGCTGGAAGTCCACCGAACCCATCGAGCGAAAATCCTC
AATTACAGTCAGGTAGAGGACTCGCTCAACCGTCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGCCAAGTCTGGGAGGAGA
CTAGGGAGATTCCCGGCCATGAGGAGTTGAAAAACGAGTTGAAAGGTCACGACAAGTACAAGGGACTGCACAGTCAGTCCAGTCAGCGGGTTCTGGAGGA
ACTCGCTGAAGCCTTCAACTCGTGGTACTCCAGTGATGACGAACGGGACAATCCGCCCGGCTATCGCAAACAAAACTACTACGACCAACAGGGTCGTCGC
GTCCACGAAGAACACCCACTCAGTACGGTGACGTGGAAACAGAACGGCATCCGCCACGACACTAAGAACAACCGTGTCCGCCTCTCTAAGGGAGCGAACC
ACAAAGAACATCCGAAAGCGTGGGAGTACATCCTTGTCGAATACGAGACACGCCCCGGCGTCGAGGTTGAGAACCTGCAACAGGTTCGTGCTGTTTACGA
CCAAACAAAGGAGCGATGGGAGTTACACCTCGTCTGCAAGGAAGAAATCGAGACGCCCGACGCTCCCGGAACCGAGACTGCGGGCATCGATCTCGGTATC
AGCAACTTCGCCGCTGTCGCCTACAGCACCGAAGACGCCGACCTCTATCCCGGCAACCGCCTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCA
ACTGTGACGACAGCAGTGGCGACAGGGCCACGCGACTTCATCACAAATGGTCGGAACGCCGCACCCACTTCTTCCACAGTCTCGCCAAACACATCGTGGA
GAAATGTATCGAGCGTAGTGTGGGTCGCATCAATGTCGGGGACTTGGAAGGCATCCGCGAGGACGAGAACGCCAAGTCGAAGAACTGGGGTCGGCACGGC
AACCTCGACCTACACGGGTGGGCGTTCGACCGCTTCACGTCGATCCTCGAATACAAGGCGAAGGTTGAGGGCATCGAGGTCATGGAAGTGTCCGAACGCG
ACACGAGTAAAACGTGCTGCGTTTGTGGAAGAGAGGACGACAGTCAGCGTGTCGAACGCGGGTTGTACGTCTGTGAGTCGTGTGATGCGGCGTTCAACGC
GGATGTGAACGGGGCGGAAAACATCCGTCTGGATATCGACGAGGAAAGTAACTCCGAGTCTACCGGGCAGTTGTCCGGGGATAGGAGTACCGGCTGGTTG
GCACAGCCCGGAGTCTACCTGTACGACCTCTCCTGCGGATTCCAACCGCAACGAGAGGTGGTAGACTCCAAACCCTAATATCCCAACCTCGGGATTCCTC
CGCGTTCACGCGGAGGAAGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1621478+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEVHRTHRAKILNYSQVEDSLNRHGWSASKLWNVANYHSRQVWEETREIPGHEELKNELKGHDKYKGLHSQSSQRVLEELAEAFNSWYSSDDERDNPPG
YRKQNYYDQQGRRVHEEHPLSTVTWKQNGIRHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVEVENLQQVRAVYDQTKERWELHLVCKEEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCDDSSGDRATRLHHKWSERRTHFFHSLAKHIVEKCIERSVGRINVGDLEGIRE
DENAKSKNWGRHGNLDLHGWAFDRFTSILEYKAKVEGIEVMEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDAAFNADVNGAENIRLDIDEESNSES
TGQLSGDRSTGWLAQPGVYLYDLSCGFQPQREVVDSKP

 

Blast result :
Comments
ISHma16 is 93% aa similar to ISNma19.
References
1] F. Pfeiffer (2015) Direct submission
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234