ISHarch12

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 698 bp

Ends


IR Length : 15/17

IRL : GGCGGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGTTTTCAAAGTG
IRR : GGTAGTGTTCAGATAAGCTGATTCCATGCGAAAGCGAACGATCTCAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AATATCGAGGGTGTCATACAACAGTTTACACA8
GGAGTACCGGCTGGTTGGCACAGCCATCAGTC8
TCACGGTAGAGGT/CCACAGGTGGGCCCACACGCT9
GGGTCCCGCACGGCGGGAACCGTTGAGG TGGCGAAGAT0
CGATGGCGTCCGCGTTGAGTTGGAGCAGGCTTGGTTGA0
AGCTCTCGCCC CGTTGGAGGAGTGTGACGGCACGAACTTT0
AATAATCGTGGGAGTGTGACACTTTCTGTGGACAAAATGG0

DNA sequence

GGCGGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGTTTTCAAAGTGACCTATGCCCGAAAACGCTCGCCTCAGCGGCTGTTTAGACGAGATCAACG
TAGAGTTTGTGGAGCGAGAAGCAACACCGCAGCTGTTGATGAAACTCAGTATTCAGCTTCATTTGTCTGGACTATCGCTTTCGAATACTGTTTCATTTCT
TGAAGTGTTCGGTGTTAATCGGGTTCGGTCCACGGTTCACAACTGGGTTCATAAAGCCGATCTACAGCCAGAAACTGGACGGAGCCCGAATCACGTTGCG
GTTGATGAAACCGTGATTCAGCTTGATGATGAGCAATATTGGCTGTACGCCGCCGTCGATCCTGAATCGAACGATTTGCTCCATACAAAGCTTGAACCGA
CAAGAACAAACGTTATTGCGGATCAGTTTTTCGCGAATCTCCGCGAAAAACACGACGTTGATGACGCGATCTTTCTCGTCGATGGTGCGGCTCCACTTCA
GCAAGCCTGTCGCAAACACGATCTCGATTTTAGATACGAACGACATGGAAATCGAAACAGCGTCGAACGTGTCTTCCGTGAGGTAAAACGCAGAACAACC
AATTTCTCAAACTGTTTCAGCAACGCCAAAGCAGAAACTGCTAACGAGTGGCTGAGATCGTTCGCTTTCGCATGGAATCAGCTTATCTGAACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa55690+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPENARLSGCLDEINVEFVEREATPQLLMKLSIQLHLSGLSLSNTVSFLEVFGVNRVRSTVHNWVHKADLQPETGRSPNHVAVDETVIQLDDEQYWLYAA
VDPESNDLLHTKLEPTRTNVIADQFFANLREKHDVDDAIFLVDGAAPLQQACRKHDLDFRYERHGNRNSVERVFREVKRRTTNFSNCFSNAKAETANEWL
RSFAFAWNQLI

 

Blast result :
Comments
ISHarch11 is 92% aa similar to ISNamo11.
It should be noted that there are two perfect target duplications (insertion sites 1 and 2), one imperfect target duplication (insertion site 3) and 3 shifted target duplications: CGTTGA (perfect, follows 4rd element, precedes 5th element), GTTGGAGC/GTTGGAGG (imperfect, follows 5th element, precedes 6th element), and AGTGTGAC (perfect, follows 6th element, precedes 7th element). The sequence following the 7th element (ACTTTCTG) forms a perfect shifted target duplication with the sequence preceding the element submitted as ISHarch13. The sequence preceding the 4th element (GCGGGAAC) forms a perfect shifted target duplication with the sequence following ISHarch13.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank