ISHarch10
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1430 bp
Ends
Left end : CGGTTGCGGTGAGGGTGCCAAGCCCCCGTCCTCAAGGGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACGGCACCCGCACGAATCTCAAACACGACAA II struct. : Yes
Right end : TGTGGATACGCAGAATGTATCTGCAAGTCGCGTTGTGGAAACAGGAAGCCCCTGCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGCAGGAGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTGGCCGCCGAG | TTAG | GGCACTGGCAGT | tcac |
TCTCGCTGGGAT | TTAG | GGTCGCTTGATG | tcac |
CATCGGCAGCTT | TTAG | CGGTGTTTTTCC | tcac |
DNA sequence
CGGTTGCGGTGAGGGTGCCAAGCCCCCGTCCTCAAGGGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACGGCACCCGCACGAATCTCAAACACGACAA
ACCAGAATCTTTACCATGGAATATGTCGTAATTATAGACACATCGTATGATGTACAGCCCTCGCTTCCGCTTGCTTCCCACGACAGTGCAACGCGAAGCG
ATGGACTGGACACGAAACACCGTACGACAAGTGTACAACCACGGTCTCCACGAATTCAACAACATCCCCGACGACACAGGCACGCTCCGTCAACGCGTCT
GGAGCGTCCGCGACACGCTCCCTGCGATGAAAGATTGGTGGTCCGACCTGAAACACGTTTACTCCACGGTTCTCCAGAAAGCCATCGAGCGAATCCGAGA
CAACATCCAGAACCTCGGGAAACTCAAAGCCAAAGGATACGACGTAGGGTCATTGAACTGGAAGAAACCACGAGAATACCGGAGTTTCACGTACCGACAA
TCAGGCTTCGAACTCGACAAGAAGAGTGGCCCAGACGGACGTGGACTCCTCGTCCTCAAGAAACTCAAAGGCGAAACCCGCGAAATCCCAATTCGCCTCC
ATCGAGACCTTCCAGACCACGAGCAAATCAAAGAAGTCACGCTCAAGAAAGAGCCCACCGGCGCGTGGTACGTCTCATTCTGCATCAAAACAGACGAACC
CGAGAAACCAGATGTAGAGGACATTACCCCTGATGACACCGTGGGTCTTGACCTCGGTGTGTTGAACTTCGTTCACGACTCGAATGGTTGCTCTGTTGGA
CGACTTGACTTATCCAAAGACCGCGAGCGTCTTGAACGCGAGCAACGCTCGCTCTCGCGCAAACAAGAAGGCTCGAACAATTGGGAGAAACAACGCCGTC
GAGTCGCCACGGTTCACGCTCGGATGACCGCGAAGAAGCAGGACTTCAAGCACAAACTCGCGCACTTCTACACGACCCAGTACGACGCCGTGTTCGCCGA
AGACCTAAACGTTCGTGGGATGCTTGAAAGCCCGGGGAACGCGCGGAATAAGGCTGAAGTCGGGTGGCGTGACTTCATCACTATCCTCGAACATCACGGT
GACAAGAACGCGTGTCACGTTCAGGAAATTAACCCACGTGGGACGACCAAAGAGTGTTCGTCGTGTGGTGTGGAGACACGCAAGCCAGTATGGGTACGCG
AGCATTCGTGTCCGTCATGTGGGTTCGAACTCGACCGGGATTGGAACGCGTCGTTGAACGTGCTGGCGCGAGGATTGCCAAAACTAGGAGTGGTTCACTC
CGAAGAGACGCCTGTGAAGACTGTGACCGCTGTGGATACGCAGAATGTATCTGCAAGTCGCGTTGTGGAAACAGGAAGCCCCTGCCTCAAGGAAGCCGCG
TCAGCGGCTGAGTAGGCAGGAGTAGTTCAC
ACCAGAATCTTTACCATGGAATATGTCGTAATTATAGACACATCGTATGATGTACAGCCCTCGCTTCCGCTTGCTTCCCACGACAGTGCAACGCGAAGCG
