ISHbo10
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001690 | ND | Halogeometricum borinquense | Halogeometricum borinquense DSM 11551 |
DNA section
IS Length : 1543 bp
Ends
Left end : ACAGAATCGAGGAGAATACCTGACCCTAAAGGGTCAGGATGAATCTGACAACGACTCCACAACCCACCGTTGATGGCAGGGCCGGATATTCCACCATTCT II struct. : Yes
Right end : CCAACCGCAGGAACAAGTGGTAGACTGCAAACCTTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTATTCGGCCAG | TTAT | CCACGGTCATTT | tcaa |
DNA sequence
ACAGAATCGAGGAGAATACCTGACCCTAAAGGGTCAGGATGAATCTGACAACGACTCCACAACCCACCGTTGATGGCAGGGCCGGATATTCCACCATTCT
CAATCCGAATATTTACTAGAGACGCGAGTATAAGTGCTTATACAGACGTTCAGAATGCTGGAAGTCCACCGCACCCACCGAGCGAAAATCCTCAACCACT
CCCAAGTGGCTGAGATGCTCGACCGGCACGGGTGGTCGGCCAGTAAGCTCTGGAACGTCGCCAACTACCACTCCCGCAACGTGTGGGAGGATACGGGTGA
GATTCCCGACCACGGCGACCTCAAAGACGAGTTGAAGACCCATCCAAAATACAAGGGACTGCATAGTCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCT
GAAGCCTTCAACTCGTGGTACGGTAAGAGGAAGTCTGACAGTCGAGCGAATCCGCCCGGCTACCGCAAGAAAAACTACTACGATCAACATGGTCGTCGCG
TCCACGAAGAACACCCTCGCTCCACTGTAACGTGGAAGCAAAACGGCATCAAACACGACGCGAAAAACAACCGCGTTCGCCTCTCGAAGGGCGCGAATCA
CAAGGAACACCCCCGAGCATGGGAATACATCCTTGTCGAATACGAGACACGACCCGGCGTCACGGTCGAAAACCTGCAACAAGTCCGTGCCGTCTACGAC
CAATCAAAGGAGCGGTGGGAACTGCACCTCGTCTGTAAAGACGAAATCGAGGCGCCCACCGCTCCCGGTACCGAGACGGCAGGTATCGACCTCGGTATCT
GCAACTTCGCCGCTGTCGCATACAGCACCGAGGAAGCCGACTTGTACCCCGGCAACCGTCTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCAA
GTGCGACGACTCGGGTGGCGATAGGGCCACGCGACTTCATCACAAGTGGTCGGAGCGCCGCACGCACTTCTTTCACTCCTTAGCGAAACACATTGTGGAG
AAGTGTATCGAGCGGGGCGTGGGTCGCATCAACGTCGGGAAGCTCGCTGGTGTCCGCGAGGATGAGAACGGCGAGTCAAAGAACTGGGGAAAGCACGGGA
ACCTCGACTTACACGGGTGGGCGTTCGACCGCTTCACCAAGATTCTCACGTACAAAGCCAAGGTTGAGGGCATTGATGTCGTAGAGGTTTCAGAGCGCGA
CACGAGTAAGACGTGTTGTGTCTGCGGTAGGAAAGACGACAGTCAGCGTGTTGAACGCGGCCTGTACGTGTGTGATGAGTGTGACGCGGCGTTCAACGCT
GACGTGAACGGGGCGGAGAACATCCGTCTCAACATCAACGAAGCAGAAAGTAACTCCGAGTCTCCGCCCGGTTTGGACGGGAATAGGAGTACCGGCTGGT
TGGCACAGCCCGGAGTCTACCTTCATGACTTGTCCAGCGGATTCCAACCGCAGGAACAAGTGGTAGACTGCAAACCTTAATATCCCAATCCAGCGGTGCG
GTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA
CAATCCGAATATTTACTAGAGACGCGAGTATAAGTGCTTATACAGACGTTCAGAATGCTGGAAGTCCACCGCACCCACCGAGCGAAAATCCTCAACCACT
CCCAAGTGGCTGAGATGCTCGACCGGCACGGGTGGTCGGCCAGTAAGCTCTGGAACGTCGCCAACTACCACTCCCGCAACGTGTGGGAGGATACGGGTGA
GATTCCCGACCACGGCGACCTCAAAGACGAGTTGAAGACCCATCCAAAATACAAGGGACTGCATAGTCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCT
GAAGCCTTCAACTCGTGGTACGGTAAGAGGAAGTCTGACAGTCGAGCGAATCCGCCCGGCTACCGCAAGAAAAACTACTACGATCAACATGGTCGTCGCG
TCCACGAAGAACACCCTCGCTCCACTGTAACGTGGAAGCAAAACGGCATCAAACACGACGCGAAAAACAACCGCGTTCGCCTCTCGAAGGGCGCGAATCA
CAAGGAACACCCCCGAGCATGGGAATACATCCTTGTCGAATACGAGACACGACCCGGCGTCACGGTCGAAAACCTGCAACAAGTCCGTGCCGTCTACGAC
CAATCAAAGGAGCGGTGGGAACTGCACCTCGTCTGTAAAGACGAAATCGAGGCGCCCACCGCTCCCGGTACCGAGACGGCAGGTATCGACCTCGGTATCT
GCAACTTCGCCGCTGTCGCATACAGCACCGAGGAAGCCGACTTGTACCCCGGCAACCGTCTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCAA
GTGCGACGACTCGGGTGGCGATAGGGCCACGCGACTTCATCACAAGTGGTCGGAGCGCCGCACGCACTTCTTTCACTCCTTAGCGAAACACATTGTGGAG
AAGTGTATCGAGCGGGGCGTGGGTCGCATCAACGTCGGGAAGCTCGCTGGTGTCCGCGAGGATGAGAACGGCGAGTCAAAGAACTGGGGAAAGCACGGGA
ACCTCGACTTACACGGGTGGGCGTTCGACCGCTTCACCAAGATTCTCACGTACAAAGCCAAGGTTGAGGGCATTGATGTCGTAGAGGTTTCAGAGCGCGA
CACGAGTAAGACGTGTTGTGTCTGCGGTAGGAAAGACGACAGTCAGCGTGTTGAACGCGGCCTGTACGTGTGTGATGAGTGTGACGCGGCGTTCAACGCT
GACGTGAACGGGGCGGAGAACATCCGTCTCAACATCAACGAAGCAGAAAGTAACTCCGAGTCTCCGCCCGGTTTGGACGGGAATAGGAGTACCGGCTGGT
TGGCACAGCCCGGAGTCTACCTTCATGACTTGTCCAGCGGATTCCAACCGCAGGAACAAGTGGTAGACTGCAAACCTTAATATCCCAATCCAGCGGTGCG
GTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1326 bp | 441 aa | 155 | 1480 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHRAKILNHSQVAEMLDRHGWSASKLWNVANYHSRNVWEDTGEIPDHGDLKDELKTHPKYKGLHSQSSQRVLEELAEAFNSWYGKRKSDSRANP
PGYRKKNYYDQHGRRVHEEHPRSTVTWKQNGIKHDAKNNRVRLSKGANHKEHPRAWEYILVEYETRPGVTVENLQQVRAVYDQSKERWELHLVCKDEIEA
PTAPGTETAGIDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGDRATRLHHKWSERRTHFFHSLAKHIVEKCIERGVGRINVGKLAGV
REDENGESKNWGKHGNLDLHGWAFDRFTKILTYKAKVEGIDVVEVSERDTSKTCCVCGRKDDSQRVERGLYVCDECDAAFNADVNGAENIRLNINEAESN
SESPPGLDGNRSTGWLAQPGVYLHDLSSGFQPQEQVVDCKP
PGYRKKNYYDQHGRRVHEEHPRSTVTWKQNGIKHDAKNNRVRLSKGANHKEHPRAWEYILVEYETRPGVTVENLQQVRAVYDQSKERWELHLVCKDEIEA
PTAPGTETAGIDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGDRATRLHHKWSERRTHFFHSLAKHIVEKCIERGVGRINVGKLAGV
REDENGESKNWGKHGNLDLHGWAFDRFTKILTYKAKVEGIDVVEVSERDTSKTCCVCGRKDDSQRVERGLYVCDECDAAFNADVNGAENIRLNINEAESN
SESPPGLDGNRSTGWLAQPGVYLHDLSSGFQPQEQVVDCKP
Blast result :
Comments
ISHbo10 is 95% aa similar to ISHarch11.
References
1] Pfeiffer, F. (2015) Direct submission
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159