ISBrsa1
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Brenneria salicis | Brenneria salicis ATCC 15712 |
DNA section
IS Length : 1249 bp
Ends
IR Length : 20/26
IRL : TGTAGTGGAATACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACC
IRR : TGTAGTGGTCAACTAAAACTGGCCACGGGTTTAGAGTTTTTCCAGAATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTAGTGGAATACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCTCCAATGAAAAAAAGAAATTTTAGTGCAGAGT
TCAAACGTGAAGCGGCTCAGTTGGTTGTCGATCAGAACTACACCGTTGCTGAAGCAGCAAAAGCCATGGATATTGGCCTTTCAACAATGACCCGATGGGT
CAGACAATTACGGGACGAACGGCAGGGAAAAACACCGAAAGCGTCTCCCATTACCCCGGAACAAATTGAAATACGTGAGTTGAAGAAAAAACTACAACGT
ATTGAAATGGAAAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGTTAATCGGAAAACTCAGGGCGCGTTATCC
CGTGGCTACACTCTGCCACGTATTTGGGGTTCACCGCAGCAGCTATAAATACTGGAAATGCCGTCCTGATAAACCGGACAGAAAGCATACAGAGTTACGC
AGTCAGGTTCAGGAACTATACAACATTAGTCATGGCTCAGCCGGGGCAAGGAGTATCGCCGCAATGGCAACGCTCAGAGGCTTCCGGATGGGGCGCTGGC
TTGCCGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGTCAGCAACCCACACACAGATATAAGCGTGGTGGACAGGTGCATGTTGCCATCCCGAATCA
CCTTGAGCGTCAGTTCGCTGTCACAGAACCAAATCAGGTGTGGTGCGGTGATGTGACATATGTCTGGACAGGAAAACGCTGGGCGTACCTCGCTGTCGTT
CTTGACCTGTTCGCCAGAAAACCGGTGGGCTGGGCAATGTCGTTCTCACCGGACAGCAGGCTGACCACTAAAGCGTTGGAAATGGCTTTTGAAAACCGGG
GCAGACCATCAAGGCTCATGTTCCACAGTGATCAGGGTAGCCATTATACAAGCAGGCAGTTCCGTCAGTTACTGTGGCGTTACCGGATAAAGCAGAGTAT
GAGTCGGCGCGGAAACTGCTGGGATAACAGTCCGATGGAACGCTTCTTCAGAAGTCTGAAAAATGAATGGGTGCCGGTAATGGGGTACGAGAACTTTAGC
GAAACAGCCCGATCTATAACGGACTATATCGTGGGATATTACAGCACGATCAGACCACACGACTATAACGGTGGATTACCCCCAAACGAATCGGAAAATC
GATTCTGGAAAAACTCTAAACCCGTGGCCAGTTTTAGTTGACCACTACA
TCAAACGTGAAGCGGCTCAGTTGGTTGTCGATCAGAACTACACCGTTGCTGAAGCAGCAAAAGCCATGGATATTGGCCTTTCAACAATGACCCGATGGGT
CAGACAATTACGGGACGAACGGCAGGGAAAAACACCGAAAGCGTCTCCCATTACCCCGGAACAAATTGAAATACGTGAGTTGAAGAAAAAACTACAACGT
ATTGAAATGGAAAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGTTAATCGGAAAACTCAGGGCGCGTTATCC
CGTGGCTACACTCTGCCACGTATTTGGGGTTCACCGCAGCAGCTATAAATACTGGAAATGCCGTCCTGATAAACCGGACAGAAAGCATACAGAGTTACGC
AGTCAGGTTCAGGAACTATACAACATTAGTCATGGCTCAGCCGGGGCAAGGAGTATCGCCGCAATGGCAACGCTCAGAGGCTTCCGGATGGGGCGCTGGC
TTGCCGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGTCAGCAACCCACACACAGATATAAGCGTGGTGGACAGGTGCATGTTGCCATCCCGAATCA
CCTTGAGCGTCAGTTCGCTGTCACAGAACCAAATCAGGTGTGGTGCGGTGATGTGACATATGTCTGGACAGGAAAACGCTGGGCGTACCTCGCTGTCGTT
