ISHti7
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF571521 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B plasmid pHTIA |
DNA section
IS Length : 1063 bp
Ends
IR Length : 19/24
IRL : GAGCGTGTCATAGAAAGCCTCCCAAGGGAGGCCGCAGGGTTTGGAAACTG
IRR : GAGCGTGTCGTAGAATCCATCTCACAGCTTCTCACAGCCCGGGTTGTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAGTTGGAT | TATGTAGTTA | 0 |
DNA sequence
GAGCGTGTCATAGAAAGCCTCCCAAGGGAGGCCGCAGGGTTTGGAAACTGTGTCCAGCAGTACCAACGCCCTGCAAGACGTAGCTTCGGTAGACGACTTT
TTGAATGCAGCGGCTACCGAGACAGTACCGCTGTTCGAACACCTTGAGTTCGAGTTTCTTCTGGAGTACGACGTGTTCGCCCCCTCAAAGCGGGGGCGAA
CACGAGTGCATCAGCCACCAGATCTCTTCCGCGGCTTTCTCCACTGCTACTACGAAAACGTCTACGGCACACGCCCGGTGACGAGAGAGCTCAAGCACAA
CCTCGTCTGGTACTACTGTGGACTCGACAAACCGCCATCCAGAGACACGATTGATCGCTTTCTCACCGACCTCGAACACGTTATTGACGATATCTTTGAC
AGGCTTGTCAAGCAGGCCGCCGCCTGCGGCCTGCTCGACTCCACGTACTCCATCGATTCGACCCACATCGAAGCGATCCAGTACAACGACGCAGCATCGT
GGAACTACGACCCAACAGCCGAGGAGTACTACTACGGCTTCGGCTGTACAATCGTCTCAACCGGCGCAAAAATCCCGATAGCAGCGGAATTCACACAAGC
GAAACAAGCGGATCAGGAGACGGCGATGCGCGTCATACGTGACGCGCTCACCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTATGATATCCTC
GATTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAATCGCGCCGTACAATCCGCGAAACACTGACGATCCGAAAGATATCGAGTACAGGGTCGAAG
ACCGCATTACCGAACACAGCGAGGACGTTCAGCTGAAACAATCCATCTTGGACGAGACGTACAACAAACGGACAGGAGTCGAACGAACCAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTCCTTGCACTCTGCCTACGGCTCGCCGTTGCCATCACC
AACTACGAGCGAGGAAACAACCCGGGCTGTGAGAAGCTGTGAGATGGATTCTACGACACGCTC
TTGAATGCAGCGGCTACCGAGACAGTACCGCTGTTCGAACACCTTGAGTTCGAGTTTCTTCTGGAGTACGACGTGTTCGCCCCCTCAAAGCGGGGGCGAA
CACGAGTGCATCAGCCACCAGATCTCTTCCGCGGCTTTCTCCACTGCTACTACGAAAACGTCTACGGCACACGCCCGGTGACGAGAGAGCTCAAGCACAA
CCTCGTCTGGTACTACTGTGGACTCGACAAACCGCCATCCAGAGACACGATTGATCGCTTTCTCACCGACCTCGAACACGTTATTGACGATATCTTTGAC
AGGCTTGTCAAGCAGGCCGCCGCCTGCGGCCTGCTCGACTCCACGTACTCCATCGATTCGACCCACATCGAAGCGATCCAGTACAACGACGCAGCATCGT
GGAACTACGACCCAACAGCCGAGGAGTACTACTACGGCTTCGGCTGTACAATCGTCTCAACCGGCGCAAAAATCCCGATAGCAGCGGAATTCACACAAGC
GAAACAAGCGGATCAGGAGACGGCGATGCGCGTCATACGTGACGCGCTCACCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTATGATATCCTC
GATTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAATCGCGCCGTACAATCCGCGAAACACTGACGATCCGAAAGATATCGAGTACAGGGTCGAAG
ACCGCATTACCGAACACAGCGAGGACGTTCAGCTGAAACAATCCATCTTGGACGAGACGTACAACAAACGGACAGGAGTCGAACGAACCAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTCCTTGCACTCTGCCTACGGCTCGCCGTTGCCATCACC
AACTACGAGCGAGGAAACAACCCGGGCTGTGAGAAGCTGTGAGATGGATTCTACGACACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 330 aa | 50 | 1039 | + | No |
Chemistry : DDE
ORF sequence :
MSSSTNALQDVASVDDFLNAAATETVPLFEHLEFEFLLEYDVFAPSKRGRTRVHQPPDLFRGFLHCYYENVYGTRPVTRELKHNLVWYYCGLDKPPSRDT
IDRFLTDLEHVIDDIFDRLVKQAAACGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQADQETAMRVIRDAL
TVDTPIWMLGDSAYDILDWHDHLLAAGVVPIAPYNPRNTDDPKDIEYRVEDRITEHSEDVQLKQSILDETYNKRTGVERTNDAVKDCGLGHVRARGRVHA
RTEVFLALCLRLAVAITNYERGNNPGCEKL
IDRFLTDLEHVIDDIFDRLVKQAAACGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQADQETAMRVIRDAL
TVDTPIWMLGDSAYDILDWHDHLLAAGVVPIAPYNPRNTDDPKDIEYRVEDRITEHSEDVQLKQSILDETYNKRTGVERTNDAVKDCGLGHVRARGRVHA
RTEVFLALCLRLAVAITNYERGNNPGCEKL
Blast result :
Comments
ISHti7 is 95% aa similar to ISNpe19.
References
1] Pfeiffer F. (2015) Direct submission
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)