ISNaoc2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003929 | ND | Natronococcus occultus | Natronococcus occultus SP4 |
DNA section
IS Length : 1458 bp
Ends
Left end : ACGCTGAACAGGCGCAATACCACGGCCTTCAGGCCGTGGATACGCGCCGTCACTTAGTGACACATTCCACCGGCACCGACAGGGCCGGATATTCCACGTC II struct. : Yes
Right end : CGCGAGAGCGGACGGTTCACACCGAGAGAACAGGGAGTCTGCAAACCCTAATATCCCAACGCTTGGGATTCCTCCGCCTTCAGGCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAACTAATAGAG | TTAT | GCTGTGTTGCGT | tcaa |
DNA sequence
ACGCTGAACAGGCGCAATACCACGGCCTTCAGGCCGTGGATACGCGCCGTCACTTAGTGACACATTCCACCGGCACCGACAGGGCCGGATATTCCACGTC
AAACACAGTCTTTAATATACTCTACTTCATAACTGGTTATGAACACAGTACGATGCTGGAGACAACCCGCACCTACGTCGCACGCATCACGAACCACAGT
CAGGTTCGTGGCGATCTCGACGAGTGTGGGTTCTCTGCATCCAAACTGTGGAACGTCGGACGCTACTACATCCAAGAACGGTGGGACGAAGACGGGGAGA
TACCCGACGAAGCCGAACTGAAATCGGAGTTGAAAGACCACGAACGCTACAGTGACATGCATTCGCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGA
GGCGTTCACCGGCTGGTACAATTCCGACGACGGCAACAACCCACCGGGATACCGGAAACGTGGCGACGACCACCCGCGCTCCACCGTGACGTGGAAGAAA
CGAGCCATCAAGCACGATACGAAACACGGCCAGCTCCGCCTCTCGAAAGGGTTCAACCTGAAAGAGTCGCGGTCTGACTTCATCCTCGCGGAGTACGAAA
CCCGTCCCGACGTAGAAGTCGAGAACATCCAGCAAGTGCGTGCCGTCTACAACGGCGACGAGTGGGAACTCCACCTCGTCTGTAAAAAAGAGATTCCTGT
TGAAGACGCACCGGGTGACAACACGGCAGGGATCGACCTCGGGATCAATAACTATCTCGCCATCGACTACCAGGACGGCGGGAGTGAACTGTATCCGGGG
AACACGCTGAAAGAGGACAAGCACTACTTCACCCGCGAGGAGTACCAGACCGAAGGCGAGAACGGGCCGTCGAAGCGTGCGCGGAAGGCTCGGCGGAAGC
TCTCCCGACGCAAGGATCATTTCCTCCACACGCTCTCGAAACACATCGTTGACCGGTGTGTCGAAGATGGTGCGGAGAAGATCGCGGTTGGCGACCTCAG
CGACATCCGTGAAGAGGAGAATGGCGACTCGCGGAACTGGGGCGCGTCGGGGAACAAGAAACTCCACGGATGGGAATTTGACCGCTTCGCCCGTCTCCTC
GAATACAAGGCCGAGGAACACGGCATCCTCGTTGACCGCGTAGACGAGGAGAACACCTCAAAGACGTGTTCGTGTTGCGGGCAGATTCGAGACAGCAACC
GAGTGGAGCGCGGTCTGTACGTCTGTGAGTCGTGCGAGACGGCGATGAACGCAGACGTGAACGGTGCGGTAAACATCAGGAGAAAGATAACTCAGAGTCC
CCCGACAGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGACGGTTCACACCGAGAGAACAGGGAGTCTGC
AAACCCTAATATCCCAACGCTTGGGATTCCTCCGCCTTCAGGCGGAGGAGGATGTCAA
AAACACAGTCTTTAATATACTCTACTTCATAACTGGTTATGAACACAGTACGATGCTGGAGACAACCCGCACCTACGTCGCACGCATCACGAACCACAGT
CAGGTTCGTGGCGATCTCGACGAGTGTGGGTTCTCTGCATCCAAACTGTGGAACGTCGGACGCTACTACATCCAAGAACGGTGGGACGAAGACGGGGAGA
TACCCGACGAAGCCGAACTGAAATCGGAGTTGAAAGACCACGAACGCTACAGTGACATGCATTCGCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGA
GGCGTTCACCGGCTGGTACAATTCCGACGACGGCAACAACCCACCGGGATACCGGAAACGTGGCGACGACCACCCGCGCTCCACCGTGACGTGGAAGAAA
CGAGCCATCAAGCACGATACGAAACACGGCCAGCTCCGCCTCTCGAAAGGGTTCAACCTGAAAGAGTCGCGGTCTGACTTCATCCTCGCGGAGTACGAAA
CCCGTCCCGACGTAGAAGTCGAGAACATCCAGCAAGTGCGTGCCGTCTACAACGGCGACGAGTGGGAACTCCACCTCGTCTGTAAAAAAGAGATTCCTGT
TGAAGACGCACCGGGTGACAACACGGCAGGGATCGACCTCGGGATCAATAACTATCTCGCCATCGACTACCAGGACGGCGGGAGTGAACTGTATCCGGGG
AACACGCTGAAAGAGGACAAGCACTACTTCACCCGCGAGGAGTACCAGACCGAAGGCGAGAACGGGCCGTCGAAGCGTGCGCGGAAGGCTCGGCGGAAGC
TCTCCCGACGCAAGGATCATTTCCTCCACACGCTCTCGAAACACATCGTTGACCGGTGTGTCGAAGATGGTGCGGAGAAGATCGCGGTTGGCGACCTCAG
CGACATCCGTGAAGAGGAGAATGGCGACTCGCGGAACTGGGGCGCGTCGGGGAACAAGAAACTCCACGGATGGGAATTTGACCGCTTCGCCCGTCTCCTC
GAATACAAGGCCGAGGAACACGGCATCCTCGTTGACCGCGTAGACGAGGAGAACACCTCAAAGACGTGTTCGTGTTGCGGGCAGATTCGAGACAGCAACC
GAGTGGAGCGCGGTCTGTACGTCTGTGAGTCGTGCGAGACGGCGATGAACGCAGACGTGAACGGTGCGGTAAACATCAGGAGAAAGATAACTCAGAGTCC
CCCGACAGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGACGGTTCACACCGAGAGAACAGGGAGTCTGC
AAACCCTAATATCCCAACGCTTGGGATTCCTCCGCCTTCAGGCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 153 | 1409 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYVARITNHSQVRGDLDECGFSASKLWNVGRYYIQERWDEDGEIPDEAELKSELKDHERYSDMHSQSSQRVLEELAEAFTGWYNSDDGNNPPGY
RKRGDDHPRSTVTWKKRAIKHDTKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVENIQQVRAVYNGDEWELHLVCKKEIPVEDAPGDNTAGIDLGINN
YLAIDYQDGGSELYPGNTLKEDKHYFTREEYQTEGENGPSKRARKARRKLSRRKDHFLHTLSKHIVDRCVEDGAEKIAVGDLSDIREEENGDSRNWGASG
NKKLHGWEFDRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGQIRDSNRVERGLYVCESCETAMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGRFTPREQGVCKP
RKRGDDHPRSTVTWKKRAIKHDTKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVENIQQVRAVYNGDEWELHLVCKKEIPVEDAPGDNTAGIDLGINN
YLAIDYQDGGSELYPGNTLKEDKHYFTREEYQTEGENGPSKRARKARRKLSRRKDHFLHTLSKHIVDRCVEDGAEKIAVGDLSDIREEENGDSRNWGASG
NKKLHGWEFDRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGQIRDSNRVERGLYVCESCETAMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGRFTPREQGVCKP
Blast result :
Comments
ISNaoc2 is 96% (TnpB) aa similar to ISHbo6.
References
1] Pfeiffer, F. (2015) Direct submission
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.