ISHarch8

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 1435 bp

Ends


Left end : CAGAATTGAGGCGAGAATGCCCCATCCTCAAGGAGCGAGAGAAACGAGCGAGTAGGGTGGGGATGAATCGCCGCGCGCCAGTACAAACCATTAACTGAAC II struct. : No
Right end : TCTGGTGGGCTGTCAGACGCAGTCTGACAACGTCATAGAATCAGGAAGCCCCACCCTCAACGAAGCCACAGCAGTGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Comments : There is an insertion into LE.

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CAGACGGTGGCGTTTACTGGCGCAGCACCtcac
GCCGTGCTCGGTTTTACACAGTCACGGCAtcac
CCGACGTGACAGTTTACGCGTGCCAGACAtcac

DNA sequence

CAGAATTGAGGCGAGAATGCCCCATCCTCAAGGAGCGAGAGAAACGAGCGAGTAGGGTGGGGATGAATCGCCGCGCGCCAGTACAAACCATTAACTGAAC
ACATTTCTAATCGATAGACAGCGATGGAGTACAGTCACCGCTACCCTGCATACCCGACACGACAGGTAGCGGCTGAGCTGGAAACTCATATTGACGTTCA
TCGCCAAGCGTATAACTACACTTTGTACGAGTACGAACACGTGGACGCCGACGACATTGGCTCTGCGTACAAACACCACTACCGACTACCCGACTGGAAA
AACGAGTTCCCCGTCTTTTCGGAAGTCAATTCGAAGGCTCTGCAACGAACCGTCGCACGGTTCTACCAGAACCTCGACGGGCTCTCCGAGCAAAAATCGA
ACGGTCGCAAAGTCGGGAAGCTCAACTGGAAGTCGCCGCGAGAGTTCCAGAGTATGACGTATTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGCCG
ACGTGCGACACTCTGGCTCTCTAAAATCGGTGACATCAAAATACGGTACCACCGCGAGATTCCTGACGAAGCGTCCATCAAAGAAGTCACGATTAAGAAG
GAGACAACCGGCGACTGGTTCGTCTCTTTCGGCCTCGAAGCCGACGACGCTGACCTGCCCGAGAAACCCGATGTGGGCTCGCTCAACACGAGTAACAGCG
TCGGTGTTGACCTTGGTATTCTCAACTACATCCACACGTCGGACGGTGGGACTGTGGATTGGCTCAAGCTCGAAGACGAGTACGATCGTCTGCGCCGCGA
GCAACGCAAGTTGTCCCGGAAGCAAGAAGGGTCACGTAACTACGAGAATCAACGCAAGCAGGTTGCCAAGGTGAAGCGTCATATCCGGCGGAAGGTACTG
GACTACCAGCACAAACTATCGACGTGGCTCGTCCGAGAATACGATGCTGTATTCGTCGAGGACTTGGATGTGAAGGGAATGTTAGAGCAGTCGCACAACG
CTCGCAACAAGCAGGATGCGGCGTGGCGACAGTTCATCACGCTCCTCGAATACAAAGCCGAGTTGTACGGTACTCACGTTGTGCAGGTCGAAGCGGCAGG
AACGACAAAAGAGTGTGCGTCGTGTGGGGTGGAAACAGCGAAACCCATCTGGGTTCGTGAACACTCCTGCCCGAGTTGTGGGTTCGAGTGTGACCGTGAC
GCGAACGCGGCGATGAACATCTTGCAGAGAGGCTTTTCTGAATTAGGGCTGGGATGGCCCGAATCAACGCCTGTGGAGACTTCGCTCCCTACGGACACCA
CTTCGGTGTCTGCAAAGCGCGTTCACCAGACTACGTCTGGTGGGCTGTCAGACGCAGTCTGACAACGTCATAGAATCAGGAAGCCCCACCCTCAACGAAG
CCACAGCAGTGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1239 bp412 aa1241362+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYSHRYPAYPTRQVAAELETHIDVHRQAYNYTLYEYEHVDADDIGSAYKHHYRLPDWKNEFPVFSEVNSKALQRTVARFYQNLDGLSEQKSNGRKVGKL
NWKSPREFQSMTYSQSGFELKNTSGRRATLWLSKIGDIKIRYHREIPDEASIKEVTIKKETTGDWFVSFGLEADDADLPEKPDVGSLNTSNSVGVDLGIL
NYIHTSDGGTVDWLKLEDEYDRLRREQRKLSRKQEGSRNYENQRKQVAKVKRHIRRKVLDYQHKLSTWLVREYDAVFVEDLDVKGMLEQSHNARNKQDAA
WRQFITLLEYKAELYGTHVVQVEAAGTTKECASCGVETAKPIWVREHSCPSCGFECDRDANAAMNILQRGFSELGLGWPESTPVETSLPTDTTSVSAKRV
HQTTSGGLSDAV

 

Blast result :
Comments
ISHarch8 is 91% (TnpB) aa similar to ISNma14.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank