ISNph27
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1714 bp
Ends
Left end : CTTGATACAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGCGTTCCGACGCTTAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTACG II struct. : No
Right end : AGTACCGTCCCCCGTGACGGGAATGTTGTCTCCGGCGATTCTTAGACCGGCTGAGACTCCCACGGAGAAACCGCGCCATTCACGGCGCGGAGGATGTCAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGCAGATATCCG | CTAT | ATCGACCGCTCG | tcat |
DNA sequence
CTTGATACAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGCGTTCCGACGCTTAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTACG
CTCCGGTGAGAAACCGCCACGTCACGGCTGGTCCTGAGTCTCCAATGCTTCAAGACCTGCTTCTAACACCTCTGTATAGGCTTCCGAAAGGTCCAAATCG
TTTGCTTCTGCGTAGTCTTTGACTCGGCCACCGAGCGTGTGTGAAATGTCGATGTTCGGTCGCATACGAAAAGACTTTAAGACTAAAAGTATAAGAATCT
GTTGTCGTGAAGCGTGCCAACACGTTCGCTATGCGACCGCTCACCGCCGACGATGAACAGGTGCTACGCGACCTGTTGGACGCTTCCGCCGCTCTCTGGA
ACGAAATCAATTACCAGCGGCTCATGCGCTACAACGACAAGGACGGCTTCGAGGACGAGGACGTGTGGGACGCCGATACCGGCGCTCTCGAAGGCAAATA
CAAAGCCGTTCTCGGTGCGTCAACCGCTCAAACTGTCCGGCGAGCAAACACCGAAGCGTGGCGGTCGTTCTTTCGATTGAAAAAGCAGTTTCACGACGAG
TCAAACACGTCGGTTACGGAACACCCAGAACCGCCGGGCTTCCGTGGAAACAAAGACGACGGGCGCGTCCTCAAAGGCGTTGTCCGTAAGGACGCATACA
GCGTCGAATGGGGCGACCGCTCCCGACTCGAGATGGTCGTCGGAGAACAACTCCGAGACAGGCACAACAGCCCGAAAAGTCGCCTCCGGTTGGAAATTGT
TGGCGACCCGAACTGGTCTGACTACGAGGACCAAGGCCGACTAGAACTGTGGTACGACGAGACTGATTGCACCTTCCGAGCTTCGCAACCCGTGACTGTT
TCTGACGATGCACGGGCCACTCCACTGGCCAACGAGAAGGCCGCTCTAGACATTGGTGCAAACAACCTCGTCGCTTGTACCACCACAACCGGCCAGCAGT
ACCTGTATGAAGGCCGCGAGTTGTTTCAGCGATTCCGTGAGACGACACGAGAAATAGCCCGGTTGCAGTCCAAGCTACCGGAAGGCCGATACAGTAGCAA
GCGTATCCGGCGACTGTACCGGAAACGGACTCGTCGCCGCGACCACGCACAAGAGACACTGTGTCGTGACTTGCTCGAACAGCTGTACGGCGAGGGTGTG
GACACGGTGTATATCGGCGGGTTGACCGATGTACTCGAGACGCACTGGTCGGCTGAGACGAACGCCAAGACACACAACTTCTGGGCGTTCAAGCAATTCA
CCGAGCGACTGGCGTGGACCGCCGACGAATACGGCATCTCGGTCGAAGTGCGGTCAGAGGCATGGACCAGTCAGGAGTGCCCACAGTGCGGTTCGACAGA
CCGAACGACACGGCAGCAGGACACGCTCACCTGTCCGTGTGGATTCGAAGGGCACGCCGACGTTACGGCGTCAGAAACGTTCTTAGAGCGGCACACAGAG
AAAGCAGTCAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAATGGTCGGAGTCACCACGCTCTCCCGCGAGGGAAAGTCCCAAAGAAC
AGCGCACAGACCCGAGTACCGTCCCCCGTGACGGGAATGTTGTCTCCGGCGATTCTTAGACCGGCTGAGACTCCCACGGAGAAACCGCGCCATTCACGGC
GCGGAGGATGTCAT
CTCCGGTGAGAAACCGCCACGTCACGGCTGGTCCTGAGTCTCCAATGCTTCAAGACCTGCTTCTAACACCTCTGTATAGGCTTCCGAAAGGTCCAAATCG
TTTGCTTCTGCGTAGTCTTTGACTCGGCCACCGAGCGTGTGTGAAATGTCGATGTTCGGTCGCATACGAAAAGACTTTAAGACTAAAAGTATAAGAATCT
GTTGTCGTGAAGCGTGCCAACACGTTCGCTATGCGACCGCTCACCGCCGACGATGAACAGGTGCTACGCGACCTGTTGGACGCTTCCGCCGCTCTCTGGA
ACGAAATCAATTACCAGCGGCTCATGCGCTACAACGACAAGGACGGCTTCGAGGACGAGGACGTGTGGGACGCCGATACCGGCGCTCTCGAAGGCAAATA
CAAAGCCGTTCTCGGTGCGTCAACCGCTCAAACTGTCCGGCGAGCAAACACCGAAGCGTGGCGGTCGTTCTTTCGATTGAAAAAGCAGTTTCACGACGAG
TCAAACACGTCGGTTACGGAACACCCAGAACCGCCGGGCTTCCGTGGAAACAAAGACGACGGGCGCGTCCTCAAAGGCGTTGTCCGTAAGGACGCATACA
GCGTCGAATGGGGCGACCGCTCCCGACTCGAGATGGTCGTCGGAGAACAACTCCGAGACAGGCACAACAGCCCGAAAAGTCGCCTCCGGTTGGAAATTGT
TGGCGACCCGAACTGGTCTGACTACGAGGACCAAGGCCGACTAGAACTGTGGTACGACGAGACTGATTGCACCTTCCGAGCTTCGCAACCCGTGACTGTT
TCTGACGATGCACGGGCCACTCCACTGGCCAACGAGAAGGCCGCTCTAGACATTGGTGCAAACAACCTCGTCGCTTGTACCACCACAACCGGCCAGCAGT
ACCTGTATGAAGGCCGCGAGTTGTTTCAGCGATTCCGTGAGACGACACGAGAAATAGCCCGGTTGCAGTCCAAGCTACCGGAAGGCCGATACAGTAGCAA
GCGTATCCGGCGACTGTACCGGAAACGGACTCGTCGCCGCGACCACGCACAAGAGACACTGTGTCGTGACTTGCTCGAACAGCTGTACGGCGAGGGTGTG
GACACGGTGTATATCGGCGGGTTGACCGATGTACTCGAGACGCACTGGTCGGCTGAGACGAACGCCAAGACACACAACTTCTGGGCGTTCAAGCAATTCA
CCGAGCGACTGGCGTGGACCGCCGACGAATACGGCATCTCGGTCGAAGTGCGGTCAGAGGCATGGACCAGTCAGGAGTGCCCACAGTGCGGTTCGACAGA
CCGAACGACACGGCAGCAGGACACGCTCACCTGTCCGTGTGGATTCGAAGGGCACGCCGACGTTACGGCGTCAGAAACGTTCTTAGAGCGGCACACAGAG
AAAGCAGTCAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAATGGTCGGAGTCACCACGCTCTCCCGCGAGGGAAAGTCCCAAAGAAC
AGCGCACAGACCCGAGTACCGTCCCCCGTGACGGGAATGTTGTCTCCGGCGATTCTTAGACCGGCTGAGACTCCCACGGAGAAACCGCGCCATTCACGGC
GCGGAGGATGTCAT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
144 bp | 47 aa | 265 | 122 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRPNIDISHTLGGRVKDYAEANDLDLSEAYTEVLEAGLEALETQDQP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1353 bp | 450 aa | 307 | 1659 | + | No |
AG : TnpB
ORF sequence :
MKRANTFAMRPLTADDEQVLRDLLDASAALWNEINYQRLMRYNDKDGFEDEDVWDADTGALEGKYKAVLGASTAQTVRRANTEAWRSFFRLKKQFHDESN
TSVTEHPEPPGFRGNKDDGRVLKGVVRKDAYSVEWGDRSRLEMVVGEQLRDRHNSPKSRLRLEIVGDPNWSDYEDQGRLELWYDETDCTFRASQPVTVSD
DARATPLANEKAALDIGANNLVACTTTTGQQYLYEGRELFQRFRETTREIARLQSKLPEGRYSSKRIRRLYRKRTRRRDHAQETLCRDLLEQLYGEGVDT
VYIGGLTDVLETHWSAETNAKTHNFWAFKQFTERLAWTADEYGISVEVRSEAWTSQECPQCGSTDRTTRQQDTLTCPCGFEGHADVTASETFLERHTEKA
VRPMARPVRFEWDDHEWSESPRSPARESPKEQRTDPSTVPRDGNVVSGDS
TSVTEHPEPPGFRGNKDDGRVLKGVVRKDAYSVEWGDRSRLEMVVGEQLRDRHNSPKSRLRLEIVGDPNWSDYEDQGRLELWYDETDCTFRASQPVTVSD
DARATPLANEKAALDIGANNLVACTTTTGQQYLYEGRELFQRFRETTREIARLQSKLPEGRYSSKRIRRLYRKRTRRRDHAQETLCRDLLEQLYGEGVDT
VYIGGLTDVLETHWSAETNAKTHNFWAFKQFTERLAWTADEYGISVEVRSEAWTSQECPQCGSTDRTTRQQDTLTCPCGFEGHADVTASETFLERHTEKA
VRPMARPVRFEWDDHEWSESPRSPARESPKEQRTDPSTVPRDGNVVSGDS
Blast result :
Comments
ISNph27 is 89% aa similar to ISNamo22. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343