ISHarch12
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 698 bp
Ends
IR Length : 15/17
IRL : GGCGGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGTTTTCAAAGTG
IRR : GGTAGTGTTCAGATAAGCTGATTCCATGCGAAAGCGAACGATCTCAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATATCGAGGGT | GTCATACA | ACAGTTTACACA | 8 |
GGAGTACCGGCT | GGTTGGCA | CAGCCATCAGTC | 8 |
TCACGGTAGAGG | T/CCACAGGTG | GGCCCACACGCT | 9 |
GGGTCCCGCACGGCGGGAAC | CGTTGAGG TGGCGAAGAT | 0 | |
CGATGGCGTCCGCGTTGA | GTTGGAGCAGGCTTGGTTGA | 0 | |
AGCTCTCGCCC CGTTGGAGG | AGTGTGACGGCACGAACTTT | 0 | |
AATAATCGTGGGAGTGTGAC | ACTTTCTGTGGACAAAATGG | 0 |
DNA sequence
GGCGGTGTTCAGATAAGGATTGAAAGGTGAGGCGGTGCGTTTTCAAAGTGACCTATGCCCGAAAACGCTCGCCTCAGCGGCTGTTTAGACGAGATCAACG
TAGAGTTTGTGGAGCGAGAAGCAACACCGCAGCTGTTGATGAAACTCAGTATTCAGCTTCATTTGTCTGGACTATCGCTTTCGAATACTGTTTCATTTCT
TGAAGTGTTCGGTGTTAATCGGGTTCGGTCCACGGTTCACAACTGGGTTCATAAAGCCGATCTACAGCCAGAAACTGGACGGAGCCCGAATCACGTTGCG
GTTGATGAAACCGTGATTCAGCTTGATGATGAGCAATATTGGCTGTACGCCGCCGTCGATCCTGAATCGAACGATTTGCTCCATACAAAGCTTGAACCGA
CAAGAACAAACGTTATTGCGGATCAGTTTTTCGCGAATCTCCGCGAAAAACACGACGTTGATGACGCGATCTTTCTCGTCGATGGTGCGGCTCCACTTCA
GCAAGCCTGTCGCAAACACGATCTCGATTTTAGATACGAACGACATGGAAATCGAAACAGCGTCGAACGTGTCTTCCGTGAGGTAAAACGCAGAACAACC
AATTTCTCAAACTGTTTCAGCAACGCCAAAGCAGAAACTGCTAACGAGTGGCTGAGATCGTTCGCTTTCGCATGGAATCAGCTTATCTGAACACTACC
TAGAGTTTGTGGAGCGAGAAGCAACACCGCAGCTGTTGATGAAACTCAGTATTCAGCTTCATTTGTCTGGACTATCGCTTTCGAATACTGTTTCATTTCT
TGAAGTGTTCGGTGTTAATCGGGTTCGGTCCACGGTTCACAACTGGGTTCATAAAGCCGATCTACAGCCAGAAACTGGACGGAGCCCGAATCACGTTGCG
GTTGATGAAACCGTGATTCAGCTTGATGATGAGCAATATTGGCTGTACGCCGCCGTCGATCCTGAATCGAACGATTTGCTCCATACAAAGCTTGAACCGA
CAAGAACAAACGTTATTGCGGATCAGTTTTTCGCGAATCTCCGCGAAAAACACGACGTTGATGACGCGATCTTTCTCGTCGATGGTGCGGCTCCACTTCA
GCAAGCCTGTCGCAAACACGATCTCGATTTTAGATACGAACGACATGGAAATCGAAACAGCGTCGAACGTGTCTTCCGTGAGGTAAAACGCAGAACAACC
AATTTCTCAAACTGTTTCAGCAACGCCAAAGCAGAAACTGCTAACGAGTGGCTGAGATCGTTCGCTTTCGCATGGAATCAGCTTATCTGAACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 55 | 690 | + | No |
Chemistry : DDE
ORF sequence :
MPENARLSGCLDEINVEFVEREATPQLLMKLSIQLHLSGLSLSNTVSFLEVFGVNRVRSTVHNWVHKADLQPETGRSPNHVAVDETVIQLDDEQYWLYAA
VDPESNDLLHTKLEPTRTNVIADQFFANLREKHDVDDAIFLVDGAAPLQQACRKHDLDFRYERHGNRNSVERVFREVKRRTTNFSNCFSNAKAETANEWL
RSFAFAWNQLI
VDPESNDLLHTKLEPTRTNVIADQFFANLREKHDVDDAIFLVDGAAPLQQACRKHDLDFRYERHGNRNSVERVFREVKRRTTNFSNCFSNAKAETANEWL
RSFAFAWNQLI
Blast result :
Comments
ISHarch11 is 92% aa similar to ISNamo11.
It should be noted that there are two perfect target duplications (insertion sites 1 and 2), one imperfect target duplication (insertion site 3) and 3 shifted target duplications: CGTTGA (perfect, follows 4rd element, precedes 5th element), GTTGGAGC/GTTGGAGG (imperfect, follows 5th element, precedes 6th element), and AGTGTGAC (perfect, follows 6th element, precedes 7th element). The sequence following the 7th element (ACTTTCTG) forms a perfect shifted target duplication with the sequence preceding the element submitted as ISHarch13. The sequence preceding the 4th element (GCGGGAAC) forms a perfect shifted target duplication with the sequence following ISHarch13.
It should be noted that there are two perfect target duplications (insertion sites 1 and 2), one imperfect target duplication (insertion site 3) and 3 shifted target duplications: CGTTGA (perfect, follows 4rd element, precedes 5th element), GTTGGAGC/GTTGGAGG (imperfect, follows 5th element, precedes 6th element), and AGTGTGAC (perfect, follows 6th element, precedes 7th element). The sequence following the 7th element (ACTTTCTG) forms a perfect shifted target duplication with the sequence preceding the element submitted as ISHarch13. The sequence preceding the 4th element (GCGGGAAC) forms a perfect shifted target duplication with the sequence following ISHarch13.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank