ISHarch11
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1594 bp
Ends
Left end : ACAGAATCAAGGAGAATACCCGCGCCTTTAGGCGTCCTCAAAACGCTTTGCGTTCTGATGTGCGAACGAGACGCTCTGCGTCTCGTCAACGCGGGATGAA II struct. : Yes
Right end : CCAACCTCGGGCAGAGGTGGTAGACTGCAAACCCTAATATCCCAATCAAGCGGTGCGGTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGCGTTTCACGG | TTGT | TCGGTCGCAGAC | tcaa |
TGGCGGGAGGAG | TTGT | TCTCGCGATTAC | tcaa |
DNA sequence
ACAGAATCAAGGAGAATACCCGCGCCTTTAGGCGTCCTCAAAACGCTTTGCGTTCTGATGTGCGAACGAGACGCTCTGCGTCTCGTCAACGCGGGATGAA
TCCGACAACGCCTCCACAATCCACCGTCGATAGCATTCTTGGATATTCCACCGTTTTCAATCCGAGGCTTTACAATAACAGAGAATATAAGTGGTTATAC
AGGCGTTCAGAATGCTGGAAGTCCACCGTACCCATCGGGCAAAAATCCTCAACCATGCACAGGTAGATGACTCGCTCGACCGACACGGGTGGAGTGCCAG
CAAACTCTGGAACGTCGCAAACTACCACTCCCGCGAAATGTGGGACGAAACCGGGGAGATCCCCGACCACGGCGACCTCAAAAACGAGTTGAAAGGTCAC
ACCAAATACAAGGGACTGCACAGTCAGTCCAGTCAGCGCGTTCTGGAGGAGCTCGCTGAATCCTTCAACTCGTGGTACGGTAAGAGGAAGTCCGATAATC
GGGCGAATCCACCCGGCTACCGCAAGAAAAACTACTACGACAAACAAGGCCGTCGCGTCCACGAAGAACACCCACGCAGTACGGTGACGTGGAAGCAAAA
CGGCATCAAACACGACACCAAGAACAATCGAGTCCGCCTCTCGAAGGGTGCGAATCACAAGGAACACCCCAAAGCATGGGAATACATCCTTGTCGAATAT
GAGACACGCCCCGGCGTCACGGTTGAGAACCTACAACAGGTTCGTGCCGTCTACGACAAGGCGAAAGGTCGGTGGGAACTACACCTCGTCTGCAAAAACG
AAGTTGAGACTCCCGACGCTCCCGGTAACGAGACAGCGGGTATCGACCTTGGTATCTGTAACTTCGCGGCTGTCTCGTACAGCACCGAGGAAGCCGACCT
ATACCCCGGAAACCGTCTGAAACAGGACGGCTACTATTTTCCGAAAGAAATCGCCAAGTGCGACGACTCGGGTGGCGAACGGGCTACTCGGTTGCACCAC
AAGTGGTCGGAGCGCCGAACCCACTTCTTCCACTCCCTCGCCAAGCACATCGTCGAGAAGTGTATCGAGAACGATGTTTGTCGAATCAACGTTGGCAAGC
TCGCTGGTGTCCGAGAGGACGAGAACGGTGAGTCGAAGAGCTGGGGTCGTCACGGCAACCTTGACCTGCACGGGTGGGCGTTCGACCGCTTCACGTCGAT
TGTCACGTACAAGGCGAAGGTCGAGGGTATCGAAGTCGTAGAACTGTCTGAGAGAGACACCTCAAAGACGTGTTGCGTCTGCGGTAGAGAAGACGATAGT
CAGCGTGTTGAGCGTGGGTTGTACGTGTGTGAGGAGTGTGATGCGGCGTTCAACGCTGACGTGAACGGGGCGGAGAACATCCGTCTCGACTTGAACCAAA
GTAACTCCGAGTCTCCGCCCGATTTAGGTGGGGATAGGAGTACCGGCTGGTTGGCACAGCCATCAGTCTACCTTCATGACCTCTCCCGAGGATTCCAACC
TCGGGCAGAGGTGGTAGACTGCAAACCCTAATATCCCAATCAAGCGGTGCGGTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA
TCCGACAACGCCTCCACAATCCACCGTCGATAGCATTCTTGGATATTCCACCGTTTTCAATCCGAGGCTTTACAATAACAGAGAATATAAGTGGTTATAC
AGGCGTTCAGAATGCTGGAAGTCCACCGTACCCATCGGGCAAAAATCCTCAACCATGCACAGGTAGATGACTCGCTCGACCGACACGGGTGGAGTGCCAG
CAAACTCTGGAACGTCGCAAACTACCACTCCCGCGAAATGTGGGACGAAACCGGGGAGATCCCCGACCACGGCGACCTCAAAAACGAGTTGAAAGGTCAC
ACCAAATACAAGGGACTGCACAGTCAGTCCAGTCAGCGCGTTCTGGAGGAGCTCGCTGAATCCTTCAACTCGTGGTACGGTAAGAGGAAGTCCGATAATC
GGGCGAATCCACCCGGCTACCGCAAGAAAAACTACTACGACAAACAAGGCCGTCGCGTCCACGAAGAACACCCACGCAGTACGGTGACGTGGAAGCAAAA
CGGCATCAAACACGACACCAAGAACAATCGAGTCCGCCTCTCGAAGGGTGCGAATCACAAGGAACACCCCAAAGCATGGGAATACATCCTTGTCGAATAT
GAGACACGCCCCGGCGTCACGGTTGAGAACCTACAACAGGTTCGTGCCGTCTACGACAAGGCGAAAGGTCGGTGGGAACTACACCTCGTCTGCAAAAACG
AAGTTGAGACTCCCGACGCTCCCGGTAACGAGACAGCGGGTATCGACCTTGGTATCTGTAACTTCGCGGCTGTCTCGTACAGCACCGAGGAAGCCGACCT
ATACCCCGGAAACCGTCTGAAACAGGACGGCTACTATTTTCCGAAAGAAATCGCCAAGTGCGACGACTCGGGTGGCGAACGGGCTACTCGGTTGCACCAC
AAGTGGTCGGAGCGCCGAACCCACTTCTTCCACTCCCTCGCCAAGCACATCGTCGAGAAGTGTATCGAGAACGATGTTTGTCGAATCAACGTTGGCAAGC
TCGCTGGTGTCCGAGAGGACGAGAACGGTGAGTCGAAGAGCTGGGGTCGTCACGGCAACCTTGACCTGCACGGGTGGGCGTTCGACCGCTTCACGTCGAT
TGTCACGTACAAGGCGAAGGTCGAGGGTATCGAAGTCGTAGAACTGTCTGAGAGAGACACCTCAAAGACGTGTTGCGTCTGCGGTAGAGAAGACGATAGT
CAGCGTGTTGAGCGTGGGTTGTACGTGTGTGAGGAGTGTGATGCGGCGTTCAACGCTGACGTGAACGGGGCGGAGAACATCCGTCTCGACTTGAACCAAA
GTAACTCCGAGTCTCCGCCCGATTTAGGTGGGGATAGGAGTACCGGCTGGTTGGCACAGCCATCAGTCTACCTTCATGACCTCTCCCGAGGATTCCAACC
TCGGGCAGAGGTGGTAGACTGCAAACCCTAATATCCCAATCAAGCGGTGCGGTGCCGTGGGATTCCCGCGTGTTCACGCGCGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 439 aa | 212 | 1531 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHRAKILNHAQVDDSLDRHGWSASKLWNVANYHSREMWDETGEIPDHGDLKNELKGHTKYKGLHSQSSQRVLEELAESFNSWYGKRKSDNRANP
PGYRKKNYYDKQGRRVHEEHPRSTVTWKQNGIKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTVENLQQVRAVYDKAKGRWELHLVCKNEVET
PDAPGNETAGIDLGICNFAAVSYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGERATRLHHKWSERRTHFFHSLAKHIVEKCIENDVCRINVGKLAGV
REDENGESKSWGRHGNLDLHGWAFDRFTSIVTYKAKVEGIEVVELSERDTSKTCCVCGREDDSQRVERGLYVCEECDAAFNADVNGAENIRLDLNQSNSE
SPPDLGGDRSTGWLAQPSVYLHDLSRGFQPRAEVVDCKP
PGYRKKNYYDKQGRRVHEEHPRSTVTWKQNGIKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTVENLQQVRAVYDKAKGRWELHLVCKNEVET
PDAPGNETAGIDLGICNFAAVSYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGERATRLHHKWSERRTHFFHSLAKHIVEKCIENDVCRINVGKLAGV
REDENGESKSWGRHGNLDLHGWAFDRFTSIVTYKAKVEGIEVVELSERDTSKTCCVCGREDDSQRVERGLYVCEECDAAFNADVNGAENIRLDLNQSNSE
SPPDLGGDRSTGWLAQPSVYLHDLSRGFQPRAEVVDCKP
Blast result :
Comments
ISHarch11 is 94% aa similar to ISNamo20.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank