ISHarch14
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 698 bp
Ends
IR Length : 15/17
IRL : GGTAGTGTTCAGATAAGGATTAACGAGTGAGGCGTTGCGTTTTCTGAGTG
IRR : CATAGTGTTCAGATAAGCTGATTCCATGCGAAGCTGAATGATCTGAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAGAGGAGTGG | GACGGCGA | GGACCCATTCTT | 8 |
DNA sequence
GGTAGTGTTCAGATAAGGATTAACGAGTGAGGCGTTGCGTTTTCTGAGTGATCTATGCCCGAAAACGCTAGCCTCAGCGGTAATATCGACCAGATTGACT
TAGATTTTGTGGAGCGAGAAGCGACACCGCAACTACTGATGAAGTTGAGTATTCAGCTGCATCTGGCGGGACTATCGCTTTCGAATACTGTGTCTGTTCT
TGATATATTCGGTGTCAAGCGTGCGCGTTCGACCGTTCATAATTGGGTTCACAAGGCTGATTTACAGCTCGAAGATGGGCGATCACCGGATCACATTGCG
GTCGACGAAACGGTGATCCAACTCAATGATGAGCAGTACTGGCTGTACGCTGCTGTCGATCCAGAAACAAACGAACTACTGCATACAAAGCTTAGACCGA
CGACTACGAAGGTCCTTGCACATTCATTTCTTACCGAACTTACTGAGAAACACGACGTCAGCGACGCCGTGTTTCTCGTCGATGGCTCGCATTCGTTACA
AGCTGCATGTCACCGACAGGGATTCGATTTTAGATACGAAAAACATGGAAATCGGAACGCTGTCGAACGTGTATTTAGAGAGATAAAACGCCGAACTGTC
ACGTTCTCAAACTGTTTCAGCAACGTCGAAGCCGAAACAGCCGACGATTGGCTCAGATCATTCAGCTTCGCATGGAATCAGCTTATCTGAACACTATG
TAGATTTTGTGGAGCGAGAAGCGACACCGCAACTACTGATGAAGTTGAGTATTCAGCTGCATCTGGCGGGACTATCGCTTTCGAATACTGTGTCTGTTCT
TGATATATTCGGTGTCAAGCGTGCGCGTTCGACCGTTCATAATTGGGTTCACAAGGCTGATTTACAGCTCGAAGATGGGCGATCACCGGATCACATTGCG
GTCGACGAAACGGTGATCCAACTCAATGATGAGCAGTACTGGCTGTACGCTGCTGTCGATCCAGAAACAAACGAACTACTGCATACAAAGCTTAGACCGA
CGACTACGAAGGTCCTTGCACATTCATTTCTTACCGAACTTACTGAGAAACACGACGTCAGCGACGCCGTGTTTCTCGTCGATGGCTCGCATTCGTTACA
AGCTGCATGTCACCGACAGGGATTCGATTTTAGATACGAAAAACATGGAAATCGGAACGCTGTCGAACGTGTATTTAGAGAGATAAAACGCCGAACTGTC
ACGTTCTCAAACTGTTTCAGCAACGTCGAAGCCGAAACAGCCGACGATTGGCTCAGATCATTCAGCTTCGCATGGAATCAGCTTATCTGAACACTATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 55 | 690 | + | No |
Chemistry : DDE
ORF sequence :
MPENASLSGNIDQIDLDFVEREATPQLLMKLSIQLHLAGLSLSNTVSVLDIFGVKRARSTVHNWVHKADLQLEDGRSPDHIAVDETVIQLNDEQYWLYAA
VDPETNELLHTKLRPTTTKVLAHSFLTELTEKHDVSDAVFLVDGSHSLQAACHRQGFDFRYEKHGNRNAVERVFREIKRRTVTFSNCFSNVEAETADDWL
RSFSFAWNQLI
VDPETNELLHTKLRPTTTKVLAHSFLTELTEKHDVSDAVFLVDGSHSLQAACHRQGFDFRYEKHGNRNAVERVFREIKRRTVTFSNCFSNVEAETADDWL
RSFSFAWNQLI
Blast result :
Comments
ISHarch14 is 94% aa similar to ISH15.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank