ISHarch8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1435 bp
Ends
Left end : CAGAATTGAGGCGAGAATGCCCCATCCTCAAGGAGCGAGAGAAACGAGCGAGTAGGGTGGGGATGAATCGCCGCGCGCCAGTACAAACCATTAACTGAAC II struct. : No
Right end : TCTGGTGGGCTGTCAGACGCAGTCTGACAACGTCATAGAATCAGGAAGCCCCACCCTCAACGAAGCCACAGCAGTGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Comments : There is an insertion into LE.
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CAGACGGTGGCGT | TTAC | TGGCGCAGCACC | tcac |
GCCGTGCTCGGTT | TTAC | ACAGTCACGGCA | tcac |
CCGACGTGACAGT | TTAC | GCGTGCCAGACA | tcac |
DNA sequence
CAGAATTGAGGCGAGAATGCCCCATCCTCAAGGAGCGAGAGAAACGAGCGAGTAGGGTGGGGATGAATCGCCGCGCGCCAGTACAAACCATTAACTGAAC
ACATTTCTAATCGATAGACAGCGATGGAGTACAGTCACCGCTACCCTGCATACCCGACACGACAGGTAGCGGCTGAGCTGGAAACTCATATTGACGTTCA
TCGCCAAGCGTATAACTACACTTTGTACGAGTACGAACACGTGGACGCCGACGACATTGGCTCTGCGTACAAACACCACTACCGACTACCCGACTGGAAA
AACGAGTTCCCCGTCTTTTCGGAAGTCAATTCGAAGGCTCTGCAACGAACCGTCGCACGGTTCTACCAGAACCTCGACGGGCTCTCCGAGCAAAAATCGA
ACGGTCGCAAAGTCGGGAAGCTCAACTGGAAGTCGCCGCGAGAGTTCCAGAGTATGACGTATTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGCCG
ACGTGCGACACTCTGGCTCTCTAAAATCGGTGACATCAAAATACGGTACCACCGCGAGATTCCTGACGAAGCGTCCATCAAAGAAGTCACGATTAAGAAG
GAGACAACCGGCGACTGGTTCGTCTCTTTCGGCCTCGAAGCCGACGACGCTGACCTGCCCGAGAAACCCGATGTGGGCTCGCTCAACACGAGTAACAGCG
TCGGTGTTGACCTTGGTATTCTCAACTACATCCACACGTCGGACGGTGGGACTGTGGATTGGCTCAAGCTCGAAGACGAGTACGATCGTCTGCGCCGCGA
GCAACGCAAGTTGTCCCGGAAGCAAGAAGGGTCACGTAACTACGAGAATCAACGCAAGCAGGTTGCCAAGGTGAAGCGTCATATCCGGCGGAAGGTACTG
GACTACCAGCACAAACTATCGACGTGGCTCGTCCGAGAATACGATGCTGTATTCGTCGAGGACTTGGATGTGAAGGGAATGTTAGAGCAGTCGCACAACG
CTCGCAACAAGCAGGATGCGGCGTGGCGACAGTTCATCACGCTCCTCGAATACAAAGCCGAGTTGTACGGTACTCACGTTGTGCAGGTCGAAGCGGCAGG
AACGACAAAAGAGTGTGCGTCGTGTGGGGTGGAAACAGCGAAACCCATCTGGGTTCGTGAACACTCCTGCCCGAGTTGTGGGTTCGAGTGTGACCGTGAC
GCGAACGCGGCGATGAACATCTTGCAGAGAGGCTTTTCTGAATTAGGGCTGGGATGGCCCGAATCAACGCCTGTGGAGACTTCGCTCCCTACGGACACCA
CTTCGGTGTCTGCAAAGCGCGTTCACCAGACTACGTCTGGTGGGCTGTCAGACGCAGTCTGACAACGTCATAGAATCAGGAAGCCCCACCCTCAACGAAG
CCACAGCAGTGGCTGAGTAGGGTGGGGTAGTTCAC
ACATTTCTAATCGATAGACAGCGATGGAGTACAGTCACCGCTACCCTGCATACCCGACACGACAGGTAGCGGCTGAGCTGGAAACTCATATTGACGTTCA
