ISNph26

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1611 bp

Ends


Left end : ACGTAGCGAGCGGAAGCCCACCCCTTCAGGGGTGGGTCCGAGCGACAGCACAACCACACAATCCACGCGCTACGGTTCGTCTGGATGTTCCACCGCTTCC II struct. : Yes
Right end : AGTACCGATTCCCAAGACGGGAAACTTGCCTCCGTTGGTACGGCATAGCCAACATCCCCACCGGAGGAATCCCACGGCTGAAGCCGTGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CATCATGGGCGTTGACACCGACCATCTCtcaa

DNA sequence

ACGTAGCGAGCGGAAGCCCACCCCTTCAGGGGTGGGTCCGAGCGACAGCACAACCACACAATCCACGCGCTACGGTTCGTCTGGATGTTCCACCGCTTCC
AGACCGGCCTCTAACACTTCCGTATAGGCTTCCGATAAGTCTAATCCGTTCGCTTCTGCGTAGTCTTTGATTCGCCCGCCGAGCGTGTGCGAAATGTCGA
TGTTTGGTCGCATACGAAAAGACTTTAAGACTAAAAGTATAATAATCTGTTGTCATGAGGCGAACCAACACGTTCGCGGTACGCCCGCTCTCTGACGACG
ACGAGCGGCTACTGCTGGACCTGTTGGACGCCTCTGCGAGTCTGTGGAACGAGTTGAATTACGAGCGCCGCCAGCAATTCTTCGACGGCGAATCCGTGTG
GGATACCGCAGACTACCGGAAACAGTACGTCGGTGTTCTCGGTTCTGCGACCGCACAGCAGGTAATTCGGAAGAACAAATCGGCGTGGCAGTCATTTTTC
GCCGCCCGTGAGAACGGCGAGGACACCGCCCCGCCGGGCTACTGGGGTAACGAAGACGACGGCAGGGAACTCCGCACGTTCATCCGCCACGACCTCTACA
CGCTGGATACCGGCGAACGGTCACGAGTCGAGATACCAGTCGGCCAAGACCTCAAAGACGAGTACGGGCTTGGCTACCACGACCGTCTCCGCCTCGAAGT
TGCTGGCGACCCGAAATGGGACGGCGAACAGGGGCGTTTGGAGATACAGTACGGCGAGACTGACGACACGTTCAGGGCCTTTCAACCTGTCACCGTGCCT
GATTCTCGACAGGATTCACCACTGGCTTCCCACGAAGCCGCACTGGACGTGGGCGCAAACAATCTCGTCGCCTGTACCACCACAACCGGCGAGCAATACT
TGTACGAAGGCCGGGGCCTGTTCGCCCACTTCCGCGAGACAACGCGAGAAATCGCCCGTTTACAGTCGAAACTCCGAGAGGGCCGATACAGTAGTCAGCG
GATACGGCGGTTGTATCGCAAACGGACGCGACGGCGCGACCACGCACAGGATGCACTGGTTCGAGACCTGATGGAACGGCTCTACGCCGAAGGTGTCGAT
ACCGTGTACGTGGGCGACCTCACGGACGTTCTCTCGACGCATTGGTGCGCCGAGGTGAACGCAAAGACCCACCAGTTTTGGGCGTTCCGGGCGTTCATCG
AGCGCCTATCGCACACCGCTGAGGAATACGGCATCACCGTCGAGGTGCGGTCAGAAGCCGATACTACCCGGACGTGCCCGGCGTGTGGCGAACAGGACGA
TACCGACCGGGACGGCGATGTGTTCCGGTGTCCGTGCGGTCACGAAGCCCACGCCGACCTGTGCGCGTCTCGCACGTTCCTCGAACGACAGACTGGCAAA
CCCGTTGGGTCGATGGCACGGCCCGTGCGTCTCAAGTGGGACGACCACAACTGGTCGGAGATACCACACTCTCCCGAAAGGGCACGTCCCAACGAGAAGC
GCACAAACCAGAGTACCGATTCCCAAGACGGGAAACTTGCCTCCGTTGGTACGGCATAGCCAACATCCCCACCGGAGGAATCCCACGGCTGAAGCCGTGG
GAGGATGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
144 bp47 aa21370-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRPNIDISHTLGGRIKDYAEANGLDLSEAYTEVLEAGLEAVEHPDEP

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1305 bp434 aa2551559+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MRRTNTFAVRPLSDDDERLLLDLLDASASLWNELNYERRQQFFDGESVWDTADYRKQYVGVLGSATAQQVIRKNKSAWQSFFAARENGEDTAPPGYWGNE
DDGRELRTFIRHDLYTLDTGERSRVEIPVGQDLKDEYGLGYHDRLRLEVAGDPKWDGEQGRLEIQYGETDDTFRAFQPVTVPDSRQDSPLASHEAALDVG
ANNLVACTTTTGEQYLYEGRGLFAHFRETTREIARLQSKLREGRYSSQRIRRLYRKRTRRRDHAQDALVRDLMERLYAEGVDTVYVGDLTDVLSTHWCAE
VNAKTHQFWAFRAFIERLSHTAEEYGITVEVRSEADTTRTCPACGEQDDTDRDGDVFRCPCGHEAHADLCASRTFLERQTGKPVGSMARPVRLKWDDHNW
SEIPHSPERARPNEKRTNQSTDSQDGKLASVGTA

 

Blast result :
Comments
ISNph26 is 90% (TnpB) aa similar to ISHbo2. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343