ISHru2

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003050 ND Halovivax ruber
Halovivax ruber XH-70
DNA section
IS Length : 1942 bp

Ends


Left end : GTGACTCAAGGCGCTAAGTCCCTTCCTCAACGAATTCCGAAGGCGCGAGTCGGGAGGGGACACAGCGTCCCCAGAAATCGGTGATTTCTGGTGTGCGAAC II struct. : No
Right end : CCGAAGCGCCCGTTCGCATGGTCAGCGGGACCGAAGGTCCCGCGCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CACGGATAAGTGTTTATGACTCGACCGT

DNA sequence

GTGACTCAAGGCGCTAAGTCCCTTCCTCAACGAATTCCGAAGGCGCGAGTCGGGAGGGGACACAGCGTCCCCAGAAATCGGTGATTTCTGGTGTGCGAAC
GAGACGCTTTGCGTCTCGTCAACGCCGTACAGCTCTCAAACGTGTTCGGTAGCCGTCCCACAGGCCCACGTAATCGCTATCTTTTTTCGTTAGGGTGTCG
TACTAACTACCGAACCCAATGCAGTACGACCTCGACTCAGGTTCGCATTCGGTCTACTCGCTCCACTATCACCTGATACTCACGACGAAGTATCGGCGAG
GGGTGCTAACCGAAGAACGAACCAACTTCATTCGAGGTATCATCGAAGGGTTCGCGGACAACTACGGCGTCGAACTCGTCAATCTCGACGGTGAGGACGA
CCATATACACGTCCAGTTCCGAGCGAAGCCGACCACAGACCTCGTGAAGTTCATCAACACCGTGAAGGGTGCGACCGCTCGTCGTATCCGCAACGAGTAC
GAGGACGAACTGAAGACCGAACTGTGGGGCGACTCGTTCTGGAACAGTTCCTACTGCCTCCTTTCGACGGGGCAGGTGTCGCTCGACGTTCTGAAACAAT
ACGTCGAAGAACAACGAGAGTCCTGATGTACTACTCCTACAAGTATCGACTCAAGCCGTCCAACGCCCACCGTGAGGAGTTGGACCGCCACCGCGATATT
TGTAGGCAACTGTACAACCACACACGCTACCGCCTCAACGAGTACCAAGACGAACACGGTGAACTGCCGTCAATGACCACGCTACGGTCTGAGTTACCCG
ACCTCAAGAAGTGGTGGAACGACCTCTCTGACGTGTACTCGAAAGTCCTTCAGACCGTCGTAGAACGGTTGTTCGACAATCTCAAAGGCCTCTCCAAACT
CAAGGAGAACGGCTACGGCGTCGGTCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAGCCAGTCCGGCTTCAAGCTCGACAAGAAG
GGCGGTCAGACTGTCCTGTCACTCTCGAAACTTGCGGACATACCGATCCAGCTCCACCGAGAGATTCCAGACGATGCCGCATTCAAGCAGGTCACGCTCA
AAAAGGAACCGACGGGCGAGTGGTTCGCCACGTTCGGCGTCCAAATGGACCGTGAATCTCCTGAGCCGCCTGAGAATCCCGAGAAGTGCGTTGGGATTGA
CGTGGGGATTCTCACGTACGCCCACGATACCGACGGCACGGCGGTCGGGTCGCTCGACCTCTCTGACGAACGAGAGCGACTGGAGCGCGAGCAACGGAAG
CTCTCCCGGAAGGAACACGGGTCGAACAACTACGAGAAACAACGGCGTCGAATCGCGGAGTGTCACGCCGACCTCCGACGAAAACGCCGCGACTTCTTGC
ACAAACTCTCGAAGTACTACGCTCGGGAGTACGACCTCGTGGCGGTCGAAGACCTGAACGTGAAGGGCATGATGGAGTCGCCGTCGAACAGCCGCAACAC
CGCGTCCGCGGCATGGCGAACGTTCCTCTCGTTGCTCGAATACAAGTGCGAGCGCGAGGGGACGCACTTCGTGGCGGTCAACCCGAGAGGGACGACCAAG
GAGTGCGCGTCGTGCGGCGTCGAGACAAAGAAGCCGTTGTGGGTCCGTGAACACTCCTGTCCTGCCTGCGGATTTGAAGCGGACAGGGACGCGAACGCGG
CATGGAACATCCTTTCTCGCGGCCTCGAAGATGTAGGAGTGGGATACTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACCTGTATCTGC
AAAGCGCGTCGTGGAAGCAGGAAGCCCTATCTGGTCACGGGCCCGAAGCGCCCGTTCGCATGGTCAGCGGGACCGAAGGTCCCGCGCTACCCTCAAGGAG
CGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
408 bp135 aa219626+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MQYDLDSGSHSVYSLHYHLILTTKYRRGVLTEERTNFIRGIIEGFADNYGVELVNLDGEDDHIHVQFRAKPTTDLVKFINTVKGATARRIRNEYEDELKT
ELWGDSFWNSSYCLLSTGQVSLDVLKQYVEEQRES

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1302 bp433 aa6261927+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYYSYKYRLKPSNAHREELDRHRDICRQLYNHTRYRLNEYQDEHGELPSMTTLRSELPDLKKWWNDLSDVYSKVLQTVVERLFDNLKGLSKLKENGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIQLHREIPDDAAFKQVTLKKEPTGEWFATFGVQMDRESPEPPENPEKCVGIDVGILTYAH
DTDGTAVGSLDLSDERERLEREQRKLSRKEHGSNNYEKQRRRIAECHADLRRKRRDFLHKLSKYYAREYDLVAVEDLNVKGMMESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKECASCGVETKKPLWVREHSCPACGFEADRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTPVSAKRVVEAGS
PIWSRARSARSHGQRDRRSRATLKERTASAVSE

 

Blast result :
Comments
ISHru2 is 93% (TnpA : the transposase) aa similar to ISHli11 and 92% (TnpB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Davenport,K., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2011) Direct submission GenBank.