ISHje2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002063 | ND | Halalkalicoccus jeotgali | Halalkalicoccus jeotgali B3 plasmid 1 |
DNA section
IS Length : 1837 bp
Ends
Left end : GTCTGAATTGAGGCGCTAAGACCCCTTCCTCAGCGAGCGCCGACCGAAGGGAAGGCGCGAGCAGGGAGGGGATACAGCGACGCACGGTTTTCATACACTC II struct. : No
Right end : GGATACACCTGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCTACCCTCAAGGAGCGAACGGCTGATGCCGTGAGCGAGTAGGGTAGGGCAGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCAATGTACG | TTCT | CCGTTGGACTCC |
DNA sequence
GTCTGAATTGAGGCGCTAAGACCCCTTCCTCAGCGAGCGCCGACCGAAGGGAAGGCGCGAGCAGGGAGGGGATACAGCGACGCACGGTTTTCATACACTC
TACGGTTGCAGGCCCACAGACCCACGCAGTCGTAACGTTTTTTCAGTAGGGTAGCATAGTAGTGACTGAACCCAATGGAATACGACCTCGACTCGGGAGC
GCACTCGACGTTTTCCCTGCACTACCACCTGATACTCACCACAAAGTATCGGTGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCGCGAGGTCATC
AGCGGGTTCACTGACAACTACGGTGTCGAACTGACGAACCTCGACGGAAAGGACGACCACGTTCACATCCTGTTCCGAGCAAAACCAACCACAGACCTCG
TGAAGTTCATCAACACAGTCAAGGGCGCAACCGCCCGCCGTATCCGCAACGAGTACGCGGACGAACTGAAGACCGACCTGTGGGGCGACTCGTTCTGGAA
CGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGCTGCACCAGTACATCGAGAACCAACGCGAGTAGAATGTACTACGCCTACAAGTA
CCGTCTCAAGCCGTCCGACGCCCAACATGAGGAGTTGGACCGCCACCGAGATATTTGTAGGCAACTCTACAACCATACGCTTTACCGACTCAATGAGTAC
CAAGACGAACACGGCGAACTGCCGTCCATGACCACCCTGCGGTCGGAACTACCCGACCTCAAGACGTGGTGGGACGGCCTCTCCGACGTGTATTCGAAGG
TTCTCCAAACAGTTGTGGAACGCCTGTTCGACAATCTCAAAGGACTCTCCAAACTCAAGAAGAATGGCTACGGCGTCGGCCAACTCAAGTGGAAGCCACC
ACGAGAATTCCGCAGTTTCACGTACAGTCAGTCTGGCTTCAAGCTCGACAAGAAGGGCGGTCAGACTGTGCTGTCGCTCTCGAAACTTGCGGACATATCG
ATTCGGCTCCACCGTGACATCCCTGGCGACGCAAAGCTCAAGCAAGTCACGCTCAAGAAGGAACCGACGGGCGAGTGGTTCGCCACCTTCGGCGTTCAAA
TCGACCGAGAACCGCCTGAGCCGCCTGAGAATCCCGAGAAGTGTGTCGGTATCGACGTGGGGATTCTCAAGTACGCCTACGACACCGACGGCACGGCGGT
CAGGTCGCTTGACCTCTCGAACGAACGTGAACGCTTGGAGCGCGAGCAACGGAAGCTCTCGCGGAAGCAACACGGGTCGAACAACTACGAGAAGCAACGT
CGGCGAGTTGCGGAGTGTTATGCCGACCTCCGTCGGAAGCGCCGCGACTTCTTGCACAAACTCTCGGCGTACTACGCACGGGAGTACGACCTCGTGGCGG
TCGAAGACTTGAATGTGAAGGGGATGCTTGAATCTCCGTCGAACAGTCGCAATACGGCGTCTGCGGCGTGGCGAACGTTCCTCTCGGTGCTCGAATACAA
GTGCAAGCGAGAGGGGACGCACTGCGTGGCGGTCAACCCGAGAGGGACGACCAAAGAGTGCGCGTCCTGCGGCGTCTCAACGGAGAAATCGTTGTGGGTC
CGTGAACACTCCTGTCCTGCCTGCGGGTTCGAGGCGGACAGGGACGCGAACGCGGCGTGGAACATTCTTTCTCGCGGCCTCGAAGATATAGGAGTGGGAT
ACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCTACCCTCAAGGAGCGAAC
GGCTGATGCCGTGAGCGAGTAGGGTAGGGCAGTTCAC
TACGGTTGCAGGCCCACAGACCCACGCAGTCGTAACGTTTTTTCAGTAGGGTAGCATAGTAGTGACTGAACCCAATGGAATACGACCTCGACTCGGGAGC
GCACTCGACGTTTTCCCTGCACTACCACCTGATACTCACCACAAAGTATCGGTGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCGCGAGGTCATC
AGCGGGTTCACTGACAACTACGGTGTCGAACTGACGAACCTCGACGGAAAGGACGACCACGTTCACATCCTGTTCCGAGCAAAACCAACCACAGACCTCG
TGAAGTTCATCAACACAGTCAAGGGCGCAACCGCCCGCCGTATCCGCAACGAGTACGCGGACGAACTGAAGACCGACCTGTGGGGCGACTCGTTCTGGAA
CGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGCTGCACCAGTACATCGAGAACCAACGCGAGTAGAATGTACTACGCCTACAAGTA
CCGTCTCAAGCCGTCCGACGCCCAACATGAGGAGTTGGACCGCCACCGAGATATTTGTAGGCAACTCTACAACCATACGCTTTACCGACTCAATGAGTAC
CAAGACGAACACGGCGAACTGCCGTCCATGACCACCCTGCGGTCGGAACTACCCGACCTCAAGACGTGGTGGGACGGCCTCTCCGACGTGTATTCGAAGG
TTCTCCAAACAGTTGTGGAACGCCTGTTCGACAATCTCAAAGGACTCTCCAAACTCAAGAAGAATGGCTACGGCGTCGGCCAACTCAAGTGGAAGCCACC
ACGAGAATTCCGCAGTTTCACGTACAGTCAGTCTGGCTTCAAGCTCGACAAGAAGGGCGGTCAGACTGTGCTGTCGCTCTCGAAACTTGCGGACATATCG
ATTCGGCTCCACCGTGACATCCCTGGCGACGCAAAGCTCAAGCAAGTCACGCTCAAGAAGGAACCGACGGGCGAGTGGTTCGCCACCTTCGGCGTTCAAA
TCGACCGAGAACCGCCTGAGCCGCCTGAGAATCCCGAGAAGTGTGTCGGTATCGACGTGGGGATTCTCAAGTACGCCTACGACACCGACGGCACGGCGGT
CAGGTCGCTTGACCTCTCGAACGAACGTGAACGCTTGGAGCGCGAGCAACGGAAGCTCTCGCGGAAGCAACACGGGTCGAACAACTACGAGAAGCAACGT
CGGCGAGTTGCGGAGTGTTATGCCGACCTCCGTCGGAAGCGCCGCGACTTCTTGCACAAACTCTCGGCGTACTACGCACGGGAGTACGACCTCGTGGCGG
TCGAAGACTTGAATGTGAAGGGGATGCTTGAATCTCCGTCGAACAGTCGCAATACGGCGTCTGCGGCGTGGCGAACGTTCCTCTCGGTGCTCGAATACAA
GTGCAAGCGAGAGGGGACGCACTGCGTGGCGGTCAACCCGAGAGGGACGACCAAAGAGTGCGCGTCCTGCGGCGTCTCAACGGAGAAATCGTTGTGGGTC
CGTGAACACTCCTGTCCTGCCTGCGGGTTCGAGGCGGACAGGGACGCGAACGCGGCGTGGAACATTCTTTCTCGCGGCCTCGAAGATATAGGAGTGGGAT
ACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCTACCCTCAAGGAGCGAAC
GGCTGATGCCGTGAGCGAGTAGGGTAGGGCAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
405 bp | 134 aa | 175 | 579 | + | No |
Chemistry : Y1
ORF sequence :
MEYDLDSGAHSTFSLHYHLILTTKYRCGVLTEERTQFIREVISGFTDNYGVELTNLDGKDDHVHILFRAKPTTDLVKFINTVKGATARRIRNEYADELKT
DLWGDSFWNDSYCLISTGQVSLDVLHQYIENQRE
DLWGDSFWNDSYCLISTGQVSLDVLHQYIENQRE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 581 | 1822 | + | No |
AG : TnpB
ORF sequence :
MYYAYKYRLKPSDAQHEELDRHRDICRQLYNHTLYRLNEYQDEHGELPSMTTLRSELPDLKTWWDGLSDVYSKVLQTVVERLFDNLKGLSKLKKNGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADISIRLHRDIPGDAKLKQVTLKKEPTGEWFATFGVQIDREPPEPPENPEKCVGIDVGILKYAY
DTDGTAVRSLDLSNERERLEREQRKLSRKQHGSNNYEKQRRRVAECYADLRRKRRDFLHKLSAYYAREYDLVAVEDLNVKGMLESPSNSRNTASAAWRTF
LSVLEYKCKREGTHCVAVNPRGTTKECASCGVSTEKSLWVREHSCPACGFEADRDANAAWNILSRGLEDIGVGYSESTPVETALPVDTPVSAKRVVEAGS
PTLKERTADAVSE
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADISIRLHRDIPGDAKLKQVTLKKEPTGEWFATFGVQIDREPPEPPENPEKCVGIDVGILKYAY
DTDGTAVRSLDLSNERERLEREQRKLSRKQHGSNNYEKQRRRVAECYADLRRKRRDFLHKLSAYYAREYDLVAVEDLNVKGMLESPSNSRNTASAAWRTF
LSVLEYKCKREGTHCVAVNPRGTTKECASCGVSTEKSLWVREHSCPACGFEADRDANAAWNILSRGLEDIGVGYSESTPVETALPVDTPVSAKRVVEAGS
PTLKERTADAVSE
Blast result :
Comments
ISHje2 is 97% (TnpA : the transposase) aa similar to ISHmu6 and 96% (TnpB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Roh,S.W., Nam,Y.D., Nam,S.H., Choi,S.H., Park,H.S. and Bae,J.W. (2010) J. Bacteriol. 192 (17), 4528-4529
2] Roh,S.W., Nam,Y.D., Nam,S.H., Choi,S.H., Park,H.S. and Bae,J.W. (2010) J. Bacteriol. 192 (17), 4528-4529