ISHru2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003050 | ND | Halovivax ruber | Halovivax ruber XH-70 |
DNA section
IS Length : 1942 bp
Ends
Left end : GTGACTCAAGGCGCTAAGTCCCTTCCTCAACGAATTCCGAAGGCGCGAGTCGGGAGGGGACACAGCGTCCCCAGAAATCGGTGATTTCTGGTGTGCGAAC II struct. : No
Right end : CCGAAGCGCCCGTTCGCATGGTCAGCGGGACCGAAGGTCCCGCGCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CACGGATAAGTG | TTTA | TGACTCGACCGT |
DNA sequence
GTGACTCAAGGCGCTAAGTCCCTTCCTCAACGAATTCCGAAGGCGCGAGTCGGGAGGGGACACAGCGTCCCCAGAAATCGGTGATTTCTGGTGTGCGAAC
GAGACGCTTTGCGTCTCGTCAACGCCGTACAGCTCTCAAACGTGTTCGGTAGCCGTCCCACAGGCCCACGTAATCGCTATCTTTTTTCGTTAGGGTGTCG
TACTAACTACCGAACCCAATGCAGTACGACCTCGACTCAGGTTCGCATTCGGTCTACTCGCTCCACTATCACCTGATACTCACGACGAAGTATCGGCGAG
GGGTGCTAACCGAAGAACGAACCAACTTCATTCGAGGTATCATCGAAGGGTTCGCGGACAACTACGGCGTCGAACTCGTCAATCTCGACGGTGAGGACGA
CCATATACACGTCCAGTTCCGAGCGAAGCCGACCACAGACCTCGTGAAGTTCATCAACACCGTGAAGGGTGCGACCGCTCGTCGTATCCGCAACGAGTAC
GAGGACGAACTGAAGACCGAACTGTGGGGCGACTCGTTCTGGAACAGTTCCTACTGCCTCCTTTCGACGGGGCAGGTGTCGCTCGACGTTCTGAAACAAT
ACGTCGAAGAACAACGAGAGTCCTGATGTACTACTCCTACAAGTATCGACTCAAGCCGTCCAACGCCCACCGTGAGGAGTTGGACCGCCACCGCGATATT
TGTAGGCAACTGTACAACCACACACGCTACCGCCTCAACGAGTACCAAGACGAACACGGTGAACTGCCGTCAATGACCACGCTACGGTCTGAGTTACCCG
ACCTCAAGAAGTGGTGGAACGACCTCTCTGACGTGTACTCGAAAGTCCTTCAGACCGTCGTAGAACGGTTGTTCGACAATCTCAAAGGCCTCTCCAAACT
CAAGGAGAACGGCTACGGCGTCGGTCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAGCCAGTCCGGCTTCAAGCTCGACAAGAAG
GGCGGTCAGACTGTCCTGTCACTCTCGAAACTTGCGGACATACCGATCCAGCTCCACCGAGAGATTCCAGACGATGCCGCATTCAAGCAGGTCACGCTCA
AAAAGGAACCGACGGGCGAGTGGTTCGCCACGTTCGGCGTCCAAATGGACCGTGAATCTCCTGAGCCGCCTGAGAATCCCGAGAAGTGCGTTGGGATTGA
CGTGGGGATTCTCACGTACGCCCACGATACCGACGGCACGGCGGTCGGGTCGCTCGACCTCTCTGACGAACGAGAGCGACTGGAGCGCGAGCAACGGAAG
CTCTCCCGGAAGGAACACGGGTCGAACAACTACGAGAAACAACGGCGTCGAATCGCGGAGTGTCACGCCGACCTCCGACGAAAACGCCGCGACTTCTTGC
ACAAACTCTCGAAGTACTACGCTCGGGAGTACGACCTCGTGGCGGTCGAAGACCTGAACGTGAAGGGCATGATGGAGTCGCCGTCGAACAGCCGCAACAC
CGCGTCCGCGGCATGGCGAACGTTCCTCTCGTTGCTCGAATACAAGTGCGAGCGCGAGGGGACGCACTTCGTGGCGGTCAACCCGAGAGGGACGACCAAG
GAGTGCGCGTCGTGCGGCGTCGAGACAAAGAAGCCGTTGTGGGTCCGTGAACACTCCTGTCCTGCCTGCGGATTTGAAGCGGACAGGGACGCGAACGCGG
CATGGAACATCCTTTCTCGCGGCCTCGAAGATGTAGGAGTGGGATACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTATCTGC
AAAGCGCGTCGTGGAAGCAGGAAGCCCTATCTGGTCACGGGCCCGAAGCGCCCGTTCGCATGGTCAGCGGGACCGAAGGTCCCGCGCTACCCTCAAGGAG
CGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC
GAGACGCTTTGCGTCTCGTCAACGCCGTACAGCTCTCAAACGTGTTCGGTAGCCGTCCCACAGGCCCACGTAATCGCTATCTTTTTTCGTTAGGGTGTCG
TACTAACTACCGAACCCAATGCAGTACGACCTCGACTCAGGTTCGCATTCGGTCTACTCGCTCCACTATCACCTGATACTCACGACGAAGTATCGGCGAG
GGGTGCTAACCGAAGAACGAACCAACTTCATTCGAGGTATCATCGAAGGGTTCGCGGACAACTACGGCGTCGAACTCGTCAATCTCGACGGTGAGGACGA
CCATATACACGTCCAGTTCCGAGCGAAGCCGACCACAGACCTCGTGAAGTTCATCAACACCGTGAAGGGTGCGACCGCTCGTCGTATCCGCAACGAGTAC
GAGGACGAACTGAAGACCGAACTGTGGGGCGACTCGTTCTGGAACAGTTCCTACTGCCTCCTTTCGACGGGGCAGGTGTCGCTCGACGTTCTGAAACAAT
ACGTCGAAGAACAACGAGAGTCCTGATGTACTACTCCTACAAGTATCGACTCAAGCCGTCCAACGCCCACCGTGAGGAGTTGGACCGCCACCGCGATATT
TGTAGGCAACTGTACAACCACACACGCTACCGCCTCAACGAGTACCAAGACGAACACGGTGAACTGCCGTCAATGACCACGCTACGGTCTGAGTTACCCG
ACCTCAAGAAGTGGTGGAACGACCTCTCTGACGTGTACTCGAAAGTCCTTCAGACCGTCGTAGAACGGTTGTTCGACAATCTCAAAGGCCTCTCCAAACT
CAAGGAGAACGGCTACGGCGTCGGTCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAGCCAGTCCGGCTTCAAGCTCGACAAGAAG
GGCGGTCAGACTGTCCTGTCACTCTCGAAACTTGCGGACATACCGATCCAGCTCCACCGAGAGATTCCAGACGATGCCGCATTCAAGCAGGTCACGCTCA
AAAAGGAACCGACGGGCGAGTGGTTCGCCACGTTCGGCGTCCAAATGGACCGTGAATCTCCTGAGCCGCCTGAGAATCCCGAGAAGTGCGTTGGGATTGA
CGTGGGGATTCTCACGTACGCCCACGATACCGACGGCACGGCGGTCGGGTCGCTCGACCTCTCTGACGAACGAGAGCGACTGGAGCGCGAGCAACGGAAG
CTCTCCCGGAAGGAACACGGGTCGAACAACTACGAGAAACAACGGCGTCGAATCGCGGAGTGTCACGCCGACCTCCGACGAAAACGCCGCGACTTCTTGC
ACAAACTCTCGAAGTACTACGCTCGGGAGTACGACCTCGTGGCGGTCGAAGACCTGAACGTGAAGGGCATGATGGAGTCGCCGTCGAACAGCCGCAACAC
CGCGTCCGCGGCATGGCGAACGTTCCTCTCGTTGCTCGAATACAAGTGCGAGCGCGAGGGGACGCACTTCGTGGCGGTCAACCCGAGAGGGACGACCAAG
GAGTGCGCGTCGTGCGGCGTCGAGACAAAGAAGCCGTTGTGGGTCCGTGAACACTCCTGTCCTGCCTGCGGATTTGAAGCGGACAGGGACGCGAACGCGG
CATGGAACATCCTTTCTCGCGGCCTCGAAGATGTAGGAGTGGGATACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTATCTGC
AAAGCGCGTCGTGGAAGCAGGAAGCCCTATCTGGTCACGGGCCCGAAGCGCCCGTTCGCATGGTCAGCGGGACCGAAGGTCCCGCGCTACCCTCAAGGAG
CGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
408 bp | 135 aa | 219 | 626 | + | No |
Chemistry : Y1
ORF sequence :
MQYDLDSGSHSVYSLHYHLILTTKYRRGVLTEERTNFIRGIIEGFADNYGVELVNLDGEDDHIHVQFRAKPTTDLVKFINTVKGATARRIRNEYEDELKT
ELWGDSFWNSSYCLLSTGQVSLDVLKQYVEEQRES
ELWGDSFWNSSYCLLSTGQVSLDVLKQYVEEQRES
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 626 | 1927 | + | No |
AG : TnpB
ORF sequence :
MYYSYKYRLKPSNAHREELDRHRDICRQLYNHTRYRLNEYQDEHGELPSMTTLRSELPDLKKWWNDLSDVYSKVLQTVVERLFDNLKGLSKLKENGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIQLHREIPDDAAFKQVTLKKEPTGEWFATFGVQMDRESPEPPENPEKCVGIDVGILTYAH
DTDGTAVGSLDLSDERERLEREQRKLSRKEHGSNNYEKQRRRIAECHADLRRKRRDFLHKLSKYYAREYDLVAVEDLNVKGMMESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKECASCGVETKKPLWVREHSCPACGFEADRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTPVSAKRVVEAGS
PIWSRARSARSHGQRDRRSRATLKERTASAVSE
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIQLHREIPDDAAFKQVTLKKEPTGEWFATFGVQMDRESPEPPENPEKCVGIDVGILTYAH
DTDGTAVGSLDLSDERERLEREQRKLSRKEHGSNNYEKQRRRIAECHADLRRKRRDFLHKLSKYYAREYDLVAVEDLNVKGMMESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKECASCGVETKKPLWVREHSCPACGFEADRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTPVSAKRVVEAGS
PIWSRARSARSHGQRDRRSRATLKERTASAVSE
Blast result :
Comments
ISHru2 is 93% (TnpA : the transposase) aa similar to ISHli11 and 92% (TnpB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Davenport,K., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Davenport,K., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2011) Direct submission GenBank.