ISHaha8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE717023 | ND | Halobacillus halophilus | Halobacillus halophilus DSM 2266 |
DNA section
IS Length : 1367 bp
Ends
Left end : CATTTATCGGCAGAAGCCTCCCTCTTCAAGCACTGTGTCGAAGACCGGTGGTAAGGGGGAGATGAATGCCTTCGCCTTCAGGCGAAGGTTTTCGTTTTCT II struct. : Yes
Right end : CGACGGGGCTAGCCTAATCATTTGAACGAATCGTTAGGTTCGTGCTCTTAGGAATCCCCCAACTTCAAGGAGTGTCAGCGAGTAAGTGGGGGTAGTTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCTGGGTCTTT | TTAG | TTTGAGACAA | tcaa |
TTTGATCCTCTT | TTAG | TGGACTAATC | tcaa |
TAAAAGCTCTTT | TTAG | TATATGTATA | tcaa |
DNA sequence
CATTTATCGGCAGAAGCCTCCCTCTTCAAGCACTGTGTCGAAGACCGGTGGTAAGGGGGAGATGAATGCCTTCGCCTTCAGGCGAAGGTTTTCGTTTTCT
ATTTTTACGGTCGTATGGTATTCTGAAATGAGAACGTAAGTTCCTGTATGGAGGTGGAAATGGTGACGCACAAAGCTTATAAATTTCGCATTTATCCTAG
TAAAGAACAAACAACGTTAATTGCTAAATCCATCGGATGTTCACGTTTTGTGTTTAATCATTTCCTCTCCGAGTGGAACAATGCTTACAAACGTTCTGGT
AAAGGTTTGTCTTATGCAAAATGCAATAAACAACTTACACAAATCAAACAAGATTTCCAATGGTTAAAAGAAGTTGATAGTACAGCTCTGCAAAATTCGT
TGAGGAATCTTGCAGATTCTTTCGATCGTTTTTTTAAGAAACTTAACAATAGACCGAAGTTCAAGTCTAAAAAGAATAGAAAGCAATCTTATACCGCTCA
ATACAACAAAGGCAATATCAGAATAGTCGGTAATAAAGTGAAGCTACCAAAGGTAGGCTGGGTGCTGTTTGCTAAGAGTCGTGAAGTAGAAGGGCGTATT
TTAAGCGCAACTGTTAGGCGGAATCCTTCAGGTAAACATTTTGTTTCTATTCTTGTTGATACAAAAGTCGAGAGACTTCCTAAAACCAACTCCTCTGTGG
GTATTGATCTCGGATTGAAAGACTTCGCTGTTCTCTCGAATGGCACCACCTATGAAAACCCACGATACCTACGTAAGACCGAAAAGAAACTAGCAAAAGC
TCAACGTATCATTTCCCGAAGGGAAAAGGGATCTTCGAATTGGCATAAGCAACGGATTAAAGTAGCCAGACTCCATGAAAAGATTACGAACTCTCGCAAA
GATTATCTGCATAAGATTTCTACCGAAATCATCAAAAACCACGATGTGATTGGGGTAGAAAATCTCCAAATTTCCAATATGCTCAAAAACCGAAAACTAT
CCAAATCGATTAGTGATGCGAGCTGGTCGATGTTCACTACTATGCTCGAATACAAAGCAGAATGGTACGGAAAACAATTGATACCCGTATCGAAAATTTT
TGCGAGTTCGCAACTGTGTTCCTATTGTGGATACCAAAACGGTGAGGTGAAGAATCTCGCTGTTCGAACGTGGGATTGCCCGAAGTGTGGCAGCCACCAC
AACCGCGATCTAAATGCGAGCTTCAATATATTGAAGGAGATTCAAAGGATCCTTCCAACCGTCGGTGCGACGGGGCTAGCCTAATCATTTGAACGAATCG
TTAGGTTCGTGCTCTTAGGAATCCCCCAACTTCAAGGAGTGTCAGCGAGTAAGTGGGGGTAGTTCAA
ATTTTTACGGTCGTATGGTATTCTGAAATGAGAACGTAAGTTCCTGTATGGAGGTGGAAATGGTGACGCACAAAGCTTATAAATTTCGCATTTATCCTAG
TAAAGAACAAACAACGTTAATTGCTAAATCCATCGGATGTTCACGTTTTGTGTTTAATCATTTCCTCTCCGAGTGGAACAATGCTTACAAACGTTCTGGT
AAAGGTTTGTCTTATGCAAAATGCAATAAACAACTTACACAAATCAAACAAGATTTCCAATGGTTAAAAGAAGTTGATAGTACAGCTCTGCAAAATTCGT
TGAGGAATCTTGCAGATTCTTTCGATCGTTTTTTTAAGAAACTTAACAATAGACCGAAGTTCAAGTCTAAAAAGAATAGAAAGCAATCTTATACCGCTCA
ATACAACAAAGGCAATATCAGAATAGTCGGTAATAAAGTGAAGCTACCAAAGGTAGGCTGGGTGCTGTTTGCTAAGAGTCGTGAAGTAGAAGGGCGTATT
TTAAGCGCAACTGTTAGGCGGAATCCTTCAGGTAAACATTTTGTTTCTATTCTTGTTGATACAAAAGTCGAGAGACTTCCTAAAACCAACTCCTCTGTGG
GTATTGATCTCGGATTGAAAGACTTCGCTGTTCTCTCGAATGGCACCACCTATGAAAACCCACGATACCTACGTAAGACCGAAAAGAAACTAGCAAAAGC
TCAACGTATCATTTCCCGAAGGGAAAAGGGATCTTCGAATTGGCATAAGCAACGGATTAAAGTAGCCAGACTCCATGAAAAGATTACGAACTCTCGCAAA
GATTATCTGCATAAGATTTCTACCGAAATCATCAAAAACCACGATGTGATTGGGGTAGAAAATCTCCAAATTTCCAATATGCTCAAAAACCGAAAACTAT
CCAAATCGATTAGTGATGCGAGCTGGTCGATGTTCACTACTATGCTCGAATACAAAGCAGAATGGTACGGAAAACAATTGATACCCGTATCGAAAATTTT
TGCGAGTTCGCAACTGTGTTCCTATTGTGGATACCAAAACGGTGAGGTGAAGAATCTCGCTGTTCGAACGTGGGATTGCCCGAAGTGTGGCAGCCACCAC
AACCGCGATCTAAATGCGAGCTTCAATATATTGAAGGAGATTCAAAGGATCCTTCCAACCGTCGGTGCGACGGGGCTAGCCTAATCATTTGAACGAATCG
TTAGGTTCGTGCTCTTAGGAATCCCCCAACTTCAAGGAGTGTCAGCGAGTAAGTGGGGGTAGTTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1125 bp | 374 aa | 160 | 1284 | + | No |
AG : TnpB
ORF sequence :
MVTHKAYKFRIYPSKEQTTLIAKSIGCSRFVFNHFLSEWNNAYKRSGKGLSYAKCNKQLTQIKQDFQWLKEVDSTALQNSLRNLADSFDRFFKKLNNRPK
FKSKKNRKQSYTAQYNKGNIRIVGNKVKLPKVGWVLFAKSREVEGRILSATVRRNPSGKHFVSILVDTKVERLPKTNSSVGIDLGLKDFAVLSNGTTYEN
PRYLRKTEKKLAKAQRIISRREKGSSNWHKQRIKVARLHEKITNSRKDYLHKISTEIIKNHDVIGVENLQISNMLKNRKLSKSISDASWSMFTTMLEYKA
EWYGKQLIPVSKIFASSQLCSYCGYQNGEVKNLAVRTWDCPKCGSHHNRDLNASFNILKEIQRILPTVGATGLA
FKSKKNRKQSYTAQYNKGNIRIVGNKVKLPKVGWVLFAKSREVEGRILSATVRRNPSGKHFVSILVDTKVERLPKTNSSVGIDLGLKDFAVLSNGTTYEN
PRYLRKTEKKLAKAQRIISRREKGSSNWHKQRIKVARLHEKITNSRKDYLHKISTEIIKNHDVIGVENLQISNMLKNRKLSKSISDASWSMFTTMLEYKA
EWYGKQLIPVSKIFASSQLCSYCGYQNGEVKNLAVRTWDCPKCGSHHNRDLNASFNILKEIQRILPTVGATGLA
Blast result :
Comments
ISHaha8 is 89% (TnpB) aa similar to ISHaha7.
References