ISNph24
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1451 bp
Ends
Left end : AGTGTTGCGAGGCGAAAGCCCACGGCTTCAGCCGTGGGATGAAGCCGACAACAGGGAAACGTTCCACGCTCGGGCGCTCGGCTGGATATTCCAGCGTGCT II struct. : Yes
Right end : ACGCTGGCCACGCGAAAGCGTATTTGAGCCGCCGAGGAAACGCGCAACCCTAATATCCCCATCGGGGAATCCCACGGCTTCAGCCGTGGGAGGAGGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TATCGTCTATCA | TTAC | ATTCTAACTAAT | tcaa |
DNA sequence
AGTGTTGCGAGGCGAAAGCCCACGGCTTCAGCCGTGGGATGAAGCCGACAACAGGGAAACGTTCCACGCTCGGGCGCTCGGCTGGATATTCCAGCGTGCT
GAACCATCAACTTTTACAAATCTGCAACAGTACGTTACACGTGTAATGGTCGAGGTGAGTGTGGAAACCACGTTCCGCAATCCCAGCCGCTCGCGCCGCC
AAGAGTGGCAACGAGCCACCCACATCCTCCGCGAGTGCAAACAATGGCTCGTGGACGGCTGGGAGGACGACTCGCTCGCCTCGTCCGTGACGACTGGCGA
CATCGACAACCCACTCTACTCAGCACTCCAAAACCAAGCCATCCGAAACGCGAAAAGCGACTACGCCGACGAATCTATCGAGTACACGGGCGAACAGCCC
ATCGAGGTCAACAACCAGAACTGGGAAATCCACACGACTGAGAACGATTCTGTCGTCATCGGATTCCCGTGTATCAGTGATTGGTGGTACACGCCAATCC
ACGTCCACGAAAGTATTGAAGAACCCGTCCAAGCTCTGCTCGATGGTGACGCTGAGAAGACAAAACTCAGCGTGTGGCGAGAAGGCGGCGACTGGCATTG
CTCGTTCACAGTCGAATACGACGAGCAACAGGATGGCGAGGAAACACCCATTGGTGTTGACGTTGGTCACAACTACATTCTCGCGGCCACGCCAGACAAT
GCGAGTGCTGAGTCGTTCCTTGTGAGTGGCAAGGAACACAAGTTTGTGCGGCGGTACTACCGTTCCCTGCGTGACTCTCTACAGGAAACTGGGGCGCATC
GCGCCCGAACTCGCGTGGGTAACAAGGAGTATCGTCGCATCCAAGACATGAACCACACCCTCTCCAAACGACTCGTCGAATATGCCAGTCAGTTCGAGAA
TCCCGTTATCAAACTCGAAGACCTCGAAAACATCCGTGACGGTAGCGAGTGGAATGGCGTCCACTCGTGGCCGTTCTACGAACTCCAACAGTTCATCACG
TACAAAGCCGAGAAAGAAGGCGTTTGCGTCGAGAAAGTAGACCCCGAGAATACGAGTCAGGAGTGCAGTCAGTGCGATGAACTCGTGGGTCGTGACGGGA
GCAAGTTCGAGTGCCCGCACTGTGGGTATGTGCGGCACGCGGATTTGAACGCAGCTGAAAACATCAGTCAACGGGAGGGTGACCCATGCACGGCGTAACA
CTTCGGGTGACGCGAACCGTGCGGCCCAGCAGGATGAACAACCTGCCGACCACATCGTGGTCGCCTGCCACGTGCAGGTGGGAAGGCTCGTTTGACCGAG
CTATACGCGCTGGAAAGCACGCCCTTGGTCATAACTGGGCGGCGACCGTTGACGCTGGCCACGCGAAAGCGTATTTGAGCCGCCGAGGAAACGCGCAACC
CTAATATCCCCATCGGGGAATCCCACGGCTTCAGCCGTGGGAGGAGGTCAA
GAACCATCAACTTTTACAAATCTGCAACAGTACGTTACACGTGTAATGGTCGAGGTGAGTGTGGAAACCACGTTCCGCAATCCCAGCCGCTCGCGCCGCC
AAGAGTGGCAACGAGCCACCCACATCCTCCGCGAGTGCAAACAATGGCTCGTGGACGGCTGGGAGGACGACTCGCTCGCCTCGTCCGTGACGACTGGCGA
CATCGACAACCCACTCTACTCAGCACTCCAAAACCAAGCCATCCGAAACGCGAAAAGCGACTACGCCGACGAATCTATCGAGTACACGGGCGAACAGCCC
ATCGAGGTCAACAACCAGAACTGGGAAATCCACACGACTGAGAACGATTCTGTCGTCATCGGATTCCCGTGTATCAGTGATTGGTGGTACACGCCAATCC
ACGTCCACGAAAGTATTGAAGAACCCGTCCAAGCTCTGCTCGATGGTGACGCTGAGAAGACAAAACTCAGCGTGTGGCGAGAAGGCGGCGACTGGCATTG
CTCGTTCACAGTCGAATACGACGAGCAACAGGATGGCGAGGAAACACCCATTGGTGTTGACGTTGGTCACAACTACATTCTCGCGGCCACGCCAGACAAT
GCGAGTGCTGAGTCGTTCCTTGTGAGTGGCAAGGAACACAAGTTTGTGCGGCGGTACTACCGTTCCCTGCGTGACTCTCTACAGGAAACTGGGGCGCATC
GCGCCCGAACTCGCGTGGGTAACAAGGAGTATCGTCGCATCCAAGACATGAACCACACCCTCTCCAAACGACTCGTCGAATATGCCAGTCAGTTCGAGAA
TCCCGTTATCAAACTCGAAGACCTCGAAAACATCCGTGACGGTAGCGAGTGGAATGGCGTCCACTCGTGGCCGTTCTACGAACTCCAACAGTTCATCACG
TACAAAGCCGAGAAAGAAGGCGTTTGCGTCGAGAAAGTAGACCCCGAGAATACGAGTCAGGAGTGCAGTCAGTGCGATGAACTCGTGGGTCGTGACGGGA
GCAAGTTCGAGTGCCCGCACTGTGGGTATGTGCGGCACGCGGATTTGAACGCAGCTGAAAACATCAGTCAACGGGAGGGTGACCCATGCACGGCGTAACA
CTTCGGGTGACGCGAACCGTGCGGCCCAGCAGGATGAACAACCTGCCGACCACATCGTGGTCGCCTGCCACGTGCAGGTGGGAAGGCTCGTTTGACCGAG
CTATACGCGCTGGAAAGCACGCCCTTGGTCATAACTGGGCGGCGACCGTTGACGCTGGCCACGCGAAAGCGTATTTGAGCCGCCGAGGAAACGCGCAACC
CTAATATCCCCATCGGGGAATCCCACGGCTTCAGCCGTGGGAGGAGGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1053 bp | 350 aa | 146 | 1198 | + | No |
AG : TnpB
ORF sequence :
MVEVSVETTFRNPSRSRRQEWQRATHILRECKQWLVDGWEDDSLASSVTTGDIDNPLYSALQNQAIRNAKSDYADESIEYTGEQPIEVNNQNWEIHTTEN
DSVVIGFPCISDWWYTPIHVHESIEEPVQALLDGDAEKTKLSVWREGGDWHCSFTVEYDEQQDGEETPIGVDVGHNYILAATPDNASAESFLVSGKEHKF
VRRYYRSLRDSLQETGAHRARTRVGNKEYRRIQDMNHTLSKRLVEYASQFENPVIKLEDLENIRDGSEWNGVHSWPFYELQQFITYKAEKEGVCVEKVDP
ENTSQECSQCDELVGRDGSKFECPHCGYVRHADLNAAENISQREGDPCTA
DSVVIGFPCISDWWYTPIHVHESIEEPVQALLDGDAEKTKLSVWREGGDWHCSFTVEYDEQQDGEETPIGVDVGHNYILAATPDNASAESFLVSGKEHKF
VRRYYRSLRDSLQETGAHRARTRVGNKEYRRIQDMNHTLSKRLVEYASQFENPVIKLEDLENIRDGSEWNGVHSWPFYELQQFITYKAEKEGVCVEKVDP
ENTSQECSQCDELVGRDGSKFECPHCGYVRHADLNAAENISQREGDPCTA
Blast result :
Comments
ISNph24 is 74% (TnpB) aa similar to ISHbo7.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343