ISNph28

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1394 bp

Ends


Left end : AGCGGATACAGCGCGGAAACCCACCCGTTCACGGGTGGGAGGAAGCGCGTACGCTCCGTGCGACAACCCACCGACTACGATAGGGCTGACTCCCAAGCAT II struct. : Yes
Right end : ATGCTGAACGCGAACGGTGAGTATGAATCACCTGCCGATGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCAACGGCTTTAGCCGTTGGTTAGCTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CACCGGCCTGCTTCATAGGCTCTCACCGttac

DNA sequence

AGCGGATACAGCGCGGAAACCCACCCGTTCACGGGTGGGAGGAAGCGCGTACGCTCCGTGCGACAACCCACCGACTACGATAGGGCTGACTCCCAAGCAT
TTTTGAACTACCAAATCTACATATGATGTATGGAGAAGCGGCGTACTGTCCCGGTCAAACTCGACGTGGACAGCCACAGCGCCGCACTCCTCGAAGACAC
CGTAGACGAATTCCTCTGGGCCGCCAACTACACAACTCGCCACGCTTTCAAAGGCGAATACGTCACGACGAGCAAGACCACGCTCCACGACGACACCTAC
GAAGACGTGCGCGACCAGACGGCGTTACACAGCAACCACGTCCAAGCAGCCCGGAACAAGGCCGCTGAAGCCTGCAAAAGCGTCGTTGCACGCTGGAAGA
ACGGCAAGAAGGCGTCGATGCCGCACTTCACCAGTCCGCACCTCGTCTACGACCACCGCACAGCCACGTTCCACGACGAGTACGTGTCGCTGGCAACCGT
CGACGGACGCATTGAAACTGACTACGTGTTGCCAGACAAGACCAGGGATACGCCCCACACGGACTACTTCTTTTCCGACGAGTACGAAACCGCAGGGGCA
GAACTGCACTACACGAACGGCAACTGGATGCTTCACATCCACTGCAAGACGGACGTGGAGTCTAACACGCCGGAACAGGCAACACCGGAGAATGGAACGG
TTCTCGGGGTTGACCTCGGCGTGAACAATCTCGCAGTTGCCTCAACTGGCACGTTCTGGACGGGCGACGAGTTCGACCACTGGCGGCGTGAATACGAGAA
GCGACGTGGCGACCTACAAGAGTGCGGAACACGATGGGCACACGAGAATATGCAGGCAGTTGGTCGCAAAGAGGAAGGGCGGTTCAAGCAGACACTCCAT
CGCATATCGAACGAGTTGGTGGCTGAAGCCCACAAGTACGAGTGTTCGGTAATCGCGTTCGAGGAGTTGACCGATATTCGTGAGCGTACTGGTGCGTCGT
GGGGGCACAAGTGGGCGTTCAACCGTCTGTACGAATATGTCGAGTACAAAACCAAAGAATACGGTATCACGGTTGCGCAGGTAGACCCTGAGAACACGTC
GCGTCGGTGTTCGACGTGTGGGTTTACGCACCCGGATAACCGCGAAAGCGAGTCGTTTGAGTGCTTGAAATGTGGGTATGAGAACCATGCTGATTACAAC
GCCGCGAAGAACATCGGTTTGCGGTATCTTCGTCGCAACCAAACTGGGGGCGACGAAGGCGCACCCGTAGGCGTGCGCTTGAACAGTGGGATGCTGAACG
CGAACGGTGAGTATGAATCACCTGCCGATGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCAACGGCTTTAGCCGTTGGTTAGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa1301374+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEKRRTVPVKLDVDSHSAALLEDTVDEFLWAANYTTRHAFKGEYVTTSKTTLHDDTYEDVRDQTALHSNHVQAARNKAAEACKSVVARWKNGKKASMPHF
TSPHLVYDHRTATFHDEYVSLATVDGRIETDYVLPDKTRDTPHTDYFFSDEYETAGAELHYTNGNWMLHIHCKTDVESNTPEQATPENGTVLGVDLGVNN
LAVASTGTFWTGDEFDHWRREYEKRRGDLQECGTRWAHENMQAVGRKEEGRFKQTLHRISNELVAEAHKYECSVIAFEELTDIRERTGASWGHKWAFNRL
YEYVEYKTKEYGITVAQVDPENTSRRCSTCGFTHPDNRESESFECLKCGYENHADYNAAKNIGLRYLRRNQTGGDEGAPVGVRLNSGMLNANGEYESPAD
DSARAGVHAESQRL

 

Blast result :
Comments
ISNph28 is 91% (TnpB) aa similar to ISHhu10.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343