ATGGACTGGACACGAAACACCGTACGACAAGTGTACAACCACGGTCTCCACGAATTCAACAACATCCCCGACGACACAGGCACGCTCCGTCAACGCGTCT
GGAGCGTCCGCGACACGCTCCCTGCGATGAAAGATTGGTGGTCCGACCTGAAACACGTTTACTCCACGGTTCTCCAGAAAGCCATCGAGCGAATCCGAGA
CAACATCCAGAACCTCGGGAAACTCAAAGCCAAAGGATACGACGTAGGGTCATTGAACTGGAAGAAACCACGAGAATACCGGAGTTTCACGTACCGACAA
TCAGGCTTCGAACTCGACAAGAAGAGTGGCCCAGACGGACGTGGACTCCTCGTCCTCAAGAAACTCAAAGGCGAAACCCGCGAAATCCCAATTCGCCTCC
ATCGAGACCTTCCAGACCACGAGCAAATCAAAGAAGTCACGCTCAAGAAAGAGCCCACCGGCGCGTGGTACGTCTCATTCTGCATCAAAACAGACGAACC
CGAGAAACCAGATGTAGAGGACATTACCCCTGATGACACCGTGGGTCTTGACCTCGGTGTGTTGAACTTCGTTCACGACTCGAATGGTTGCTCTGTTGGA
CGACTTGACTTATCCAAAGACCGCGAGCGTCTTGAACGCGAGCAACGCTCGCTCTCGCGCAAACAAGAAGGCTCGAACAATTGGGAGAAACAACGCCGTC
GAGTCGCCACGGTTCACGCTCGGATGACCGCGAAGAAGCAGGACTTCAAGCACAAACTCGCGCACTTCTACACGACCCAGTACGACGCCGTGTTCGCCGA
AGACCTAAACGTTCGTGGGATGCTTGAAAGCCCGGGGAACGCGCGGAATAAGGCTGAAGTCGGGTGGCGTGACTTCATCACTATCCTCGAACATCACGGT
GACAAGAACGCGTGTCACGTTCAGGAAATTAACCCACGTGGGACGACCAAAGAGTGTTCGTCGTGTGGTGTGGAGACACGCAAGCCAGTATGGGTACGCG
AGCATTCGTGTCCGTCATGTGGGTTCGAACTCGACCGGGATTGGAACGCGTCGTTGAACGTGCTGGCGCGAGGATTGCCAAAACTAGGAGTGGTTCACTC
CGAAGAGACGCCTGTGAAGACTGTGACCGCTGTGGATACGCAGAATGTATCTGCAAGTCGCGTTGTGGAAACAGGAAGCCCCTGCCTCAAGGAAGCCGCG
TCAGCGGCTGAGTAGGCAGGAGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 147 | 1415 | + | No |
AG : TnpB
ORF sequence :
MMYSPRFRLLPTTVQREAMDWTRNTVRQVYNHGLHEFNNIPDDTGTLRQRVWSVRDTLPAMKDWWSDLKHVYSTVLQKAIERIRDNIQNLGKLKAKGYDV
GSLNWKKPREYRSFTYRQSGFELDKKSGPDGRGLLVLKKLKGETREIPIRLHRDLPDHEQIKEVTLKKEPTGAWYVSFCIKTDEPEKPDVEDITPDDTVG
LDLGVLNFVHDSNGCSVGRLDLSKDRERLEREQRSLSRKQEGSNNWEKQRRRVATVHARMTAKKQDFKHKLAHFYTTQYDAVFAEDLNVRGMLESPGNAR
NKAEVGWRDFITILEHHGDKNACHVQEINPRGTTKECSSCGVETRKPVWVREHSCPSCGFELDRDWNASLNVLARGLPKLGVVHSEETPVKTVTAVDTQN
VSASRVVETGSPCLKEAASAAE
GSLNWKKPREYRSFTYRQSGFELDKKSGPDGRGLLVLKKLKGETREIPIRLHRDLPDHEQIKEVTLKKEPTGAWYVSFCIKTDEPEKPDVEDITPDDTVG
LDLGVLNFVHDSNGCSVGRLDLSKDRERLEREQRSLSRKQEGSNNWEKQRRRVATVHARMTAKKQDFKHKLAHFYTTQYDAVFAEDLNVRGMLESPGNAR
NKAEVGWRDFITILEHHGDKNACHVQEINPRGTTKECSSCGVETRKPVWVREHSCPSCGFELDRDWNASLNVLARGLPKLGVVHSEETPVKTVTAVDTQN
VSASRVVETGSPCLKEAASAAE
Blast result :
Comments
ISHarch10 is 86% (TnpB) aa similar to ISNph14.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank