ISBrsa1

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Brenneria salicis
Brenneria salicis ATCC 15712
DNA section
IS Length : 1249 bp

Ends


IR Length : 20/26

IRL : TGTAGTGGAATACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACC
IRR : TGTAGTGGTCAACTAAAACTGGCCACGGGTTTAGAGTTTTTCCAGAATCG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTAGTGGAATACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTCCAATGAAAAAAAGAAATTTTAGTGCAGAGT
TCAAACGTGAAGCGGCTCAGTTGGTTGTCGATCAGAACTACACCGTTGCTGAAGCAGCAAAAGCCATGGATATTGGCCTTTCAACAATGACCCGATGGGT
CAGACAATTACGGGACGAACGGCAGGGAAAAACACCGAAAGCGTCTCCCATTACCCCGGAACAAATTGAAATACGTGAGTTGAAGAAAAAACTACAACGT
ATTGAAATGGAAAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGTTAATCGGAAAACTCAGGGCGCGTTATCC
CGTGGCTACACTCTGCCACGTATTTGGGGTTCACCGCAGCAGCTATAAATACTGGAAATGCCGTCCTGATAAACCGGACAGAAAGCATACAGAGTTACGC
AGTCAGGTTCAGGAACTATACAACATTAGTCATGGCTCAGCCGGGGCAAGGAGTATCGCCGCAATGGCAACGCTCAGAGGCTTCCGGATGGGGCGCTGGC
TTGCCGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGTCAGCAACCCACACACAGATATAAGCGTGGTGGACAGGTGCATGTTGCCATCCCGAATCA
CCTTGAGCGTCAGTTCGCTGTCACAGAACCAAATCAGGTGTGGTGCGGTGATGTGACATATGTCTGGACAGGAAAACGCTGGGCGTACCTCGCTGTCGTT
CTTGACCTGTTCGCCAGAAAACCGGTGGGCTGGGCAATGTCGTTCTCACCGGACAGCAGGCTGACCACTAAAGCGTTGGAAATGGCTTTTGAAAACCGGG
GCAGACCATCAAGGCTCATGTTCCACAGTGATCAGGGTAGCCATTATACAAGCAGGCAGTTCCGTCAGTTACTGTGGCGTTACCGGATAAAGCAGAGTAT
GAGTCGGCGCGGAAACTGCTGGGATAACAGTCCGATGGAACGCTTCTTCAGAAGTCTGAAAAATGAATGGGTGCCGGTAATGGGGTACGAGAACTTTAGC
GAAACAGCCCGATCTATAACGGACTATATCGTGGGATATTACAGCACGATCAGACCACACGACTATAACGGTGGATTACCCCCAAACGAATCGGAAAATC
GATTCTGGAAAAACTCTAAACCCGTGGCCAGTTTTAGTTGACCACTACA
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
303 bp100 aa73375+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MKKRNFSAEFKREAAQLVVDQNYTVAEAAKAMDIGLSTMTRWVRQLRDERQGKTPKASPITPEQIEIRELKKKLQRIEMENEILKKATALLMSDSLNSSR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
924 bp307 aa3181241+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

NIKKGYRALDVRLPEQFSLIGKLRARYPVATLCHVFGVHRSSYKYWKCRPDKPDRKHTELRSQVQELYNISHGSAGARSIAAMATLRGFRMGRWLAGRLM
KELGLVSCQQPTHRYKRGGQVHVAIPNHLERQFAVTEPNQVWCGDVTYVWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTTKALEMAFENRGRPSRL
MFHSDQGSHYTSRQFRQLLWRYRIKQSMSRRGNCWDNSPMERFFRSLKNEWVPVMGYENFSETARSITDYIVGYYSTIRPHDYNGGLPPNESENRFWKNS
KPVASFS

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1169 bp389 aa731241+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKRNFSAEFKREAAQLVVDQNYTVAEAAKAMDIGLSTMTRWVRQLRDERQGKTPKASPITPEQIEIRELKKKLQRIEMENEILKKGYRALDVRLPEQFS
LIGKLRARYPVATLCHVFGVHRSSYKYWKCRPDKPDRKHTELRSQVQELYNISHGSAGARSIAAMATLRGFRMGRWLAGRLMKELGLVSCQQPTHRYKRG
GQVHVAIPNHLERQFAVTEPNQVWCGDVTYVWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTTKALEMAFENRGRPSRLMFHSDQGSHYTSRQFRQL
LWRYRIKQSMSRRGNCWDNSPMERFFRSLKNEWVPVMGYENFSETARSITDYIVGYYSTIRPHDYNGGLPPNESENRFWKNSKPVASFS

 

Blast result :
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References