CTTGACCTGTTCGCCAGAAAACCGGTGGGCTGGGCAATGTCGTTCTCACCGGACAGCAGGCTGACCACTAAAGCGTTGGAAATGGCTTTTGAAAACCGGG
GCAGACCATCAAGGCTCATGTTCCACAGTGATCAGGGTAGCCATTATACAAGCAGGCAGTTCCGTCAGTTACTGTGGCGTTACCGGATAAAGCAGAGTAT
GAGTCGGCGCGGAAACTGCTGGGATAACAGTCCGATGGAACGCTTCTTCAGAAGTCTGAAAAATGAATGGGTGCCGGTAATGGGGTACGAGAACTTTAGC
GAAACAGCCCGATCTATAACGGACTATATCGTGGGATATTACAGCACGATCAGACCACACGACTATAACGGTGGATTACCCCCAAACGAATCGGAAAATC
GATTCTGGAAAAACTCTAAACCCGTGGCCAGTTTTAGTTGACCACTACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 73 | 375 | + | No |
Description : First part of the transposase
ORF sequence :
MKKRNFSAEFKREAAQLVVDQNYTVAEAAKAMDIGLSTMTRWVRQLRDERQGKTPKASPITPEQIEIRELKKKLQRIEMENEILKKATALLMSDSLNSSR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 318 | 1241 | + | No |
Description : Second part of the transposase
ORF sequence :
NIKKGYRALDVRLPEQFSLIGKLRARYPVATLCHVFGVHRSSYKYWKCRPDKPDRKHTELRSQVQELYNISHGSAGARSIAAMATLRGFRMGRWLAGRLM
KELGLVSCQQPTHRYKRGGQVHVAIPNHLERQFAVTEPNQVWCGDVTYVWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTTKALEMAFENRGRPSRL
MFHSDQGSHYTSRQFRQLLWRYRIKQSMSRRGNCWDNSPMERFFRSLKNEWVPVMGYENFSETARSITDYIVGYYSTIRPHDYNGGLPPNESENRFWKNS
KPVASFS
KELGLVSCQQPTHRYKRGGQVHVAIPNHLERQFAVTEPNQVWCGDVTYVWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTTKALEMAFENRGRPSRL
MFHSDQGSHYTSRQFRQLLWRYRIKQSMSRRGNCWDNSPMERFFRSLKNEWVPVMGYENFSETARSITDYIVGYYSTIRPHDYNGGLPPNESENRFWKNS
KPVASFS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1169 bp | 389 aa | 73 | 1241 | + | Yes |
Chemistry : DDE
ORF sequence :
MKKRNFSAEFKREAAQLVVDQNYTVAEAAKAMDIGLSTMTRWVRQLRDERQGKTPKASPITPEQIEIRELKKKLQRIEMENEILKKGYRALDVRLPEQFS
LIGKLRARYPVATLCHVFGVHRSSYKYWKCRPDKPDRKHTELRSQVQELYNISHGSAGARSIAAMATLRGFRMGRWLAGRLMKELGLVSCQQPTHRYKRG
GQVHVAIPNHLERQFAVTEPNQVWCGDVTYVWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTTKALEMAFENRGRPSRLMFHSDQGSHYTSRQFRQL
LWRYRIKQSMSRRGNCWDNSPMERFFRSLKNEWVPVMGYENFSETARSITDYIVGYYSTIRPHDYNGGLPPNESENRFWKNSKPVASFS
LIGKLRARYPVATLCHVFGVHRSSYKYWKCRPDKPDRKHTELRSQVQELYNISHGSAGARSIAAMATLRGFRMGRWLAGRLMKELGLVSCQQPTHRYKRG
GQVHVAIPNHLERQFAVTEPNQVWCGDVTYVWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTTKALEMAFENRGRPSRLMFHSDQGSHYTSRQFRQL
LWRYRIKQSMSRRGNCWDNSPMERFFRSLKNEWVPVMGYENFSETARSITDYIVGYYSTIRPHDYNGGLPPNESENRFWKNSKPVASFS
Blast result :
Comments
References