ISHarch9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1429 bp
Ends
Left end : CGGTTGCGGTGAGGGTGCCAAGCCCCCGTCCTCAAGACGAGGCGAAGTCGAGCGAGTAGGGCGGGGATACGGCACCCGCACGAGTCTCAAACACGACAAA II struct. : Yes
Right end : TGTGGATACGCAGAATGTATCTGCAAGTCACGTCGTGGAAACAGGAAGCCCCTGCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGCAGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAAAATGGGATT | TTAG | CACGTGCTACGG | tcac |
DNA sequence
CGGTTGCGGTGAGGGTGCCAAGCCCCCGTCCTCAAGACGAGGCGAAGTCGAGCGAGTAGGGCGGGGATACGGCACCCGCACGAGTCTCAAACACGACAAA
CCAGAATCTTTACCATGGAATATGTCGTAATTATAGACACATCGTATGATGTACAGCCCTCGCTTCCGCTTGCTTCCCACGACAGTGCAACGCGAAGCGA
TGGACTGGACACGAAACACCGTACGACAAGTGTACAACCACGGTCTCCGCGAATTCAACAACATCCCCGACGACGCAGGCACGCTCCGTCAACGCGTCTG
GAGCGTCCGCGACACGCTCCCCGCGATGAAAGATTGGTGGCCAGCCCTGAAACACGTCTACTCTACCGTCCTCCAGAAAGCCATCGAGCGAATCCGAGAC
AACATCCAGAACCTCGGGAGACTCAAAGCTAAAGGATACGACGTGGGGTCGTTGAACTGGAAGAAACCACGAGAATACCGGAGTTTCACGTACCGACAAT
CAGGCTTCGAACTCGACAAGAAGAGTGGCCCAGACGGACGTGGACTCCTCGTCCTCAAGAAACTCAAAGGCGAAACCCGCGAAATCCCAATTCGCCTCCA
TCGAGACCTTCCAGACCACGAGCAAATCAAAGAAGTCACGCTCAAGAAAGATCCTACGGGCGCGTGGTACGTCTCATTCTGCATCAAAACAGACGAACCC
GAGAAACCAGATGTAGAGGACATTACCCCTGATGACACCGTGGGTCTTGACCTCGGTGTGTTGAACTTCGTTCACGACTCGGGTGGTTGCTTGGTTGGGC
GGCTCGACTTGTCGGCTGACCGTGAGCGCCTCGAACGCGAGCACCGCTCACTCTCGCGCAAACAAGAAGGCTCGAACAATTGGGAGAAACAACGCCGTCG
AGTCGCTACGGTTCACGCTCGGATGACCGCAAAGAAGCAGGATTACAAGCACAAACTCGCGCACTTCTACACCACCGAGTACGACGCCGTGTTTGTCGAA
AACCTGAACGTCAAAGAGATGATTGAAGATCCGCAGAACGCACGGAACAAGGCCGAGGTCGGGTGGCGTGAGTTCATCACCCTCCTCGAACACCACGGTG
ACAAGAACGGCTGTCACGTCGTTGAGGTTGAGCCGCGTGGGACGACCAAGGAATGCGCGGCCTGTGGCGTGGAAACGCATAAGCCATTATGGGCGCGCGA
GCATTCTTGTCCGAGTTGTGGGTTTGAACTCGACAGGGATTGGAACGCGTCGTTGAACGTGCTGTCGCGCGGATTGTCGAAACTAGGAGTGGTTCACTCC
GAATATACGCCTGCGGAGACTGTGACCGCTGTGGATACGCAGAATGTATCTGCAAGTCACGTCGTGGAAACAGGAAGCCCCTGCCTCAAGGAAGCCGCGT
CAGCGGCTGAGTAGGCAGGGGTAGTTCAC
CCAGAATCTTTACCATGGAATATGTCGTAATTATAGACACATCGTATGATGTACAGCCCTCGCTTCCGCTTGCTTCCCACGACAGTGCAACGCGAAGCGA
TGGACTGGACACGAAACACCGTACGACAAGTGTACAACCACGGTCTCCGCGAATTCAACAACATCCCCGACGACGCAGGCACGCTCCGTCAACGCGTCTG
