ISHbo10

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001690 ND Halogeometricum borinquense
Halogeometricum borinquense DSM 11551
DNA section
IS Length : 1543 bp

Ends


Left end : ACAGAATCGAGGAGAATACCTGACCCTAAAGGGTCAGGATGAATCTGACAACGACTCCACAACCCACCGTTGATGGCAGGGCCGGATATTCCACCATTCT II struct. : Yes
Right end : CCAACCGCAGGAACAAGTGGTAGACTGCAAACCTTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTATTCGGCCAGTTATCCACGGTCATTTtcaa

DNA sequence

ACAGAATCGAGGAGAATACCTGACCCTAAAGGGTCAGGATGAATCTGACAACGACTCCACAACCCACCGTTGATGGCAGGGCCGGATATTCCACCATTCT
CAATCCGAATATTTACTAGAGACGCGAGTATAAGTGCTTATACAGACGTTCAGAATGCTGGAAGTCCACCGCACCCACCGAGCGAAAATCCTCAACCACT
CCCAAGTGGCTGAGATGCTCGACCGGCACGGGTGGTCGGCCAGTAAGCTCTGGAACGTCGCCAACTACCACTCCCGCAACGTGTGGGAGGATACGGGTGA
GATTCCCGACCACGGCGACCTCAAAGACGAGTTGAAGACCCATCCAAAATACAAGGGACTGCATAGTCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCT
GAAGCCTTCAACTCGTGGTACGGTAAGAGGAAGTCTGACAGTCGAGCGAATCCGCCCGGCTACCGCAAGAAAAACTACTACGATCAACATGGTCGTCGCG
TCCACGAAGAACACCCTCGCTCCACTGTAACGTGGAAGCAAAACGGCATCAAACACGACGCGAAAAACAACCGCGTTCGCCTCTCGAAGGGCGCGAATCA
CAAGGAACACCCCCGAGCATGGGAATACATCCTTGTCGAATACGAGACACGACCCGGCGTCACGGTCGAAAACCTGCAACAAGTCCGTGCCGTCTACGAC
CAATCAAAGGAGCGGTGGGAACTGCACCTCGTCTGTAAAGACGAAATCGAGGCGCCCACCGCTCCCGGTACCGAGACGGCAGGTATCGACCTCGGTATCT
GCAACTTCGCCGCTGTCGCATACAGCACCGAGGAAGCCGACTTGTACCCCGGCAACCGTCTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCAA
GTGCGACGACTCGGGTGGCGATAGGGCCACGCGACTTCATCACAAGTGGTCGGAGCGCCGCACGCACTTCTTTCACTCCTTAGCGAAACACATTGTGGAG
AAGTGTATCGAGCGGGGCGTGGGTCGCATCAACGTCGGGAAGCTCGCTGGTGTCCGCGAGGATGAGAACGGCGAGTCAAAGAACTGGGGAAAGCACGGGA
ACCTCGACTTACACGGGTGGGCGTTCGACCGCTTCACCAAGATTCTCACGTACAAAGCCAAGGTTGAGGGCATTGATGTCGTAGAGGTTTCAGAGCGCGA
CACGAGTAAGACGTGTTGTGTCTGCGGTAGGAAAGACGACAGTCAGCGTGTTGAACGCGGCCTGTACGTGTGTGATGAGTGTGACGCGGCGTTCAACGCT
GACGTGAACGGGGCGGAGAACATCCGTCTCAACATCAACGAAGCAGAAAGTAACTCCGAGTCTCCGCCCGGTTTGGACGGGAATAGGAGTACCGGCTGGT
TGGCACAGCCCGGAGTCTACCTTCATGACTTGTCCAGCGGATTCCAACCGCAGGAACAAGTGGTAGACTGCAAACCTTAATATCCCAATCCAGCGGTGCG
GTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1326 bp441 aa1551480+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEVHRTHRAKILNHSQVAEMLDRHGWSASKLWNVANYHSRNVWEDTGEIPDHGDLKDELKTHPKYKGLHSQSSQRVLEELAEAFNSWYGKRKSDSRANP
PGYRKKNYYDQHGRRVHEEHPRSTVTWKQNGIKHDAKNNRVRLSKGANHKEHPRAWEYILVEYETRPGVTVENLQQVRAVYDQSKERWELHLVCKDEIEA
PTAPGTETAGIDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGDRATRLHHKWSERRTHFFHSLAKHIVEKCIERGVGRINVGKLAGV
REDENGESKNWGKHGNLDLHGWAFDRFTKILTYKAKVEGIDVVEVSERDTSKTCCVCGRKDDSQRVERGLYVCDECDAAFNADVNGAENIRLNINEAESN
SESPPGLDGNRSTGWLAQPGVYLHDLSSGFQPQEQVVDCKP

 

Blast result :
Comments
ISHbo10 is 95% aa similar to ISHarch11.
References
1] Pfeiffer, F. (2015) Direct submission
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159