ISHth3
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halococcus thailandensis | Halococcus thailandensis |
DNA section
IS Length : 1472 bp
Ends
IR Length : 23/35
IRL : CTGTGGCGTTTCGACTATTTAAAACCGGCGTGAGCCGGTAGTGACGGCCT
IRR : CTGTTGCGTTCTGAGTTGATAAAGCCACGGCGAGCGAGATCTTTGTGAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGTTTTGATT | GCTCATAT | TGAAAGGAATCC | 8 |
DNA sequence
CTGTGGCGTTTCGACTATTTAAAACCGGCGTGAGCCGGTAGTGACGGCCTGATGTCTGTGACCTCTAAGTCGGCAGATAGGCCGTCACCGGATGCAACGG
ACGCCAACAACTTCAACTCTGCCGAAACTGTCGCCGATGAGTTGTACTCGCTGCTCGCCGCAGGCGACAGCGAGTCCATTGCTCAGGAGTTCGATATCGG
CATCCACACCGACAAACACGACTTCGACAACCACCTCAAAGTAGCCATTCGTGAAGGACTTGATCCATCTAGTTCGCTCGCCGAACTTGCCGATAAGACC
GCTGTTGATGACTCTCTTGACAAAATGCCCGAGTCACGGTTCTCCGAACTCACGAACGACCGCGACTACCGCGCGGTCGTTCGCATGCTGTTCGCGTTGC
TCCATACGCCACAGCTGTATCATCAGCGTGCTGTCCAGCGAAAACGCCTGAAGTGGCTTACACGAGGGGTAATTGCTGTCGACGCGACGAATCTCGAACT
CACTCGCTCAGTTGTCGTCTCCGACGAATTTGTCGGAGACGACGAGCACGTCTATGAAATCGACACAGACGACGGTGGACTCGAACTTCATTGCGCCGCA
CGCGTAGACGGTGAACACAAGCATCCGCTTGGAACAACCGTGACAGAGGGTGAAACCCACGAAAGTCCGCAGTTCGACCATCTCAGCGATGACGTCGAGG
TCTTCGCAGACCTCGACTCGGTTATTTGGGTCTTTGACCGCGGATACACGCGCTATCGTCGCTTTTGTGAGATCAAGTACAGCGACGATGACTTCGTCAC
CCTACTCCAGTCAAACGCCCGTCTCGACGTTCTGGACACGCTCCAGAACGTCGAGGTCACTAATGAGGACGGAACGAGACAGATTCGTGACGAGCAAATT
GAACTGGCCGAGACCGGTGAACAGTTTCGTCGTATCGTTTTGGAAACGCCGGATGGAGAAGAGCTTCAGTACCTGACGACGCTGGCGTCGTCAGCGTACG
ATCCCATCGACGTGATCAGTATCTACACCCTCCGGACAATGATCGAGATTCTATTTCGTGAATTCAAACAATATCTGAACGTTGAGAATTTCCACTCGAA
ATCACTGAACGGCGTGTTGTTTGAGTTGTTCTGTGCGTTGATTGGATACGTGCTTGTGGAGTGGCTGCGCCAACGCCACCCGGTCAAGGGTGGCGTGGCG
CGTGCGATCCAGAAAGTCCGGACGCACTGGAACGAGACGCTGACTTCGTTCGGCTAATCTCATCACACGAGGCCAGCGACAGCCGTCGGCAGCAGCGACG
GCTGTCGCCAAAATCGTGGTTTTCTTCGCCTTTTAGGCCTGTGACGACGCATATCTCGATTCTGCTTCCATTTTCTCGCATCAGGCTGAACTTGCGCAGC
CCACACACCTCGGTCCGGTACCTCTCACAAAGATCTCGCTCGCCGTGGCTTTATCAACTCAGAACGCAACAG
ACGCCAACAACTTCAACTCTGCCGAAACTGTCGCCGATGAGTTGTACTCGCTGCTCGCCGCAGGCGACAGCGAGTCCATTGCTCAGGAGTTCGATATCGG
CATCCACACCGACAAACACGACTTCGACAACCACCTCAAAGTAGCCATTCGTGAAGGACTTGATCCATCTAGTTCGCTCGCCGAACTTGCCGATAAGACC
GCTGTTGATGACTCTCTTGACAAAATGCCCGAGTCACGGTTCTCCGAACTCACGAACGACCGCGACTACCGCGCGGTCGTTCGCATGCTGTTCGCGTTGC
TCCATACGCCACAGCTGTATCATCAGCGTGCTGTCCAGCGAAAACGCCTGAAGTGGCTTACACGAGGGGTAATTGCTGTCGACGCGACGAATCTCGAACT
CACTCGCTCAGTTGTCGTCTCCGACGAATTTGTCGGAGACGACGAGCACGTCTATGAAATCGACACAGACGACGGTGGACTCGAACTTCATTGCGCCGCA
CGCGTAGACGGTGAACACAAGCATCCGCTTGGAACAACCGTGACAGAGGGTGAAACCCACGAAAGTCCGCAGTTCGACCATCTCAGCGATGACGTCGAGG
TCTTCGCAGACCTCGACTCGGTTATTTGGGTCTTTGACCGCGGATACACGCGCTATCGTCGCTTTTGTGAGATCAAGTACAGCGACGATGACTTCGTCAC
CCTACTCCAGTCAAACGCCCGTCTCGACGTTCTGGACACGCTCCAGAACGTCGAGGTCACTAATGAGGACGGAACGAGACAGATTCGTGACGAGCAAATT
GAACTGGCCGAGACCGGTGAACAGTTTCGTCGTATCGTTTTGGAAACGCCGGATGGAGAAGAGCTTCAGTACCTGACGACGCTGGCGTCGTCAGCGTACG
ATCCCATCGACGTGATCAGTATCTACACCCTCCGGACAATGATCGAGATTCTATTTCGTGAATTCAAACAATATCTGAACGTTGAGAATTTCCACTCGAA
ATCACTGAACGGCGTGTTGTTTGAGTTGTTCTGTGCGTTGATTGGATACGTGCTTGTGGAGTGGCTGCGCCAACGCCACCCGGTCAAGGGTGGCGTGGCG
CGTGCGATCCAGAAAGTCCGGACGCACTGGAACGAGACGCTGACTTCGTTCGGCTAATCTCATCACACGAGGCCAGCGACAGCCGTCGGCAGCAGCGACG
GCTGTCGCCAAAATCGTGGTTTTCTTCGCCTTTTAGGCCTGTGACGACGCATATCTCGATTCTGCTTCCATTTTCTCGCATCAGGCTGAACTTGCGCAGC
CCACACACCTCGGTCCGGTACCTCTCACAAAGATCTCGCTCGCCGTGGCTTTATCAACTCAGAACGCAACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 52 | 1257 | + | No |
Chemistry : DDE
ORF sequence :
MSVTSKSADRPSPDATDANNFNSAETVADELYSLLAAGDSESIAQEFDIGIHTDKHDFDNHLKVAIREGLDPSSSLAELADKTAVDDSLDKMPESRFSEL
TNDRDYRAVVRMLFALLHTPQLYHQRAVQRKRLKWLTRGVIAVDATNLELTRSVVVSDEFVGDDEHVYEIDTDDGGLELHCAARVDGEHKHPLGTTVTEG
ETHESPQFDHLSDDVEVFADLDSVIWVFDRGYTRYRRFCEIKYSDDDFVTLLQSNARLDVLDTLQNVEVTNEDGTRQIRDEQIELAETGEQFRRIVLETP
DGEELQYLTTLASSAYDPIDVISIYTLRTMIEILFREFKQYLNVENFHSKSLNGVLFELFCALIGYVLVEWLRQRHPVKGGVARAIQKVRTHWNETLTSF
G
TNDRDYRAVVRMLFALLHTPQLYHQRAVQRKRLKWLTRGVIAVDATNLELTRSVVVSDEFVGDDEHVYEIDTDDGGLELHCAARVDGEHKHPLGTTVTEG
ETHESPQFDHLSDDVEVFADLDSVIWVFDRGYTRYRRFCEIKYSDDDFVTLLQSNARLDVLDTLQNVEVTNEDGTRQIRDEQIELAETGEQFRRIVLETP
DGEELQYLTTLASSAYDPIDVISIYTLRTMIEILFREFKQYLNVENFHSKSLNGVLFELFCALIGYVLVEWLRQRHPVKGGVARAIQKVRTHWNETLTSF
G
Blast result :
Comments
ISHth3 is 86% aa similar to ISHwa9.
IS_pep_1 is C451_03369.
IS_pep_1 is C451_03369.
References
1] Pfeiffer F. (2015) Direct submission