ISNpe28
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003373 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 plasmid pNATPE01 |
DNA section
IS Length : 944 bp
Ends
IR Length : 21/25
IRL : CGCTCATCTCGATAAGTCGTAACATCAATTTTCCTTACTCTCCAAGTGTC
IRR : CGCTCATCCCGATACATTGTAACATAGGAGTTTCTCGAACCAGCTATCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTGGCCGGT | CTAAGGAA | AAGAAAGTGT | 8 |
DNA sequence
CGCTCATCTCGATAAGTCGTAACATCAATTTTCCTTACTCTCCAAGTGTCTTCCAAGATGGACGAGAAGTCTGCGCAAGTGTTCCTTCCACCACGTGAGC
GGTGCTTTGAACGTCTCCGTCTCGCCCGCTTCGGCGAGACGGTGACGTGTGTCCATTGCGAGAGTGACGACGTTGTCAAGCGCGGAACAACCGGAAAAGA
CGCCCAGCAGTACTGGTGCAAGGGGTGTGAGACGTACTTCAACGACCTCACAAACACGATCTTCGGCCAACATCGCTTCGAACTGGAAGAGATGTTCTAT
ATCGTCAAGGAGATGCGATCTGAGCCGACCGCTCAGATCGCTCGTGACCTTGGCCGAGACTACGAAGCTGTTCTCAACTTCGTTCACAAAGTCCAGGATG
TGAGCGGGGAGATCGATGAATTTGAGCTGTACGATGTCTGTGAAGCTGACGAGATCTACGTAACAGCTGGTGAGAAAGGGATCGAAGACGAGGATCAGAG
TCCGCGCAAGCGCGGACTCAAAAAAAGGGACGAGGACGATTCGAATCAGACAAACCACCGGTGTTGACACTCGTCCGTCGGGATGACGGACGAGTTCGGT
TTCTCGTCTGCAAGGATCTCCAAGACGCCGACGAAGACATCGCTGAATACGGTGATGGAAGCGTCATCCTCTGTACCGATGATTACACAATCTACGACGA
GATCGAGGAGAAGGAGGGGGTGGACGGCCATCTGGCCGTCACCCACTCCGACACCTACGTCATCGGCGATGCCCACACGAACACCTGTGAGAACCGCCAC
AGCTTCCTTCGCCAGTGGCTGGCGAAGTTCAGAGGTGTCTCAAAACATCATCTCCAACGGTATCTCAATTTCCTTGAACTGAAACTCAACGAACCAGATA
GCTGGTTCGAGAAACTCCTATGTTACAATGTATCGGGATGAGCG
GGTGCTTTGAACGTCTCCGTCTCGCCCGCTTCGGCGAGACGGTGACGTGTGTCCATTGCGAGAGTGACGACGTTGTCAAGCGCGGAACAACCGGAAAAGA
CGCCCAGCAGTACTGGTGCAAGGGGTGTGAGACGTACTTCAACGACCTCACAAACACGATCTTCGGCCAACATCGCTTCGAACTGGAAGAGATGTTCTAT
ATCGTCAAGGAGATGCGATCTGAGCCGACCGCTCAGATCGCTCGTGACCTTGGCCGAGACTACGAAGCTGTTCTCAACTTCGTTCACAAAGTCCAGGATG
TGAGCGGGGAGATCGATGAATTTGAGCTGTACGATGTCTGTGAAGCTGACGAGATCTACGTAACAGCTGGTGAGAAAGGGATCGAAGACGAGGATCAGAG
TCCGCGCAAGCGCGGACTCAAAAAAAGGGACGAGGACGATTCGAATCAGACAAACCACCGGTGTTGACACTCGTCCGTCGGGATGACGGACGAGTTCGGT
TTCTCGTCTGCAAGGATCTCCAAGACGCCGACGAAGACATCGCTGAATACGGTGATGGAAGCGTCATCCTCTGTACCGATGATTACACAATCTACGACGA
GATCGAGGAGAAGGAGGGGGTGGACGGCCATCTGGCCGTCACCCACTCCGACACCTACGTCATCGGCGATGCCCACACGAACACCTGTGAGAACCGCCAC
AGCTTCCTTCGCCAGTGGCTGGCGAAGTTCAGAGGTGTCTCAAAACATCATCTCCAACGGTATCTCAATTTCCTTGAACTGAAACTCAACGAACCAGATA
GCTGGTTCGAGAAACTCCTATGTTACAATGTATCGGGATGAGCG
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
510 bp | 169 aa | 58 | 567 | + | No |
Description : First part of the transposase
ORF sequence :
MDEKSAQVFLPPRERCFERLRLARFGETVTCVHCESDDVVKRGTTGKDAQQYWCKGCETYFNDLTNTIFGQHRFELEEMFYIVKEMRSEPTAQIARDLGR
DYEAVLNFVHKVQDVSGEIDEFELYDVCEADEIYVTAGEKGIEDEDQSPRKRGLKKRDEDDSNQTNHRC
DYEAVLNFVHKVQDVSGEIDEFELYDVCEADEIYVTAGEKGIEDEDQSPRKRGLKKRDEDDSNQTNHRC
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
468 bp | 155 aa | 474 | 941 | + | No |
Description : Second part of the transposase
ORF sequence :
ERDRRRGSESAQARTQKKGRGRFESDKPPVLTLVRRDDGRVRFLVCKDLQDADEDIAEYGDGSVILCTDDYTIYDEIEEKEGVDGHLAVTHSDTYVIGDA
HTNTCENRHSFLRQWLAKFRGVSKHHLQRYLNFLELKLNEPDSWFEKLLCYNVSG
HTNTCENRHSFLRQWLAKFRGVSKHHLQRYLNFLELKLNEPDSWFEKLLCYNVSG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
881 bp | 294 aa | 58 | 938 | + | Yes |
Chemistry : DDE
ORF sequence :
MDEKSAQVFLPPRERCFERLRLARFGETVTCVHCESDDVVKRGTTGKDAQQYWCKGCETYFNDLTNTIFGQHRFELEEMFYIVKEMRSEPTAQIARDLGR
DYEAVLNFVHKVQDVSGEIDEFELYDVCEADEIYVTAGEKGIEDEDQSPRKRGLKKKGRGRFESDKPPVLTLVRRDDGRVRFLVCKDLQDADEDIAEYGD
GSVILCTDDYTIYDEIEEKEGVDGHLAVTHSDTYVIGDAHTNTCENRHSFLRQWLAKFRGVSKHHLQRYLNFLELKLNEPDSWFEKLLCYNVSG
DYEAVLNFVHKVQDVSGEIDEFELYDVCEADEIYVTAGEKGIEDEDQSPRKRGLKKKGRGRFESDKPPVLTLVRRDDGRVRFLVCKDLQDADEDIAEYGD
GSVILCTDDYTIYDEIEEKEGVDGHLAVTHSDTYVIGDAHTNTCENRHSFLRQWLAKFRGVSKHHLQRYLNFLELKLNEPDSWFEKLLCYNVSG
Blast result :
Comments
ISNpe28 is 52% aa similar to ISHvo5.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Pfeiffer F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission to GenBanK.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission to GenBanK.