ISHje2

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002063 ND Halalkalicoccus jeotgali
Halalkalicoccus jeotgali B3 plasmid 1
DNA section
IS Length : 1837 bp

Ends


Left end : GTCTGAATTGAGGCGCTAAGACCCCTTCCTCAGCGAGCGCCGACCGAAGGGAAGGCGCGAGCAGGGAGGGGATACAGCGACGCACGGTTTTCATACACTC II struct. : No
Right end : GGATACACCTGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCTACCCTCAAGGAGCGAACGGCTGATGCCGTGAGCGAGTAGGGTAGGGCAGTTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCAATGTACGTTCTCCGTTGGACTCC

DNA sequence

GTCTGAATTGAGGCGCTAAGACCCCTTCCTCAGCGAGCGCCGACCGAAGGGAAGGCGCGAGCAGGGAGGGGATACAGCGACGCACGGTTTTCATACACTC
TACGGTTGCAGGCCCACAGACCCACGCAGTCGTAACGTTTTTTCAGTAGGGTAGCATAGTAGTGACTGAACCCAATGGAATACGACCTCGACTCGGGAGC
GCACTCGACGTTTTCCCTGCACTACCACCTGATACTCACCACAAAGTATCGGTGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCGCGAGGTCATC
AGCGGGTTCACTGACAACTACGGTGTCGAACTGACGAACCTCGACGGAAAGGACGACCACGTTCACATCCTGTTCCGAGCAAAACCAACCACAGACCTCG
TGAAGTTCATCAACACAGTCAAGGGCGCAACCGCCCGCCGTATCCGCAACGAGTACGCGGACGAACTGAAGACCGACCTGTGGGGCGACTCGTTCTGGAA
CGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGCTGCACCAGTACATCGAGAACCAACGCGAGTAGAATGTACTACGCCTACAAGTA
CCGTCTCAAGCCGTCCGACGCCCAACATGAGGAGTTGGACCGCCACCGAGATATTTGTAGGCAACTCTACAACCATACGCTTTACCGACTCAATGAGTAC
CAAGACGAACACGGCGAACTGCCGTCCATGACCACCCTGCGGTCGGAACTACCCGACCTCAAGACGTGGTGGGACGGCCTCTCCGACGTGTATTCGAAGG
TTCTCCAAACAGTTGTGGAACGCCTGTTCGACAATCTCAAAGGACTCTCCAAACTCAAGAAGAATGGCTACGGCGTCGGCCAACTCAAGTGGAAGCCACC
ACGAGAATTCCGCAGTTTCACGTACAGTCAGTCTGGCTTCAAGCTCGACAAGAAGGGCGGTCAGACTGTGCTGTCGCTCTCGAAACTTGCGGACATATCG
ATTCGGCTCCACCGTGACATCCCTGGCGACGCAAAGCTCAAGCAAGTCACGCTCAAGAAGGAACCGACGGGCGAGTGGTTCGCCACCTTCGGCGTTCAAA
TCGACCGAGAACCGCCTGAGCCGCCTGAGAATCCCGAGAAGTGTGTCGGTATCGACGTGGGGATTCTCAAGTACGCCTACGACACCGACGGCACGGCGGT
CAGGTCGCTTGACCTCTCGAACGAACGTGAACGCTTGGAGCGCGAGCAACGGAAGCTCTCGCGGAAGCAACACGGGTCGAACAACTACGAGAAGCAACGT
CGGCGAGTTGCGGAGTGTTATGCCGACCTCCGTCGGAAGCGCCGCGACTTCTTGCACAAACTCTCGGCGTACTACGCACGGGAGTACGACCTCGTGGCGG
TCGAAGACTTGAATGTGAAGGGGATGCTTGAATCTCCGTCGAACAGTCGCAATACGGCGTCTGCGGCGTGGCGAACGTTCCTCTCGGTGCTCGAATACAA
GTGCAAGCGAGAGGGGACGCACTGCGTGGCGGTCAACCCGAGAGGGACGACCAAAGAGTGCGCGTCCTGCGGCGTCTCAACGGAGAAATCGTTGTGGGTC
CGTGAACACTCCTGTCCTGCCTGCGGGTTCGAGGCGGACAGGGACGCGAACGCGGCGTGGAACATTCTTTCTCGCGGCCTCGAAGATATAGGAGTGGGAT
ACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTATCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCTACCCTCAAGGAGCGAAC
GGCTGATGCCGTGAGCGAGTAGGGTAGGGCAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
405 bp134 aa175579+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEYDLDSGAHSTFSLHYHLILTTKYRCGVLTEERTQFIREVISGFTDNYGVELTNLDGKDDHVHILFRAKPTTDLVKFINTVKGATARRIRNEYADELKT
DLWGDSFWNDSYCLISTGQVSLDVLHQYIENQRE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1242 bp413 aa5811822+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYYAYKYRLKPSDAQHEELDRHRDICRQLYNHTLYRLNEYQDEHGELPSMTTLRSELPDLKTWWDGLSDVYSKVLQTVVERLFDNLKGLSKLKKNGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADISIRLHRDIPGDAKLKQVTLKKEPTGEWFATFGVQIDREPPEPPENPEKCVGIDVGILKYAY
DTDGTAVRSLDLSNERERLEREQRKLSRKQHGSNNYEKQRRRVAECYADLRRKRRDFLHKLSAYYAREYDLVAVEDLNVKGMLESPSNSRNTASAAWRTF
LSVLEYKCKREGTHCVAVNPRGTTKECASCGVSTEKSLWVREHSCPACGFEADRDANAAWNILSRGLEDIGVGYSESTPVETALPVDTPVSAKRVVEAGS
PTLKERTADAVSE

 

Blast result :
Comments
ISHje2 is 97% (TnpA : the transposase) aa similar to ISHmu6 and 96% (TnpB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Roh,S.W., Nam,Y.D., Nam,S.H., Choi,S.H., Park,H.S. and Bae,J.W. (2010) J. Bacteriol. 192 (17), 4528-4529