ISNaoc2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003929 ND Natronococcus occultus
Natronococcus occultus SP4
DNA section
IS Length : 1458 bp

Ends


Left end : ACGCTGAACAGGCGCAATACCACGGCCTTCAGGCCGTGGATACGCGCCGTCACTTAGTGACACATTCCACCGGCACCGACAGGGCCGGATATTCCACGTC II struct. : Yes
Right end : CGCGAGAGCGGACGGTTCACACCGAGAGAACAGGGAGTCTGCAAACCCTAATATCCCAACGCTTGGGATTCCTCCGCCTTCAGGCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAACTAATAGAGTTATGCTGTGTTGCGTtcaa

DNA sequence

ACGCTGAACAGGCGCAATACCACGGCCTTCAGGCCGTGGATACGCGCCGTCACTTAGTGACACATTCCACCGGCACCGACAGGGCCGGATATTCCACGTC
AAACACAGTCTTTAATATACTCTACTTCATAACTGGTTATGAACACAGTACGATGCTGGAGACAACCCGCACCTACGTCGCACGCATCACGAACCACAGT
CAGGTTCGTGGCGATCTCGACGAGTGTGGGTTCTCTGCATCCAAACTGTGGAACGTCGGACGCTACTACATCCAAGAACGGTGGGACGAAGACGGGGAGA
TACCCGACGAAGCCGAACTGAAATCGGAGTTGAAAGACCACGAACGCTACAGTGACATGCATTCGCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGA
GGCGTTCACCGGCTGGTACAATTCCGACGACGGCAACAACCCACCGGGATACCGGAAACGTGGCGACGACCACCCGCGCTCCACCGTGACGTGGAAGAAA
CGAGCCATCAAGCACGATACGAAACACGGCCAGCTCCGCCTCTCGAAAGGGTTCAACCTGAAAGAGTCGCGGTCTGACTTCATCCTCGCGGAGTACGAAA
CCCGTCCCGACGTAGAAGTCGAGAACATCCAGCAAGTGCGTGCCGTCTACAACGGCGACGAGTGGGAACTCCACCTCGTCTGTAAAAAAGAGATTCCTGT
TGAAGACGCACCGGGTGACAACACGGCAGGGATCGACCTCGGGATCAATAACTATCTCGCCATCGACTACCAGGACGGCGGGAGTGAACTGTATCCGGGG
AACACGCTGAAAGAGGACAAGCACTACTTCACCCGCGAGGAGTACCAGACCGAAGGCGAGAACGGGCCGTCGAAGCGTGCGCGGAAGGCTCGGCGGAAGC
TCTCCCGACGCAAGGATCATTTCCTCCACACGCTCTCGAAACACATCGTTGACCGGTGTGTCGAAGATGGTGCGGAGAAGATCGCGGTTGGCGACCTCAG
CGACATCCGTGAAGAGGAGAATGGCGACTCGCGGAACTGGGGCGCGTCGGGGAACAAGAAACTCCACGGATGGGAATTTGACCGCTTCGCCCGTCTCCTC
GAATACAAGGCCGAGGAACACGGCATCCTCGTTGACCGCGTAGACGAGGAGAACACCTCAAAGACGTGTTCGTGTTGCGGGCAGATTCGAGACAGCAACC
GAGTGGAGCGCGGTCTGTACGTCTGTGAGTCGTGCGAGACGGCGATGAACGCAGACGTGAACGGTGCGGTAAACATCAGGAGAAAGATAACTCAGAGTCC
CCCGACAGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGACGGTTCACACCGAGAGAACAGGGAGTCTGC
AAACCCTAATATCCCAACGCTTGGGATTCCTCCGCCTTCAGGCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1531409+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLETTRTYVARITNHSQVRGDLDECGFSASKLWNVGRYYIQERWDEDGEIPDEAELKSELKDHERYSDMHSQSSQRVLEELAEAFTGWYNSDDGNNPPGY
RKRGDDHPRSTVTWKKRAIKHDTKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVENIQQVRAVYNGDEWELHLVCKKEIPVEDAPGDNTAGIDLGINN
YLAIDYQDGGSELYPGNTLKEDKHYFTREEYQTEGENGPSKRARKARRKLSRRKDHFLHTLSKHIVDRCVEDGAEKIAVGDLSDIREEENGDSRNWGASG
NKKLHGWEFDRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGQIRDSNRVERGLYVCESCETAMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGRFTPREQGVCKP

 

Blast result :
Comments
ISNaoc2 is 96% (TnpB) aa similar to ISHbo6.
References
1] Pfeiffer, F. (2015) Direct submission
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.