ISNph26
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1611 bp
Ends
Left end : ACGTAGCGAGCGGAAGCCCACCCCTTCAGGGGTGGGTCCGAGCGACAGCACAACCACACAATCCACGCGCTACGGTTCGTCTGGATGTTCCACCGCTTCC II struct. : Yes
Right end : AGTACCGATTCCCAAGACGGGAAACTTGCCTCCGTTGGTACGGCATAGCCAACATCCCCACCGGAGGAATCCCACGGCTGAAGCCGTGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CATCATGGGCGT | TGAC | ACCGACCATCTC | tcaa |
DNA sequence
ACGTAGCGAGCGGAAGCCCACCCCTTCAGGGGTGGGTCCGAGCGACAGCACAACCACACAATCCACGCGCTACGGTTCGTCTGGATGTTCCACCGCTTCC
AGACCGGCCTCTAACACTTCCGTATAGGCTTCCGATAAGTCTAATCCGTTCGCTTCTGCGTAGTCTTTGATTCGCCCGCCGAGCGTGTGCGAAATGTCGA
TGTTTGGTCGCATACGAAAAGACTTTAAGACTAAAAGTATAATAATCTGTTGTCATGAGGCGAACCAACACGTTCGCGGTACGCCCGCTCTCTGACGACG
ACGAGCGGCTACTGCTGGACCTGTTGGACGCCTCTGCGAGTCTGTGGAACGAGTTGAATTACGAGCGCCGCCAGCAATTCTTCGACGGCGAATCCGTGTG
GGATACCGCAGACTACCGGAAACAGTACGTCGGTGTTCTCGGTTCTGCGACCGCACAGCAGGTAATTCGGAAGAACAAATCGGCGTGGCAGTCATTTTTC
GCCGCCCGTGAGAACGGCGAGGACACCGCCCCGCCGGGCTACTGGGGTAACGAAGACGACGGCAGGGAACTCCGCACGTTCATCCGCCACGACCTCTACA
CGCTGGATACCGGCGAACGGTCACGAGTCGAGATACCAGTCGGCCAAGACCTCAAAGACGAGTACGGGCTTGGCTACCACGACCGTCTCCGCCTCGAAGT
TGCTGGCGACCCGAAATGGGACGGCGAACAGGGGCGTTTGGAGATACAGTACGGCGAGACTGACGACACGTTCAGGGCCTTTCAACCTGTCACCGTGCCT
GATTCTCGACAGGATTCACCACTGGCTTCCCACGAAGCCGCACTGGACGTGGGCGCAAACAATCTCGTCGCCTGTACCACCACAACCGGCGAGCAATACT
TGTACGAAGGCCGGGGCCTGTTCGCCCACTTCCGCGAGACAACGCGAGAAATCGCCCGTTTACAGTCGAAACTCCGAGAGGGCCGATACAGTAGTCAGCG
GATACGGCGGTTGTATCGCAAACGGACGCGACGGCGCGACCACGCACAGGATGCACTGGTTCGAGACCTGATGGAACGGCTCTACGCCGAAGGTGTCGAT
ACCGTGTACGTGGGCGACCTCACGGACGTTCTCTCGACGCATTGGTGCGCCGAGGTGAACGCAAAGACCCACCAGTTTTGGGCGTTCCGGGCGTTCATCG
AGCGCCTATCGCACACCGCTGAGGAATACGGCATCACCGTCGAGGTGCGGTCAGAAGCCGATACTACCCGGACGTGCCCGGCGTGTGGCGAACAGGACGA
TACCGACCGGGACGGCGATGTGTTCCGGTGTCCGTGCGGTCACGAAGCCCACGCCGACCTGTGCGCGTCTCGCACGTTCCTCGAACGACAGACTGGCAAA
CCCGTTGGGTCGATGGCACGGCCCGTGCGTCTCAAGTGGGACGACCACAACTGGTCGGAGATACCACACTCTCCCGAAAGGGCACGTCCCAACGAGAAGC
GCACAAACCAGAGTACCGATTCCCAAGACGGGAAACTTGCCTCCGTTGGTACGGCATAGCCAACATCCCCACCGGAGGAATCCCACGGCTGAAGCCGTGG
GAGGATGTCAA
AGACCGGCCTCTAACACTTCCGTATAGGCTTCCGATAAGTCTAATCCGTTCGCTTCTGCGTAGTCTTTGATTCGCCCGCCGAGCGTGTGCGAAATGTCGA
TGTTTGGTCGCATACGAAAAGACTTTAAGACTAAAAGTATAATAATCTGTTGTCATGAGGCGAACCAACACGTTCGCGGTACGCCCGCTCTCTGACGACG
ACGAGCGGCTACTGCTGGACCTGTTGGACGCCTCTGCGAGTCTGTGGAACGAGTTGAATTACGAGCGCCGCCAGCAATTCTTCGACGGCGAATCCGTGTG
GGATACCGCAGACTACCGGAAACAGTACGTCGGTGTTCTCGGTTCTGCGACCGCACAGCAGGTAATTCGGAAGAACAAATCGGCGTGGCAGTCATTTTTC
GCCGCCCGTGAGAACGGCGAGGACACCGCCCCGCCGGGCTACTGGGGTAACGAAGACGACGGCAGGGAACTCCGCACGTTCATCCGCCACGACCTCTACA
CGCTGGATACCGGCGAACGGTCACGAGTCGAGATACCAGTCGGCCAAGACCTCAAAGACGAGTACGGGCTTGGCTACCACGACCGTCTCCGCCTCGAAGT
TGCTGGCGACCCGAAATGGGACGGCGAACAGGGGCGTTTGGAGATACAGTACGGCGAGACTGACGACACGTTCAGGGCCTTTCAACCTGTCACCGTGCCT
GATTCTCGACAGGATTCACCACTGGCTTCCCACGAAGCCGCACTGGACGTGGGCGCAAACAATCTCGTCGCCTGTACCACCACAACCGGCGAGCAATACT
TGTACGAAGGCCGGGGCCTGTTCGCCCACTTCCGCGAGACAACGCGAGAAATCGCCCGTTTACAGTCGAAACTCCGAGAGGGCCGATACAGTAGTCAGCG
GATACGGCGGTTGTATCGCAAACGGACGCGACGGCGCGACCACGCACAGGATGCACTGGTTCGAGACCTGATGGAACGGCTCTACGCCGAAGGTGTCGAT
ACCGTGTACGTGGGCGACCTCACGGACGTTCTCTCGACGCATTGGTGCGCCGAGGTGAACGCAAAGACCCACCAGTTTTGGGCGTTCCGGGCGTTCATCG
AGCGCCTATCGCACACCGCTGAGGAATACGGCATCACCGTCGAGGTGCGGTCAGAAGCCGATACTACCCGGACGTGCCCGGCGTGTGGCGAACAGGACGA
TACCGACCGGGACGGCGATGTGTTCCGGTGTCCGTGCGGTCACGAAGCCCACGCCGACCTGTGCGCGTCTCGCACGTTCCTCGAACGACAGACTGGCAAA
CCCGTTGGGTCGATGGCACGGCCCGTGCGTCTCAAGTGGGACGACCACAACTGGTCGGAGATACCACACTCTCCCGAAAGGGCACGTCCCAACGAGAAGC
GCACAAACCAGAGTACCGATTCCCAAGACGGGAAACTTGCCTCCGTTGGTACGGCATAGCCAACATCCCCACCGGAGGAATCCCACGGCTGAAGCCGTGG
GAGGATGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
144 bp | 47 aa | 213 | 70 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRPNIDISHTLGGRIKDYAEANGLDLSEAYTEVLEAGLEAVEHPDEP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 255 | 1559 | + | No |
AG : TnpB
ORF sequence :
MRRTNTFAVRPLSDDDERLLLDLLDASASLWNELNYERRQQFFDGESVWDTADYRKQYVGVLGSATAQQVIRKNKSAWQSFFAARENGEDTAPPGYWGNE
DDGRELRTFIRHDLYTLDTGERSRVEIPVGQDLKDEYGLGYHDRLRLEVAGDPKWDGEQGRLEIQYGETDDTFRAFQPVTVPDSRQDSPLASHEAALDVG
ANNLVACTTTTGEQYLYEGRGLFAHFRETTREIARLQSKLREGRYSSQRIRRLYRKRTRRRDHAQDALVRDLMERLYAEGVDTVYVGDLTDVLSTHWCAE
VNAKTHQFWAFRAFIERLSHTAEEYGITVEVRSEADTTRTCPACGEQDDTDRDGDVFRCPCGHEAHADLCASRTFLERQTGKPVGSMARPVRLKWDDHNW
SEIPHSPERARPNEKRTNQSTDSQDGKLASVGTA
DDGRELRTFIRHDLYTLDTGERSRVEIPVGQDLKDEYGLGYHDRLRLEVAGDPKWDGEQGRLEIQYGETDDTFRAFQPVTVPDSRQDSPLASHEAALDVG
ANNLVACTTTTGEQYLYEGRGLFAHFRETTREIARLQSKLREGRYSSQRIRRLYRKRTRRRDHAQDALVRDLMERLYAEGVDTVYVGDLTDVLSTHWCAE
VNAKTHQFWAFRAFIERLSHTAEEYGITVEVRSEADTTRTCPACGEQDDTDRDGDVFRCPCGHEAHADLCASRTFLERQTGKPVGSMARPVRLKWDDHNW
SEIPHSPERARPNEKRTNQSTDSQDGKLASVGTA
Blast result :
Comments
ISNph26 is 90% (TnpB) aa similar to ISHbo2. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343