ISHtu6
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001861 | ND | Haloterrigena turkmenica | Haloterrigena turkmenica DSM 5511 pHTUR01 |
DNA section
IS Length : 1516 bp
Ends
Left end : CTGAATTGAGGTGCTAAGACCCCTTCCTCAGCGAGCGCCGAAGGCGCGAGCAGGGAGGGGATACAGCGCCGCACAAGTTTCTTGCACTGTTCTGTTGCAG II struct. : Yes
Right end : GACCCATTCGGTTCCTGCAAAGCGCGTCGTGGAAACAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GAGACCGCTGAT | TTAT | CGACTGCTTGCC | tcac |
DNA sequence
CTGAATTGAGGTGCTAAGACCCCTTCCTCAGCGAGCGCCGAAGGCGCGAGCAGGGAGGGGATACAGCGCCGCACAAGTTTCTTGCACTGTTCTGTTGCAG
GCCAACAGTACCGGTAGTGTTTTACGCATAGCGTGCATTGTGTGCATTACGGTGAAACGGAAGACCATAACCATTCGGGAAGACCAAGACGAGTGGATTG
AGGAGCAGCACCTCAGCCTCTCGTCGTTCGTCCAAGAGAAACTTGACGAACTCATCGAAGAACGTTCGTAGATGAACTACAATTACCGGTACAGACTCGA
TCCGTCCGACGCCCTCCAAGAGACGTTGGACCAACATCGTGATCTGTGTCGGCAAGTGTACAACCACTTCCTCCACCGCCTCAATCACAGTGACGGGGGA
ACGAAGTACGACGAGATCAACCTACTCCCGTCGATCAAGGAGTGGTGGACCGACCTCACCGACCTGTACTCTCGAACACTTCAGAACGTCGTTGAGCGGT
TGTACGACAACCTCTCACGACTCAAAGACGCGGAGGATAATGGTCGTTCGGTTGGCCTGCTCAAGTGGAAAGCACCGAACGAGTACCGATCATTCACGTA
CCGACAGTCTGGCTTCGAGCTCAAGAACACGAGCGGTCAGACTGTCCTACGGCTTTCAAAGATCGGAGAAATACCCGTTCACTTCCACCGAGAGCTACCC
GAAGACGCCACGATCAAGCAGGTGACGGTGAAAAAGGAGCCGACGGGCGAGTGGTTCGCTACGTTCGGTGTCGAAACGCCAGACGATCCGCCAAAGAAAC
CGGAGAACCCGGAGGGCGTTGTCGGCATCGACGTGGGTATCCTGAAGTACGCCCACGATACTGACGGAACAGCCGTCGAATCGGTTGACCTCTCGGACGA
ACGCAACCGACTTGAGCGCGAGCAACGGAAACTCTCACGCAAAGAGCACGGTTCGAACAACTACGAGAATCAACGCCGTCGCGTGGCCGAATGCCACGCC
GACCTGAAGCGAAAGCGCCGGGACTTCTTGCACAAGCTCTCGAACTACTACGCCCGAGAGTACGACCTCGTGGCCGTCGAAGACCTTGACGCGAAAGGTC
TGGTCGAACTCGACGGGAACTCTCGGAACCGTGCCGGAGCGGCGTGGGGGACGTTCCTCCGAATGCTCGAGTACAAGTGCGAACGCGAAGGCACGCACTT
CGTTGCTGTTAATCCGGCCGGAACGACCAAAGAGTGCGCGGCGTGCGGTGTCTCGACCGACAAACCGCTGTGGGTCCGCGAACACTCGTGTCCGTCGTGC
GGCTTCACCGCCGACCGAGACTGGAACGCGGCCTGGAACATTCTTTCTCGCGGTATCAAGCAGTTAGGAGCGGGACGCTCCGAATCAACGCCTGTGGAGA
CTGCGCTCCCTACGGGGACCCATTCGGTTCCTGCAAAGCGCGTCGTGGAAACAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTA
GGGTGGGGTAGTTCAC
GCCAACAGTACCGGTAGTGTTTTACGCATAGCGTGCATTGTGTGCATTACGGTGAAACGGAAGACCATAACCATTCGGGAAGACCAAGACGAGTGGATTG
AGGAGCAGCACCTCAGCCTCTCGTCGTTCGTCCAAGAGAAACTTGACGAACTCATCGAAGAACGTTCGTAGATGAACTACAATTACCGGTACAGACTCGA
TCCGTCCGACGCCCTCCAAGAGACGTTGGACCAACATCGTGATCTGTGTCGGCAAGTGTACAACCACTTCCTCCACCGCCTCAATCACAGTGACGGGGGA
ACGAAGTACGACGAGATCAACCTACTCCCGTCGATCAAGGAGTGGTGGACCGACCTCACCGACCTGTACTCTCGAACACTTCAGAACGTCGTTGAGCGGT
TGTACGACAACCTCTCACGACTCAAAGACGCGGAGGATAATGGTCGTTCGGTTGGCCTGCTCAAGTGGAAAGCACCGAACGAGTACCGATCATTCACGTA
CCGACAGTCTGGCTTCGAGCTCAAGAACACGAGCGGTCAGACTGTCCTACGGCTTTCAAAGATCGGAGAAATACCCGTTCACTTCCACCGAGAGCTACCC
GAAGACGCCACGATCAAGCAGGTGACGGTGAAAAAGGAGCCGACGGGCGAGTGGTTCGCTACGTTCGGTGTCGAAACGCCAGACGATCCGCCAAAGAAAC
CGGAGAACCCGGAGGGCGTTGTCGGCATCGACGTGGGTATCCTGAAGTACGCCCACGATACTGACGGAACAGCCGTCGAATCGGTTGACCTCTCGGACGA
ACGCAACCGACTTGAGCGCGAGCAACGGAAACTCTCACGCAAAGAGCACGGTTCGAACAACTACGAGAATCAACGCCGTCGCGTGGCCGAATGCCACGCC
GACCTGAAGCGAAAGCGCCGGGACTTCTTGCACAAGCTCTCGAACTACTACGCCCGAGAGTACGACCTCGTGGCCGTCGAAGACCTTGACGCGAAAGGTC
TGGTCGAACTCGACGGGAACTCTCGGAACCGTGCCGGAGCGGCGTGGGGGACGTTCCTCCGAATGCTCGAGTACAAGTGCGAACGCGAAGGCACGCACTT
CGTTGCTGTTAATCCGGCCGGAACGACCAAAGAGTGCGCGGCGTGCGGTGTCTCGACCGACAAACCGCTGTGGGTCCGCGAACACTCGTGTCCGTCGTGC
GGCTTCACCGCCGACCGAGACTGGAACGCGGCCTGGAACATTCTTTCTCGCGGTATCAAGCAGTTAGGAGCGGGACGCTCCGAATCAACGCCTGTGGAGA
CTGCGCTCCCTACGGGGACCCATTCGGTTCCTGCAAAGCGCGTCGTGGAAACAGGAAGCCCCACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTA
GGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 272 | 1501 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLDPSDALQETLDQHRDLCRQVYNHFLHRLNHSDGGTKYDEINLLPSIKEWWTDLTDLYSRTLQNVVERLYDNLSRLKDAEDNGRSVGLLKWK
APNEYRSFTYRQSGFELKNTSGQTVLRLSKIGEIPVHFHRELPEDATIKQVTVKKEPTGEWFATFGVETPDDPPKKPENPEGVVGIDVGILKYAHDTDGT
AVESVDLSDERNRLEREQRKLSRKEHGSNNYENQRRRVAECHADLKRKRRDFLHKLSNYYAREYDLVAVEDLDAKGLVELDGNSRNRAGAAWGTFLRMLE
YKCEREGTHFVAVNPAGTTKECAACGVSTDKPLWVREHSCPSCGFTADRDWNAAWNILSRGIKQLGAGRSESTPVETALPTGTHSVPAKRVVETGSPTLK
ERTASAVSE
APNEYRSFTYRQSGFELKNTSGQTVLRLSKIGEIPVHFHRELPEDATIKQVTVKKEPTGEWFATFGVETPDDPPKKPENPEGVVGIDVGILKYAHDTDGT
AVESVDLSDERNRLEREQRKLSRKEHGSNNYENQRRRVAECHADLKRKRRDFLHKLSNYYAREYDLVAVEDLDAKGLVELDGNSRNRAGAAWGTFLRMLE
YKCEREGTHFVAVNPAGTTKECAACGVSTDKPLWVREHSCPSCGFTADRDWNAAWNILSRGIKQLGAGRSESTPVETALPTGTHSVPAKRVVETGSPTLK
ERTASAVSE
Blast result :
Comments
ISHtu6 is 91% (TnpB) aa similar to ISNaoc3.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank