ISHti8
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| HF571520 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B |
DNA section
IS Length : 1063 bp
Ends
IR Length : 20/24
IRL : GAGCGTGTCATAGAAATATTCTCAGGGAAGGCAGCAGGGTGTTGGAACTG
IRR : GAGCGTGTCATAGAATCCATCTCATAACTTCTCACAGCCCGGTCCGTTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCGTTTTGGC | TCCGAG | AGCAACATGG | 6 |
| TGAGTGTAAT | TAGTATGCTA | 0 |
DNA sequence
GAGCGTGTCATAGAAATATTCTCAGGGAAGGCAGCAGGGTGTTGGAACTGTGTCTACGAGCGCCAGCACCCTGCAAGACGTAACTTCGGTAGACGACTTC
TTGAATGCGGCGGCTACCGAGACAGTACCGCTGTTCGAGCATCTTGAGTTCGAGTTTCTGCTGGAGTATGACGTGTTCGCCCCCTCGAAGCGGGGGCGAA
CACGAGTGCATCAGCCACCAGACCTCTTTCGCGGCTTTCTGCACTGCTACTACAAGGATGTCTACGGGACACGCCCGGTTGCACGAGAACTTCAGCACGG
CCTCGTCTGGTACTATTGCGGACTCGACAAACCGCCATCAAGAGACACGGTTGATCGCTTTCTCACTGATCTCGAACACGTTATCGACGATGTCTTCGAC
AGTCTCGTCGAGCAGGCCGCCGCCCGCGGCCTGCTCGACTCCACGTACTCTATCGATTCGACACACGTTGAAGCGATTCAATACAACGATGCAGCGTCAT
GGAACTACGATCCAACGGCTGAGGAGTACTACTACGGCTTCGGCTGTACGATCGTCTCGACCGGCGCAAAGATCCCGATAGCAGCGGAGTTCACACAGGC
CAAACAAGCAAACAAAGAGACGGCGATGCGCGTCACCCGTGACGCGCTCGCCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTACGACATCCTC
GATTGGCACGACCTCCTGCTGGCCGCAGGGGTCGTGCCAATCGCTCCGTACAATCCGCGAAACACCGACGACCCGAAAGACATCAAGTACAGAGTCGAAG
ACCGCATCAAGAAACATAGCGAGGACATCCGGCTGAAACAGTCCATCCTAGATGAGACGTACAACGACCGGACAGGAGTCGAACGAACCAACGATGCAGT
CAAGGACTGCGGCCTCGGGCACGTCTGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTATTTCTTGCGCTGTGTCTCCGGATCGTCGTCGCCATCACC
AACTACGAGCGAGGAAACGGACCGGGCTGTGAGAAGTTATGAGATGGATTCTATGACACGCTC
TTGAATGCGGCGGCTACCGAGACAGTACCGCTGTTCGAGCATCTTGAGTTCGAGTTTCTGCTGGAGTATGACGTGTTCGCCCCCTCGAAGCGGGGGCGAA
CACGAGTGCATCAGCCACCAGACCTCTTTCGCGGCTTTCTGCACTGCTACTACAAGGATGTCTACGGGACACGCCCGGTTGCACGAGAACTTCAGCACGG
CCTCGTCTGGTACTATTGCGGACTCGACAAACCGCCATCAAGAGACACGGTTGATCGCTTTCTCACTGATCTCGAACACGTTATCGACGATGTCTTCGAC
AGTCTCGTCGAGCAGGCCGCCGCCCGCGGCCTGCTCGACTCCACGTACTCTATCGATTCGACACACGTTGAAGCGATTCAATACAACGATGCAGCGTCAT
GGAACTACGATCCAACGGCTGAGGAGTACTACTACGGCTTCGGCTGTACGATCGTCTCGACCGGCGCAAAGATCCCGATAGCAGCGGAGTTCACACAGGC
CAAACAAGCAAACAAAGAGACGGCGATGCGCGTCACCCGTGACGCGCTCGCCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTACGACATCCTC
GATTGGCACGACCTCCTGCTGGCCGCAGGGGTCGTGCCAATCGCTCCGTACAATCCGCGAAACACCGACGACCCGAAAGACATCAAGTACAGAGTCGAAG
ACCGCATCAAGAAACATAGCGAGGACATCCGGCTGAAACAGTCCATCCTAGATGAGACGTACAACGACCGGACAGGAGTCGAACGAACCAACGATGCAGT
CAAGGACTGCGGCCTCGGGCACGTCTGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTATTTCTTGCGCTGTGTCTCCGGATCGTCGTCGCCATCACC
AACTACGAGCGAGGAAACGGACCGGGCTGTGAGAAGTTATGAGATGGATTCTATGACACGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 993 bp | 330 aa | 50 | 1042 | + | No |
Chemistry : DDE
ORF sequence :
MSTSASTLQDVTSVDDFLNAAATETVPLFEHLEFEFLLEYDVFAPSKRGRTRVHQPPDLFRGFLHCYYKDVYGTRPVARELQHGLVWYYCGLDKPPSRDT
VDRFLTDLEHVIDDVFDSLVEQAAARGLLDSTYSIDSTHVEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQANKETAMRVTRDAL
AVDTPIWMLGDSAYDILDWHDLLLAAGVVPIAPYNPRNTDDPKDIKYRVEDRIKKHSEDIRLKQSILDETYNDRTGVERTNDAVKDCGLGHVCARGRVHA
RTEVFLALCLRIVVAITNYERGNGPGCEKL
VDRFLTDLEHVIDDVFDSLVEQAAARGLLDSTYSIDSTHVEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQANKETAMRVTRDAL
AVDTPIWMLGDSAYDILDWHDLLLAAGVVPIAPYNPRNTDDPKDIKYRVEDRIKKHSEDIRLKQSILDETYNDRTGVERTNDAVKDCGLGHVCARGRVHA
RTEVFLALCLRIVVAITNYERGNGPGCEKL
Blast result :
Comments
ISHti8 is 96% aa similar to ISNpe19.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)