ISHarch13

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 698 bp

Ends


IR Length : 15/17

IRL : GGCGGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGTTTTCAAAGTG
IRR : GGTAGTGTTCAGATAAGCTGATTCCATGCGAAAGCGAACGATCTCAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAACTGTGGGGTACTTTCTGGCGGGAACAGGCCAAACGTT0

DNA sequence

GGCGGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGTTTTCAAAGTGACCTATGCCCGAAAACGACCGCCTCAGCGGCTGTTTAGACGAGATGAACG
TAGAGTTTGTGGAGCGAGAAGCAACACCGCGGCTATTGATGAAGCTCAGTATTCAGCTTCATCTGTCTGGATTATCGCTTTCGAATACTGTTTCGTTTCT
TGAGGTGTTCGGTGTTGATCGGGTACGATCCACAGTTCATAACTGGGTTCACAAGGCCGATCTACAGCCGGAAGCTGGTCGGAGCCCGAATCACGTTGCG
GTTGATGAAACTGTGATTCAGCTTGATGATCAGCAATATTGGCTGTACGCTGCCGTCGATCCTGAAACAAATAATTTGCTACACACAAAGCTTGAACCGA
CAAGAAATAACGCTCTCACAGATCGGTTTTTCTCTGAAATCCGCGAAAAACACGACGTTGATGACGCGATCTTTCTCGTCGATGGTGCGGCTCCACTTCA
GCAAGCCTGTCGCAAACACGATCTCGATTTTAGATACGAACGACATGGAAATCGAAACAGCGTCGAACGTGTCTTCCGTGAGGTAAAACGCAGAACAACC
AATTTCTCAAACTGTTTCAGCAACGCCAAAGCAGAAACTGCTAACGAGTGGCTGAGATCGTTCGCTTTCGCATGGAATCAGCTTATCTGAACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa55690+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPENDRLSGCLDEMNVEFVEREATPRLLMKLSIQLHLSGLSLSNTVSFLEVFGVDRVRSTVHNWVHKADLQPEAGRSPNHVAVDETVIQLDDQQYWLYAA
VDPETNNLLHTKLEPTRNNALTDRFFSEIREKHDVDDAIFLVDGAAPLQQACRKHDLDFRYERHGNRNSVERVFREVKRRTTNFSNCFSNAKAETANEWL
RSFAFAWNQLI

 

Blast result :
Comments
ISHarch13 is 97% aa similar to ISHarch12.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank