ISHarch14

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 698 bp

Ends


IR Length : 15/17

IRL : GGTAGTGTTCAGATAAGGATTAACGAGTGAGGCGTTGCGTTTTCTGAGTG
IRR : CATAGTGTTCAGATAAGCTGATTCCATGCGAAGCTGAATGATCTGAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GAAGAGGAGTGGGACGGCGAGGACCCATTCTT8

DNA sequence

GGTAGTGTTCAGATAAGGATTAACGAGTGAGGCGTTGCGTTTTCTGAGTGATCTATGCCCGAAAACGCTAGCCTCAGCGGTAATATCGACCAGATTGACT
TAGATTTTGTGGAGCGAGAAGCGACACCGCAACTACTGATGAAGTTGAGTATTCAGCTGCATCTGGCGGGACTATCGCTTTCGAATACTGTGTCTGTTCT
TGATATATTCGGTGTCAAGCGTGCGCGTTCGACCGTTCATAATTGGGTTCACAAGGCTGATTTACAGCTCGAAGATGGGCGATCACCGGATCACATTGCG
GTCGACGAAACGGTGATCCAACTCAATGATGAGCAGTACTGGCTGTACGCTGCTGTCGATCCAGAAACAAACGAACTACTGCATACAAAGCTTAGACCGA
CGACTACGAAGGTCCTTGCACATTCATTTCTTACCGAACTTACTGAGAAACACGACGTCAGCGACGCCGTGTTTCTCGTCGATGGCTCGCATTCGTTACA
AGCTGCATGTCACCGACAGGGATTCGATTTTAGATACGAAAAACATGGAAATCGGAACGCTGTCGAACGTGTATTTAGAGAGATAAAACGCCGAACTGTC
ACGTTCTCAAACTGTTTCAGCAACGTCGAAGCCGAAACAGCCGACGATTGGCTCAGATCATTCAGCTTCGCATGGAATCAGCTTATCTGAACACTATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa55690+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPENASLSGNIDQIDLDFVEREATPQLLMKLSIQLHLAGLSLSNTVSVLDIFGVKRARSTVHNWVHKADLQLEDGRSPDHIAVDETVIQLNDEQYWLYAA
VDPETNELLHTKLRPTTTKVLAHSFLTELTEKHDVSDAVFLVDGSHSLQAACHRQGFDFRYEKHGNRNAVERVFREIKRRTVTFSNCFSNVEAETADDWL
RSFSFAWNQLI

 

Blast result :
Comments
ISHarch14 is 94% aa similar to ISH15.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank