ISNph27

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1714 bp

Ends


Left end : CTTGATACAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGCGTTCCGACGCTTAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTACG II struct. : No
Right end : AGTACCGTCCCCCGTGACGGGAATGTTGTCTCCGGCGATTCTTAGACCGGCTGAGACTCCCACGGAGAAACCGCGCCATTCACGGCGCGGAGGATGTCAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGCAGATATCCGCTATATCGACCGCTCGtcat

DNA sequence

CTTGATACAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGCGTTCCGACGCTTAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTACG
CTCCGGTGAGAAACCGCCACGTCACGGCTGGTCCTGAGTCTCCAATGCTTCAAGACCTGCTTCTAACACCTCTGTATAGGCTTCCGAAAGGTCCAAATCG
TTTGCTTCTGCGTAGTCTTTGACTCGGCCACCGAGCGTGTGTGAAATGTCGATGTTCGGTCGCATACGAAAAGACTTTAAGACTAAAAGTATAAGAATCT
GTTGTCGTGAAGCGTGCCAACACGTTCGCTATGCGACCGCTCACCGCCGACGATGAACAGGTGCTACGCGACCTGTTGGACGCTTCCGCCGCTCTCTGGA
ACGAAATCAATTACCAGCGGCTCATGCGCTACAACGACAAGGACGGCTTCGAGGACGAGGACGTGTGGGACGCCGATACCGGCGCTCTCGAAGGCAAATA
CAAAGCCGTTCTCGGTGCGTCAACCGCTCAAACTGTCCGGCGAGCAAACACCGAAGCGTGGCGGTCGTTCTTTCGATTGAAAAAGCAGTTTCACGACGAG
TCAAACACGTCGGTTACGGAACACCCAGAACCGCCGGGCTTCCGTGGAAACAAAGACGACGGGCGCGTCCTCAAAGGCGTTGTCCGTAAGGACGCATACA
GCGTCGAATGGGGCGACCGCTCCCGACTCGAGATGGTCGTCGGAGAACAACTCCGAGACAGGCACAACAGCCCGAAAAGTCGCCTCCGGTTGGAAATTGT
TGGCGACCCGAACTGGTCTGACTACGAGGACCAAGGCCGACTAGAACTGTGGTACGACGAGACTGATTGCACCTTCCGAGCTTCGCAACCCGTGACTGTT
TCTGACGATGCACGGGCCACTCCACTGGCCAACGAGAAGGCCGCTCTAGACATTGGTGCAAACAACCTCGTCGCTTGTACCACCACAACCGGCCAGCAGT
ACCTGTATGAAGGCCGCGAGTTGTTTCAGCGATTCCGTGAGACGACACGAGAAATAGCCCGGTTGCAGTCCAAGCTACCGGAAGGCCGATACAGTAGCAA
GCGTATCCGGCGACTGTACCGGAAACGGACTCGTCGCCGCGACCACGCACAAGAGACACTGTGTCGTGACTTGCTCGAACAGCTGTACGGCGAGGGTGTG
GACACGGTGTATATCGGCGGGTTGACCGATGTACTCGAGACGCACTGGTCGGCTGAGACGAACGCCAAGACACACAACTTCTGGGCGTTCAAGCAATTCA
CCGAGCGACTGGCGTGGACCGCCGACGAATACGGCATCTCGGTCGAAGTGCGGTCAGAGGCATGGACCAGTCAGGAGTGCCCACAGTGCGGTTCGACAGA
CCGAACGACACGGCAGCAGGACACGCTCACCTGTCCGTGTGGATTCGAAGGGCACGCCGACGTTACGGCGTCAGAAACGTTCTTAGAGCGGCACACAGAG
AAAGCAGTCAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAATGGTCGGAGTCACCACGCTCTCCCGCGAGGGAAAGTCCCAAAGAAC
AGCGCACAGACCCGAGTACCGTCCCCCGTGACGGGAATGTTGTCTCCGGCGATTCTTAGACCGGCTGAGACTCCCACGGAGAAACCGCGCCATTCACGGC
GCGGAGGATGTCAT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
144 bp47 aa265122-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRPNIDISHTLGGRVKDYAEANDLDLSEAYTEVLEAGLEALETQDQP

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1353 bp450 aa3071659+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRANTFAMRPLTADDEQVLRDLLDASAALWNEINYQRLMRYNDKDGFEDEDVWDADTGALEGKYKAVLGASTAQTVRRANTEAWRSFFRLKKQFHDESN
TSVTEHPEPPGFRGNKDDGRVLKGVVRKDAYSVEWGDRSRLEMVVGEQLRDRHNSPKSRLRLEIVGDPNWSDYEDQGRLELWYDETDCTFRASQPVTVSD
DARATPLANEKAALDIGANNLVACTTTTGQQYLYEGRELFQRFRETTREIARLQSKLPEGRYSSKRIRRLYRKRTRRRDHAQETLCRDLLEQLYGEGVDT
VYIGGLTDVLETHWSAETNAKTHNFWAFKQFTERLAWTADEYGISVEVRSEAWTSQECPQCGSTDRTTRQQDTLTCPCGFEGHADVTASETFLERHTEKA
VRPMARPVRFEWDDHEWSESPRSPARESPKEQRTDPSTVPRDGNVVSGDS

 

Blast result :
Comments
ISNph27 is 89% aa similar to ISNamo22. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343