ISNph25

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1437 bp

Ends


Left end : AGCGGATACAGCGCGGAAGCCCACCGGCTTTAGCCGTGGGAGGAAGCGCGTAAGCTCCATGCAACAATCCACCGACTACAACATTGCCGACTCCCTAACG II struct. : Yes
Right end : ACAATGACCGTGAACGCTACTGAAGTGGCGTCCGATACCTACGTATCGGCTGAACGGGAGTCCACCGACAAGCCAACGGCTTCAGCCGTTGGTAGCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGCGGGTCGGCCTCACGCGTGGACAGCGtgac

DNA sequence

AGCGGATACAGCGCGGAAGCCCACCGGCTTTAGCCGTGGGAGGAAGCGCGTAAGCTCCATGCAACAATCCACCGACTACAACATTGCCGACTCCCTAACG
CTATCAAACATATTAATAAAGAGTAGCTACTGCTGTGACGTACATGGCGTGGGAGGTAACTCGAACGGTTCGCGTCCGTCTCGACGTACCTGACGACCGC
AAGAGTGACCTCCATGCCACCAACTCCAAATTCCAGTACTGCGCGAACCGTACCGCAGACTGGGCGTGGCGCTACCCCGACGAGAGCTGCGTAACCAGCA
AGAGCGAAGCCGAAGCCGCCATCTACGACGACCTTCGTGAAGAAACAGACTACCTACACGCGAACCTTGTCCAGAAGGCCATCAAACGCGCCACCGACGA
CATTGGCAACTGCGTTGACCGGCTTGCAGACGGTGAGAACACCAGCAAGCCACATTACGATACGTTCAGCATCGTCTACGACAAGCGAGCGGCCACTTAC
TACCGTGACAAAGTGAGTCTCGCCACAGTCAACGGGAGGGTCGAATGCGAATACGACCTCTCCGACGACCCAGACGGCACACCACACGGCGAATACCTGC
TGAACGACGATTATTCCTTTTCGACCAGCACCGTCCACTACGACTCAGAAACCGACGAGTTCTACCTACACGCCGCGATGGAACGGAAACTCGACGTGAG
CAGTCCTGAGAAAGCCGAGCATTCGAGAGTGCTTGGCGTGGACTGCAACGTTGATGACCACATTGCCGTGACCTCGACGGGTGCGTTCGTCGGGAACGCC
GACTACCTTAACCATCAACGCCGAGAGTTCGAGAAGCGACGTGCCAGCCTCCAACAGACGGGGACACGGAGCGCCCATCTGACCTTCCAGCGCATTGGCG
ACACGTTCGGACGCTGGAGCGAAGACTATCTGCACCAGTGTTCCAAAGAAATCGTTGCCGAAGCCAAGCGCCACGGTTGTACGCACATCGCCTTCGAGAA
CTTGGAGCAGATTCGAGCGCGTATCAGCGACGACAAAAAATTCCAACAATGGGCGTTTCGCGCACTCCAAGAACAAACCGAACACAAGGCAGAAATGGCT
GGTATCGTCGTCAAAACAGTCGAACCATCCTACACCAGCCAGCAATGCTCGAAGTGTGGCTGTACGCTCGAAGAGAATCGTGACGGTCAACAGTTCCAGT
GTCTCGACTGTTCGTACACGGCAAACGCCGACTACAACGCAGCAAAAAACATCGCTCGGAAACTCGCACTCAAACTCCAGCGAGGGCAGAAGTCCCCCGC
TGGAGGGGCGTTCTGTCAGTACGCCCTGAAGTCGGGGACAATGACCGTGAACGCTACTGAAGTGGCGTCCGATACCTACGTATCGGCTGAACGGGAGTCC
ACCGACAAGCCAACGGCTTCAGCCGTTGGTAGCTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1293 bp430 aa1441436+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAWEVTRTVRVRLDVPDDRKSDLHATNSKFQYCANRTADWAWRYPDESCVTSKSEAEAAIYDDLREETDYLHANLVQKAIKRATDDIGNCVDRLADGENT
SKPHYDTFSIVYDKRAATYYRDKVSLATVNGRVECEYDLSDDPDGTPHGEYLLNDDYSFSTSTVHYDSETDEFYLHAAMERKLDVSSPEKAEHSRVLGVD
CNVDDHIAVTSTGAFVGNADYLNHQRREFEKRRASLQQTGTRSAHLTFQRIGDTFGRWSEDYLHQCSKEIVAEAKRHGCTHIAFENLEQIRARISDDKKF
QQWAFRALQEQTEHKAEMAGIVVKTVEPSYTSQQCSKCGCTLEENRDGQQFQCLDCSYTANADYNAAKNIARKLALKLQRGQKSPAGGAFCQYALKSGTM
TVNATEVASDTYVSAERESTDKPTASAVGS

 

Blast result :
Comments
ISNph25 is 90% (TnpB) aa similar to ISHtu5.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343