ISNph28
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1394 bp
Ends
Left end : AGCGGATACAGCGCGGAAACCCACCCGTTCACGGGTGGGAGGAAGCGCGTACGCTCCGTGCGACAACCCACCGACTACGATAGGGCTGACTCCCAAGCAT II struct. : Yes
Right end : ATGCTGAACGCGAACGGTGAGTATGAATCACCTGCCGATGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCAACGGCTTTAGCCGTTGGTTAGCTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CACCGGCCTGCT | TCAT | AGGCTCTCACCG | ttac |
DNA sequence
AGCGGATACAGCGCGGAAACCCACCCGTTCACGGGTGGGAGGAAGCGCGTACGCTCCGTGCGACAACCCACCGACTACGATAGGGCTGACTCCCAAGCAT
TTTTGAACTACCAAATCTACATATGATGTATGGAGAAGCGGCGTACTGTCCCGGTCAAACTCGACGTGGACAGCCACAGCGCCGCACTCCTCGAAGACAC
CGTAGACGAATTCCTCTGGGCCGCCAACTACACAACTCGCCACGCTTTCAAAGGCGAATACGTCACGACGAGCAAGACCACGCTCCACGACGACACCTAC
GAAGACGTGCGCGACCAGACGGCGTTACACAGCAACCACGTCCAAGCAGCCCGGAACAAGGCCGCTGAAGCCTGCAAAAGCGTCGTTGCACGCTGGAAGA
ACGGCAAGAAGGCGTCGATGCCGCACTTCACCAGTCCGCACCTCGTCTACGACCACCGCACAGCCACGTTCCACGACGAGTACGTGTCGCTGGCAACCGT
CGACGGACGCATTGAAACTGACTACGTGTTGCCAGACAAGACCAGGGATACGCCCCACACGGACTACTTCTTTTCCGACGAGTACGAAACCGCAGGGGCA
GAACTGCACTACACGAACGGCAACTGGATGCTTCACATCCACTGCAAGACGGACGTGGAGTCTAACACGCCGGAACAGGCAACACCGGAGAATGGAACGG
TTCTCGGGGTTGACCTCGGCGTGAACAATCTCGCAGTTGCCTCAACTGGCACGTTCTGGACGGGCGACGAGTTCGACCACTGGCGGCGTGAATACGAGAA
GCGACGTGGCGACCTACAAGAGTGCGGAACACGATGGGCACACGAGAATATGCAGGCAGTTGGTCGCAAAGAGGAAGGGCGGTTCAAGCAGACACTCCAT
CGCATATCGAACGAGTTGGTGGCTGAAGCCCACAAGTACGAGTGTTCGGTAATCGCGTTCGAGGAGTTGACCGATATTCGTGAGCGTACTGGTGCGTCGT
GGGGGCACAAGTGGGCGTTCAACCGTCTGTACGAATATGTCGAGTACAAAACCAAAGAATACGGTATCACGGTTGCGCAGGTAGACCCTGAGAACACGTC
GCGTCGGTGTTCGACGTGTGGGTTTACGCACCCGGATAACCGCGAAAGCGAGTCGTTTGAGTGCTTGAAATGTGGGTATGAGAACCATGCTGATTACAAC
GCCGCGAAGAACATCGGTTTGCGGTATCTTCGTCGCAACCAAACTGGGGGCGACGAAGGCGCACCCGTAGGCGTGCGCTTGAACAGTGGGATGCTGAACG
CGAACGGTGAGTATGAATCACCTGCCGATGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCAACGGCTTTAGCCGTTGGTTAGCTTAC
TTTTGAACTACCAAATCTACATATGATGTATGGAGAAGCGGCGTACTGTCCCGGTCAAACTCGACGTGGACAGCCACAGCGCCGCACTCCTCGAAGACAC
CGTAGACGAATTCCTCTGGGCCGCCAACTACACAACTCGCCACGCTTTCAAAGGCGAATACGTCACGACGAGCAAGACCACGCTCCACGACGACACCTAC
GAAGACGTGCGCGACCAGACGGCGTTACACAGCAACCACGTCCAAGCAGCCCGGAACAAGGCCGCTGAAGCCTGCAAAAGCGTCGTTGCACGCTGGAAGA
ACGGCAAGAAGGCGTCGATGCCGCACTTCACCAGTCCGCACCTCGTCTACGACCACCGCACAGCCACGTTCCACGACGAGTACGTGTCGCTGGCAACCGT
CGACGGACGCATTGAAACTGACTACGTGTTGCCAGACAAGACCAGGGATACGCCCCACACGGACTACTTCTTTTCCGACGAGTACGAAACCGCAGGGGCA
GAACTGCACTACACGAACGGCAACTGGATGCTTCACATCCACTGCAAGACGGACGTGGAGTCTAACACGCCGGAACAGGCAACACCGGAGAATGGAACGG
TTCTCGGGGTTGACCTCGGCGTGAACAATCTCGCAGTTGCCTCAACTGGCACGTTCTGGACGGGCGACGAGTTCGACCACTGGCGGCGTGAATACGAGAA
GCGACGTGGCGACCTACAAGAGTGCGGAACACGATGGGCACACGAGAATATGCAGGCAGTTGGTCGCAAAGAGGAAGGGCGGTTCAAGCAGACACTCCAT
CGCATATCGAACGAGTTGGTGGCTGAAGCCCACAAGTACGAGTGTTCGGTAATCGCGTTCGAGGAGTTGACCGATATTCGTGAGCGTACTGGTGCGTCGT
GGGGGCACAAGTGGGCGTTCAACCGTCTGTACGAATATGTCGAGTACAAAACCAAAGAATACGGTATCACGGTTGCGCAGGTAGACCCTGAGAACACGTC
GCGTCGGTGTTCGACGTGTGGGTTTACGCACCCGGATAACCGCGAAAGCGAGTCGTTTGAGTGCTTGAAATGTGGGTATGAGAACCATGCTGATTACAAC
GCCGCGAAGAACATCGGTTTGCGGTATCTTCGTCGCAACCAAACTGGGGGCGACGAAGGCGCACCCGTAGGCGTGCGCTTGAACAGTGGGATGCTGAACG
CGAACGGTGAGTATGAATCACCTGCCGATGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCAACGGCTTTAGCCGTTGGTTAGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 130 | 1374 | + | No |
AG : TnpB
ORF sequence :
MEKRRTVPVKLDVDSHSAALLEDTVDEFLWAANYTTRHAFKGEYVTTSKTTLHDDTYEDVRDQTALHSNHVQAARNKAAEACKSVVARWKNGKKASMPHF
TSPHLVYDHRTATFHDEYVSLATVDGRIETDYVLPDKTRDTPHTDYFFSDEYETAGAELHYTNGNWMLHIHCKTDVESNTPEQATPENGTVLGVDLGVNN
LAVASTGTFWTGDEFDHWRREYEKRRGDLQECGTRWAHENMQAVGRKEEGRFKQTLHRISNELVAEAHKYECSVIAFEELTDIRERTGASWGHKWAFNRL
YEYVEYKTKEYGITVAQVDPENTSRRCSTCGFTHPDNRESESFECLKCGYENHADYNAAKNIGLRYLRRNQTGGDEGAPVGVRLNSGMLNANGEYESPAD
DSARAGVHAESQRL
TSPHLVYDHRTATFHDEYVSLATVDGRIETDYVLPDKTRDTPHTDYFFSDEYETAGAELHYTNGNWMLHIHCKTDVESNTPEQATPENGTVLGVDLGVNN
LAVASTGTFWTGDEFDHWRREYEKRRGDLQECGTRWAHENMQAVGRKEEGRFKQTLHRISNELVAEAHKYECSVIAFEELTDIRERTGASWGHKWAFNRL
YEYVEYKTKEYGITVAQVDPENTSRRCSTCGFTHPDNRESESFECLKCGYENHADYNAAKNIGLRYLRRNQTGGDEGAPVGVRLNSGMLNANGEYESPAD
DSARAGVHAESQRL
Blast result :
Comments
ISNph28 is 91% (TnpB) aa similar to ISHhu10.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343