ISNph25
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1437 bp
Ends
Left end : AGCGGATACAGCGCGGAAGCCCACCGGCTTTAGCCGTGGGAGGAAGCGCGTAAGCTCCATGCAACAATCCACCGACTACAACATTGCCGACTCCCTAACG II struct. : Yes
Right end : ACAATGACCGTGAACGCTACTGAAGTGGCGTCCGATACCTACGTATCGGCTGAACGGGAGTCCACCGACAAGCCAACGGCTTCAGCCGTTGGTAGCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGCGGGTCGGCC | TCAC | GCGTGGACAGCG | tgac |
DNA sequence
AGCGGATACAGCGCGGAAGCCCACCGGCTTTAGCCGTGGGAGGAAGCGCGTAAGCTCCATGCAACAATCCACCGACTACAACATTGCCGACTCCCTAACG
CTATCAAACATATTAATAAAGAGTAGCTACTGCTGTGACGTACATGGCGTGGGAGGTAACTCGAACGGTTCGCGTCCGTCTCGACGTACCTGACGACCGC
AAGAGTGACCTCCATGCCACCAACTCCAAATTCCAGTACTGCGCGAACCGTACCGCAGACTGGGCGTGGCGCTACCCCGACGAGAGCTGCGTAACCAGCA
AGAGCGAAGCCGAAGCCGCCATCTACGACGACCTTCGTGAAGAAACAGACTACCTACACGCGAACCTTGTCCAGAAGGCCATCAAACGCGCCACCGACGA
CATTGGCAACTGCGTTGACCGGCTTGCAGACGGTGAGAACACCAGCAAGCCACATTACGATACGTTCAGCATCGTCTACGACAAGCGAGCGGCCACTTAC
TACCGTGACAAAGTGAGTCTCGCCACAGTCAACGGGAGGGTCGAATGCGAATACGACCTCTCCGACGACCCAGACGGCACACCACACGGCGAATACCTGC
TGAACGACGATTATTCCTTTTCGACCAGCACCGTCCACTACGACTCAGAAACCGACGAGTTCTACCTACACGCCGCGATGGAACGGAAACTCGACGTGAG
CAGTCCTGAGAAAGCCGAGCATTCGAGAGTGCTTGGCGTGGACTGCAACGTTGATGACCACATTGCCGTGACCTCGACGGGTGCGTTCGTCGGGAACGCC
GACTACCTTAACCATCAACGCCGAGAGTTCGAGAAGCGACGTGCCAGCCTCCAACAGACGGGGACACGGAGCGCCCATCTGACCTTCCAGCGCATTGGCG
ACACGTTCGGACGCTGGAGCGAAGACTATCTGCACCAGTGTTCCAAAGAAATCGTTGCCGAAGCCAAGCGCCACGGTTGTACGCACATCGCCTTCGAGAA
CTTGGAGCAGATTCGAGCGCGTATCAGCGACGACAAAAAATTCCAACAATGGGCGTTTCGCGCACTCCAAGAACAAACCGAACACAAGGCAGAAATGGCT
GGTATCGTCGTCAAAACAGTCGAACCATCCTACACCAGCCAGCAATGCTCGAAGTGTGGCTGTACGCTCGAAGAGAATCGTGACGGTCAACAGTTCCAGT
GTCTCGACTGTTCGTACACGGCAAACGCCGACTACAACGCAGCAAAAAACATCGCTCGGAAACTCGCACTCAAACTCCAGCGAGGGCAGAAGTCCCCCGC
TGGAGGGGCGTTCTGTCAGTACGCCCTGAAGTCGGGGACAATGACCGTGAACGCTACTGAAGTGGCGTCCGATACCTACGTATCGGCTGAACGGGAGTCC
ACCGACAAGCCAACGGCTTCAGCCGTTGGTAGCTGAC
CTATCAAACATATTAATAAAGAGTAGCTACTGCTGTGACGTACATGGCGTGGGAGGTAACTCGAACGGTTCGCGTCCGTCTCGACGTACCTGACGACCGC
AAGAGTGACCTCCATGCCACCAACTCCAAATTCCAGTACTGCGCGAACCGTACCGCAGACTGGGCGTGGCGCTACCCCGACGAGAGCTGCGTAACCAGCA
AGAGCGAAGCCGAAGCCGCCATCTACGACGACCTTCGTGAAGAAACAGACTACCTACACGCGAACCTTGTCCAGAAGGCCATCAAACGCGCCACCGACGA
CATTGGCAACTGCGTTGACCGGCTTGCAGACGGTGAGAACACCAGCAAGCCACATTACGATACGTTCAGCATCGTCTACGACAAGCGAGCGGCCACTTAC
TACCGTGACAAAGTGAGTCTCGCCACAGTCAACGGGAGGGTCGAATGCGAATACGACCTCTCCGACGACCCAGACGGCACACCACACGGCGAATACCTGC
TGAACGACGATTATTCCTTTTCGACCAGCACCGTCCACTACGACTCAGAAACCGACGAGTTCTACCTACACGCCGCGATGGAACGGAAACTCGACGTGAG
CAGTCCTGAGAAAGCCGAGCATTCGAGAGTGCTTGGCGTGGACTGCAACGTTGATGACCACATTGCCGTGACCTCGACGGGTGCGTTCGTCGGGAACGCC
GACTACCTTAACCATCAACGCCGAGAGTTCGAGAAGCGACGTGCCAGCCTCCAACAGACGGGGACACGGAGCGCCCATCTGACCTTCCAGCGCATTGGCG
ACACGTTCGGACGCTGGAGCGAAGACTATCTGCACCAGTGTTCCAAAGAAATCGTTGCCGAAGCCAAGCGCCACGGTTGTACGCACATCGCCTTCGAGAA
CTTGGAGCAGATTCGAGCGCGTATCAGCGACGACAAAAAATTCCAACAATGGGCGTTTCGCGCACTCCAAGAACAAACCGAACACAAGGCAGAAATGGCT
GGTATCGTCGTCAAAACAGTCGAACCATCCTACACCAGCCAGCAATGCTCGAAGTGTGGCTGTACGCTCGAAGAGAATCGTGACGGTCAACAGTTCCAGT
GTCTCGACTGTTCGTACACGGCAAACGCCGACTACAACGCAGCAAAAAACATCGCTCGGAAACTCGCACTCAAACTCCAGCGAGGGCAGAAGTCCCCCGC
TGGAGGGGCGTTCTGTCAGTACGCCCTGAAGTCGGGGACAATGACCGTGAACGCTACTGAAGTGGCGTCCGATACCTACGTATCGGCTGAACGGGAGTCC
ACCGACAAGCCAACGGCTTCAGCCGTTGGTAGCTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1293 bp | 430 aa | 144 | 1436 | + | No |
AG : TnpB
ORF sequence :
MAWEVTRTVRVRLDVPDDRKSDLHATNSKFQYCANRTADWAWRYPDESCVTSKSEAEAAIYDDLREETDYLHANLVQKAIKRATDDIGNCVDRLADGENT
SKPHYDTFSIVYDKRAATYYRDKVSLATVNGRVECEYDLSDDPDGTPHGEYLLNDDYSFSTSTVHYDSETDEFYLHAAMERKLDVSSPEKAEHSRVLGVD
CNVDDHIAVTSTGAFVGNADYLNHQRREFEKRRASLQQTGTRSAHLTFQRIGDTFGRWSEDYLHQCSKEIVAEAKRHGCTHIAFENLEQIRARISDDKKF
QQWAFRALQEQTEHKAEMAGIVVKTVEPSYTSQQCSKCGCTLEENRDGQQFQCLDCSYTANADYNAAKNIARKLALKLQRGQKSPAGGAFCQYALKSGTM
TVNATEVASDTYVSAERESTDKPTASAVGS
SKPHYDTFSIVYDKRAATYYRDKVSLATVNGRVECEYDLSDDPDGTPHGEYLLNDDYSFSTSTVHYDSETDEFYLHAAMERKLDVSSPEKAEHSRVLGVD
CNVDDHIAVTSTGAFVGNADYLNHQRREFEKRRASLQQTGTRSAHLTFQRIGDTFGRWSEDYLHQCSKEIVAEAKRHGCTHIAFENLEQIRARISDDKKF
QQWAFRALQEQTEHKAEMAGIVVKTVEPSYTSQQCSKCGCTLEENRDGQQFQCLDCSYTANADYNAAKNIARKLALKLQRGQKSPAGGAFCQYALKSGTM
TVNATEVASDTYVSAERESTDKPTASAVGS
Blast result :
Comments
ISNph25 is 90% (TnpB) aa similar to ISHtu5.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343