GAGCGTCCGCGACACGCTCCCCGCGATGAAAGATTGGTGGCCAGCCCTGAAACACGTCTACTCTACCGTCCTCCAGAAAGCCATCGAGCGAATCCGAGAC
AACATCCAGAACCTCGGGAGACTCAAAGCTAAAGGATACGACGTGGGGTCGTTGAACTGGAAGAAACCACGAGAATACCGGAGTTTCACGTACCGACAAT
CAGGCTTCGAACTCGACAAGAAGAGTGGCCCAGACGGACGTGGACTCCTCGTCCTCAAGAAACTCAAAGGCGAAACCCGCGAAATCCCAATTCGCCTCCA
TCGAGACCTTCCAGACCACGAGCAAATCAAAGAAGTCACGCTCAAGAAAGATCCTACGGGCGCGTGGTACGTCTCATTCTGCATCAAAACAGACGAACCC
GAGAAACCAGATGTAGAGGACATTACCCCTGATGACACCGTGGGTCTTGACCTCGGTGTGTTGAACTTCGTTCACGACTCGGGTGGTTGCTTGGTTGGGC
GGCTCGACTTGTCGGCTGACCGTGAGCGCCTCGAACGCGAGCACCGCTCACTCTCGCGCAAACAAGAAGGCTCGAACAATTGGGAGAAACAACGCCGTCG
AGTCGCTACGGTTCACGCTCGGATGACCGCAAAGAAGCAGGATTACAAGCACAAACTCGCGCACTTCTACACCACCGAGTACGACGCCGTGTTTGTCGAA
AACCTGAACGTCAAAGAGATGATTGAAGATCCGCAGAACGCACGGAACAAGGCCGAGGTCGGGTGGCGTGAGTTCATCACCCTCCTCGAACACCACGGTG
ACAAGAACGGCTGTCACGTCGTTGAGGTTGAGCCGCGTGGGACGACCAAGGAATGCGCGGCCTGTGGCGTGGAAACGCATAAGCCATTATGGGCGCGCGA
GCATTCTTGTCCGAGTTGTGGGTTTGAACTCGACAGGGATTGGAACGCGTCGTTGAACGTGCTGTCGCGCGGATTGTCGAAACTAGGAGTGGTTCACTCC
GAATATACGCCTGCGGAGACTGTGACCGCTGTGGATACGCAGAATGTATCTGCAAGTCACGTCGTGGAAACAGGAAGCCCCTGCCTCAAGGAAGCCGCGT
CAGCGGCTGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 146 | 1414 | + | No |
AG : TnpB
ORF sequence :
MMYSPRFRLLPTTVQREAMDWTRNTVRQVYNHGLREFNNIPDDAGTLRQRVWSVRDTLPAMKDWWPALKHVYSTVLQKAIERIRDNIQNLGRLKAKGYDV
GSLNWKKPREYRSFTYRQSGFELDKKSGPDGRGLLVLKKLKGETREIPIRLHRDLPDHEQIKEVTLKKDPTGAWYVSFCIKTDEPEKPDVEDITPDDTVG
LDLGVLNFVHDSGGCLVGRLDLSADRERLEREHRSLSRKQEGSNNWEKQRRRVATVHARMTAKKQDYKHKLAHFYTTEYDAVFVENLNVKEMIEDPQNAR
NKAEVGWREFITLLEHHGDKNGCHVVEVEPRGTTKECAACGVETHKPLWAREHSCPSCGFELDRDWNASLNVLSRGLSKLGVVHSEYTPAETVTAVDTQN
VSASHVVETGSPCLKEAASAAE
GSLNWKKPREYRSFTYRQSGFELDKKSGPDGRGLLVLKKLKGETREIPIRLHRDLPDHEQIKEVTLKKDPTGAWYVSFCIKTDEPEKPDVEDITPDDTVG
LDLGVLNFVHDSGGCLVGRLDLSADRERLEREHRSLSRKQEGSNNWEKQRRRVATVHARMTAKKQDYKHKLAHFYTTEYDAVFVENLNVKEMIEDPQNAR
NKAEVGWREFITLLEHHGDKNGCHVVEVEPRGTTKECAACGVETHKPLWAREHSCPSCGFELDRDWNASLNVLSRGLSKLGVVHSEYTPAETVTAVDTQN
VSASHVVETGSPCLKEAASAAE
Blast result :
Comments
ISHarch9 is 86% (TnpB) aa similar to ISNph14.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank