ISHli14

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1650 bp

Ends


Left end : CTTCCTACAAGGAGGGAATCCCGGCCTTCAGGCCGTCACCAGAACGCGCGGCGTTCTGGTTGCCCGCCAGACGCAGTCTGGCGACCGGGAGGGAATCCGA II struct. : Yes
Right end : ACTCACAACATTCCAAGAGTCGAAATCCACTGCCAGCGACGACTAACTGGCATTCCCACCGTGTGGGAAGCCCCGTCGTTTACGACGGGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCTGTTTTTCGACCATCCGGCTGAACGGtcac

DNA sequence

CTTCCTACAAGGAGGGAATCCCGGCCTTCAGGCCGTCACCAGAACGCGCGGCGTTCTGGTTGCCCGCCAGACGCAGTCTGGCGACCGGGAGGGAATCCGA
CAACTGCTGAACTAACCACGCTCAGATGCTCGGTCTGAATGCCGACCGTCATCTTTAACTTACGTTGGTCCTTACGTTTTGTCGGATGAGAGCCGATTTC
GATATGGAGCGTGGCGGGCCACTTCACGAGGCTGTGAAGGACTATGCCCGCGATCACGGGATACGACACTCACGAGCGTACCCCGAACTCCTCCGCAAAG
GACTCGAATCCGAAGGCTACGATGTCAACGACTCAGACAGCGAATAAAACACTGGAAGCCACGCTCGTACCGCCCACACGGTGCAAAGAGCAACGCCTCC
AGCAAACGCTGTCCGAATACCGTGAGGCACTACATGACGCCTTCGAGCAAAACTGTACGACGATGAGTGCCACGAACGACGTGGTGACACCGTACAACCT
GCCGTACCAAGCAAAAGACGCCCTCAAATCATACGTCCCGAAACTCCACAAGACGTACAACGCTCAGGAAGTGGATGACGAACACCCGCTCCGATTCGTG
AACCGAGCCGGGAAGTTCGACCGCGACTCCTCGCGTGAGTACGAAATCTGCTGGAACGTTCCGCAACCCGGTCGCGGAACTAACTTCTGGATTCCTCTTC
GATTAAATCCAAACCAGCAAGAGTTGTGGGACGATCTACTCGATGAGGAATCGAGTACGAACGTGGGCGAGCTTCGCTTGCAGAAACACCGAAAGACGTG
GACGCTCCACGTCACCGTCGAATACGAGATCGAGGATACTTCCGAACACCCCGAGAATCCGACTCGGGTTGGATTCGATATTGGCGAGTCAATGTTGGTC
ACGGGCTGTGCCCTCCAACACGACACTCCCACGAAACCACTGTTAATCAACGGGAAAGAAGCCAAGCGAATCCGAAAAGAGATGCACACAACGCTCAAAC
GACTCCAAGAGCGAGACGCTTCGGACTGGCGTACCGAGGAACGATTCTCGTACTACCAGAATCGACTCACAGACATCATCGAGAAGGCGTCTCGTGAGTC
TGTGGAGTATGCTCGCCAGTTCGAGAATCCCGTCATCGTGATGGAGGACTTGGCATACATCCGTGAGTCGCTGGACTACGGGAAGTACATGAATCGACGG
TTGCATTCGTGGGCTTTTGCTCGGTTGCAGGGGCGTATTGAGGACAAAGCCCGAGACGCGGGTATTCCGGTGCGGTACGTCCACCCGCAGTACACCAGCA
AGACGTGCCACTTGTGCAAGCACATCGGGTATCGGCCTCGGCAAGCCGAGTTCAAGTGCAGAAACCCGGAGTGCCACGTATCGACGTTTCAAGCCGACAT
CAACGCGAGTGCGAACATCGCACGTCGCGTAGACCCGTGGGGAGAGAGTCTACCAGTGAAACAGGTGGACGATGACTCGCCACAGGACGGGAGCCGTTGT
GACACGGCCACGACTCACTGTGAGCAGAGCGAGACATCCTCGCAGATGACACTCACAACATTCCAAGAGTCGAAATCCACTGCCAGCGACGACTAACTGG
CATTCCCACCGTGTGGGAAGCCCCGTCGTTTACGACGGGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
162 bp53 aa186347+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRADFDMERGGPLHEAVKDYARDHGIRHSRAYPELLRKGLESEGYDVNDSDSE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1275 bp424 aa3221596+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSTTQTANKTLEATLVPPTRCKEQRLQQTLSEYREALHDAFEQNCTTMSATNDVVTPYNLPYQAKDALKSYVPKLHKTYNAQEVDDEHPLRFVNRAGKFD
RDSSREYEICWNVPQPGRGTNFWIPLRLNPNQQELWDDLLDEESSTNVGELRLQKHRKTWTLHVTVEYEIEDTSEHPENPTRVGFDIGESMLVTGCALQH
DTPTKPLLINGKEAKRIRKEMHTTLKRLQERDASDWRTEERFSYYQNRLTDIIEKASRESVEYARQFENPVIVMEDLAYIRESLDYGKYMNRRLHSWAFA
RLQGRIEDKARDAGIPVRYVHPQYTSKTCHLCKHIGYRPRQAEFKCRNPECHVSTFQADINASANIARRVDPWGESLPVKQVDDDSPQDGSRCDTATTHC
EQSETSSQMTLTTFQESKSTASDD

 

Blast result :
Comments
ISHli14 is 79% (TnpB) aa similar to ISHla19. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.