ISHth3

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halococcus thailandensis
Halococcus thailandensis
DNA section
IS Length : 1472 bp

Ends


IR Length : 23/35

IRL : CTGTGGCGTTTCGACTATTTAAAACCGGCGTGAGCCGGTAGTGACGGCCT
IRR : CTGTTGCGTTCTGAGTTGATAAAGCCACGGCGAGCGAGATCTTTGTGAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TGTGTTTTGATTGCTCATATTGAAAGGAATCC8

DNA sequence

CTGTGGCGTTTCGACTATTTAAAACCGGCGTGAGCCGGTAGTGACGGCCTGATGTCTGTGACCTCTAAGTCGGCAGATAGGCCGTCACCGGATGCAACGG
ACGCCAACAACTTCAACTCTGCCGAAACTGTCGCCGATGAGTTGTACTCGCTGCTCGCCGCAGGCGACAGCGAGTCCATTGCTCAGGAGTTCGATATCGG
CATCCACACCGACAAACACGACTTCGACAACCACCTCAAAGTAGCCATTCGTGAAGGACTTGATCCATCTAGTTCGCTCGCCGAACTTGCCGATAAGACC
GCTGTTGATGACTCTCTTGACAAAATGCCCGAGTCACGGTTCTCCGAACTCACGAACGACCGCGACTACCGCGCGGTCGTTCGCATGCTGTTCGCGTTGC
TCCATACGCCACAGCTGTATCATCAGCGTGCTGTCCAGCGAAAACGCCTGAAGTGGCTTACACGAGGGGTAATTGCTGTCGACGCGACGAATCTCGAACT
CACTCGCTCAGTTGTCGTCTCCGACGAATTTGTCGGAGACGACGAGCACGTCTATGAAATCGACACAGACGACGGTGGACTCGAACTTCATTGCGCCGCA
CGCGTAGACGGTGAACACAAGCATCCGCTTGGAACAACCGTGACAGAGGGTGAAACCCACGAAAGTCCGCAGTTCGACCATCTCAGCGATGACGTCGAGG
TCTTCGCAGACCTCGACTCGGTTATTTGGGTCTTTGACCGCGGATACACGCGCTATCGTCGCTTTTGTGAGATCAAGTACAGCGACGATGACTTCGTCAC
CCTACTCCAGTCAAACGCCCGTCTCGACGTTCTGGACACGCTCCAGAACGTCGAGGTCACTAATGAGGACGGAACGAGACAGATTCGTGACGAGCAAATT
GAACTGGCCGAGACCGGTGAACAGTTTCGTCGTATCGTTTTGGAAACGCCGGATGGAGAAGAGCTTCAGTACCTGACGACGCTGGCGTCGTCAGCGTACG
ATCCCATCGACGTGATCAGTATCTACACCCTCCGGACAATGATCGAGATTCTATTTCGTGAATTCAAACAATATCTGAACGTTGAGAATTTCCACTCGAA
ATCACTGAACGGCGTGTTGTTTGAGTTGTTCTGTGCGTTGATTGGATACGTGCTTGTGGAGTGGCTGCGCCAACGCCACCCGGTCAAGGGTGGCGTGGCG
CGTGCGATCCAGAAAGTCCGGACGCACTGGAACGAGACGCTGACTTCGTTCGGCTAATCTCATCACACGAGGCCAGCGACAGCCGTCGGCAGCAGCGACG
GCTGTCGCCAAAATCGTGGTTTTCTTCGCCTTTTAGGCCTGTGACGACGCATATCTCGATTCTGCTTCCATTTTCTCGCATCAGGCTGAACTTGCGCAGC
CCACACACCTCGGTCCGGTACCTCTCACAAAGATCTCGCTCGCCGTGGCTTTATCAACTCAGAACGCAACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa521257+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSVTSKSADRPSPDATDANNFNSAETVADELYSLLAAGDSESIAQEFDIGIHTDKHDFDNHLKVAIREGLDPSSSLAELADKTAVDDSLDKMPESRFSEL
TNDRDYRAVVRMLFALLHTPQLYHQRAVQRKRLKWLTRGVIAVDATNLELTRSVVVSDEFVGDDEHVYEIDTDDGGLELHCAARVDGEHKHPLGTTVTEG
ETHESPQFDHLSDDVEVFADLDSVIWVFDRGYTRYRRFCEIKYSDDDFVTLLQSNARLDVLDTLQNVEVTNEDGTRQIRDEQIELAETGEQFRRIVLETP
DGEELQYLTTLASSAYDPIDVISIYTLRTMIEILFREFKQYLNVENFHSKSLNGVLFELFCALIGYVLVEWLRQRHPVKGGVARAIQKVRTHWNETLTSF
G

 

Blast result :
Comments
ISHth3 is 86% aa similar to ISHwa9.
IS_pep_1 is C451_03369.
References
1] Pfeiffer F. (2015) Direct submission