TCGCCAAGCGTATAACTACACTTTGTACGAGTACGAACACGTGGACGCCGACGACATTGGCTCTGCGTACAAACACCACTACCGACTACCCGACTGGAAA
AACGAGTTCCCCGTCTTTTCGGAAGTCAATTCGAAGGCTCTGCAACGAACCGTCGCACGGTTCTACCAGAACCTCGACGGGCTCTCCGAGCAAAAATCGA
ACGGTCGCAAAGTCGGGAAGCTCAACTGGAAGTCGCCGCGAGAGTTCCAGAGTATGACGTATTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGCCG
ACGTGCGACACTCTGGCTCTCTAAAATCGGTGACATCAAAATACGGTACCACCGCGAGATTCCTGACGAAGCGTCCATCAAAGAAGTCACGATTAAGAAG
GAGACAACCGGCGACTGGTTCGTCTCTTTCGGCCTCGAAGCCGACGACGCTGACCTGCCCGAGAAACCCGATGTGGGCTCGCTCAACACGAGTAACAGCG
TCGGTGTTGACCTTGGTATTCTCAACTACATCCACACGTCGGACGGTGGGACTGTGGATTGGCTCAAGCTCGAAGACGAGTACGATCGTCTGCGCCGCGA
GCAACGCAAGTTGTCCCGGAAGCAAGAAGGGTCACGTAACTACGAGAATCAACGCAAGCAGGTTGCCAAGGTGAAGCGTCATATCCGGCGGAAGGTACTG
GACTACCAGCACAAACTATCGACGTGGCTCGTCCGAGAATACGATGCTGTATTCGTCGAGGACTTGGATGTGAAGGGAATGTTAGAGCAGTCGCACAACG
CTCGCAACAAGCAGGATGCGGCGTGGCGACAGTTCATCACGCTCCTCGAATACAAAGCCGAGTTGTACGGTACTCACGTTGTGCAGGTCGAAGCGGCAGG
AACGACAAAAGAGTGTGCGTCGTGTGGGGTGGAAACAGCGAAACCCATCTGGGTTCGTGAACACTCCTGCCCGAGTTGTGGGTTCGAGTGTGACCGTGAC
GCGAACGCGGCGATGAACATCTTGCAGAGAGGCTTTTCTGAATTAGGGCTGGGATGGCCCGAATCAACGCCTGTGGAGACTTCGCTCCCTACGGACACCA
CTTCGGTGTCTGCAAAGCGCGTTCACCAGACTACGTCTGGTGGGCTGTCAGACGCAGTCTGACAACGTCATAGAATCAGGAAGCCCCACCCTCAACGAAG
CCACAGCAGTGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 124 | 1362 | + | No |
AG : TnpB
ORF sequence :
MEYSHRYPAYPTRQVAAELETHIDVHRQAYNYTLYEYEHVDADDIGSAYKHHYRLPDWKNEFPVFSEVNSKALQRTVARFYQNLDGLSEQKSNGRKVGKL
NWKSPREFQSMTYSQSGFELKNTSGRRATLWLSKIGDIKIRYHREIPDEASIKEVTIKKETTGDWFVSFGLEADDADLPEKPDVGSLNTSNSVGVDLGIL
NYIHTSDGGTVDWLKLEDEYDRLRREQRKLSRKQEGSRNYENQRKQVAKVKRHIRRKVLDYQHKLSTWLVREYDAVFVEDLDVKGMLEQSHNARNKQDAA
WRQFITLLEYKAELYGTHVVQVEAAGTTKECASCGVETAKPIWVREHSCPSCGFECDRDANAAMNILQRGFSELGLGWPESTPVETSLPTDTTSVSAKRV
HQTTSGGLSDAV
NWKSPREFQSMTYSQSGFELKNTSGRRATLWLSKIGDIKIRYHREIPDEASIKEVTIKKETTGDWFVSFGLEADDADLPEKPDVGSLNTSNSVGVDLGIL
NYIHTSDGGTVDWLKLEDEYDRLRREQRKLSRKQEGSRNYENQRKQVAKVKRHIRRKVLDYQHKLSTWLVREYDAVFVEDLDVKGMLEQSHNARNKQDAA
WRQFITLLEYKAELYGTHVVQVEAAGTTKECASCGVETAKPIWVREHSCPSCGFECDRDANAAMNILQRGFSELGLGWPESTPVETSLPTDTTSVSAKRV
HQTTSGGLSDAV
Blast result :
Comments
ISHarch8 is 91% (TnpB) aa similar to ISNma14.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank