ISHli14
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1650 bp
Ends
Left end : CTTCCTACAAGGAGGGAATCCCGGCCTTCAGGCCGTCACCAGAACGCGCGGCGTTCTGGTTGCCCGCCAGACGCAGTCTGGCGACCGGGAGGGAATCCGA II struct. : Yes
Right end : ACTCACAACATTCCAAGAGTCGAAATCCACTGCCAGCGACGACTAACTGGCATTCCCACCGTGTGGGAAGCCCCGTCGTTTACGACGGGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCTGTTTTTCGA | CCAT | CCGGCTGAACGG | tcac |
DNA sequence
CTTCCTACAAGGAGGGAATCCCGGCCTTCAGGCCGTCACCAGAACGCGCGGCGTTCTGGTTGCCCGCCAGACGCAGTCTGGCGACCGGGAGGGAATCCGA
CAACTGCTGAACTAACCACGCTCAGATGCTCGGTCTGAATGCCGACCGTCATCTTTAACTTACGTTGGTCCTTACGTTTTGTCGGATGAGAGCCGATTTC
GATATGGAGCGTGGCGGGCCACTTCACGAGGCTGTGAAGGACTATGCCCGCGATCACGGGATACGACACTCACGAGCGTACCCCGAACTCCTCCGCAAAG
GACTCGAATCCGAAGGCTACGATGTCAACGACTCAGACAGCGAATAAAACACTGGAAGCCACGCTCGTACCGCCCACACGGTGCAAAGAGCAACGCCTCC
AGCAAACGCTGTCCGAATACCGTGAGGCACTACATGACGCCTTCGAGCAAAACTGTACGACGATGAGTGCCACGAACGACGTGGTGACACCGTACAACCT
GCCGTACCAAGCAAAAGACGCCCTCAAATCATACGTCCCGAAACTCCACAAGACGTACAACGCTCAGGAAGTGGATGACGAACACCCGCTCCGATTCGTG
AACCGAGCCGGGAAGTTCGACCGCGACTCCTCGCGTGAGTACGAAATCTGCTGGAACGTTCCGCAACCCGGTCGCGGAACTAACTTCTGGATTCCTCTTC
GATTAAATCCAAACCAGCAAGAGTTGTGGGACGATCTACTCGATGAGGAATCGAGTACGAACGTGGGCGAGCTTCGCTTGCAGAAACACCGAAAGACGTG
GACGCTCCACGTCACCGTCGAATACGAGATCGAGGATACTTCCGAACACCCCGAGAATCCGACTCGGGTTGGATTCGATATTGGCGAGTCAATGTTGGTC
ACGGGCTGTGCCCTCCAACACGACACTCCCACGAAACCACTGTTAATCAACGGGAAAGAAGCCAAGCGAATCCGAAAAGAGATGCACACAACGCTCAAAC
GACTCCAAGAGCGAGACGCTTCGGACTGGCGTACCGAGGAACGATTCTCGTACTACCAGAATCGACTCACAGACATCATCGAGAAGGCGTCTCGTGAGTC
TGTGGAGTATGCTCGCCAGTTCGAGAATCCCGTCATCGTGATGGAGGACTTGGCATACATCCGTGAGTCGCTGGACTACGGGAAGTACATGAATCGACGG
TTGCATTCGTGGGCTTTTGCTCGGTTGCAGGGGCGTATTGAGGACAAAGCCCGAGACGCGGGTATTCCGGTGCGGTACGTCCACCCGCAGTACACCAGCA
AGACGTGCCACTTGTGCAAGCACATCGGGTATCGGCCTCGGCAAGCCGAGTTCAAGTGCAGAAACCCGGAGTGCCACGTATCGACGTTTCAAGCCGACAT
CAACGCGAGTGCGAACATCGCACGTCGCGTAGACCCGTGGGGAGAGAGTCTACCAGTGAAACAGGTGGACGATGACTCGCCACAGGACGGGAGCCGTTGT
GACACGGCCACGACTCACTGTGAGCAGAGCGAGACATCCTCGCAGATGACACTCACAACATTCCAAGAGTCGAAATCCACTGCCAGCGACGACTAACTGG
CATTCCCACCGTGTGGGAAGCCCCGTCGTTTACGACGGGGAGGATGTCAC
CAACTGCTGAACTAACCACGCTCAGATGCTCGGTCTGAATGCCGACCGTCATCTTTAACTTACGTTGGTCCTTACGTTTTGTCGGATGAGAGCCGATTTC
GATATGGAGCGTGGCGGGCCACTTCACGAGGCTGTGAAGGACTATGCCCGCGATCACGGGATACGACACTCACGAGCGTACCCCGAACTCCTCCGCAAAG
GACTCGAATCCGAAGGCTACGATGTCAACGACTCAGACAGCGAATAAAACACTGGAAGCCACGCTCGTACCGCCCACACGGTGCAAAGAGCAACGCCTCC
AGCAAACGCTGTCCGAATACCGTGAGGCACTACATGACGCCTTCGAGCAAAACTGTACGACGATGAGTGCCACGAACGACGTGGTGACACCGTACAACCT
GCCGTACCAAGCAAAAGACGCCCTCAAATCATACGTCCCGAAACTCCACAAGACGTACAACGCTCAGGAAGTGGATGACGAACACCCGCTCCGATTCGTG
AACCGAGCCGGGAAGTTCGACCGCGACTCCTCGCGTGAGTACGAAATCTGCTGGAACGTTCCGCAACCCGGTCGCGGAACTAACTTCTGGATTCCTCTTC
GATTAAATCCAAACCAGCAAGAGTTGTGGGACGATCTACTCGATGAGGAATCGAGTACGAACGTGGGCGAGCTTCGCTTGCAGAAACACCGAAAGACGTG
GACGCTCCACGTCACCGTCGAATACGAGATCGAGGATACTTCCGAACACCCCGAGAATCCGACTCGGGTTGGATTCGATATTGGCGAGTCAATGTTGGTC
ACGGGCTGTGCCCTCCAACACGACACTCCCACGAAACCACTGTTAATCAACGGGAAAGAAGCCAAGCGAATCCGAAAAGAGATGCACACAACGCTCAAAC
GACTCCAAGAGCGAGACGCTTCGGACTGGCGTACCGAGGAACGATTCTCGTACTACCAGAATCGACTCACAGACATCATCGAGAAGGCGTCTCGTGAGTC
TGTGGAGTATGCTCGCCAGTTCGAGAATCCCGTCATCGTGATGGAGGACTTGGCATACATCCGTGAGTCGCTGGACTACGGGAAGTACATGAATCGACGG
TTGCATTCGTGGGCTTTTGCTCGGTTGCAGGGGCGTATTGAGGACAAAGCCCGAGACGCGGGTATTCCGGTGCGGTACGTCCACCCGCAGTACACCAGCA
AGACGTGCCACTTGTGCAAGCACATCGGGTATCGGCCTCGGCAAGCCGAGTTCAAGTGCAGAAACCCGGAGTGCCACGTATCGACGTTTCAAGCCGACAT
CAACGCGAGTGCGAACATCGCACGTCGCGTAGACCCGTGGGGAGAGAGTCTACCAGTGAAACAGGTGGACGATGACTCGCCACAGGACGGGAGCCGTTGT
GACACGGCCACGACTCACTGTGAGCAGAGCGAGACATCCTCGCAGATGACACTCACAACATTCCAAGAGTCGAAATCCACTGCCAGCGACGACTAACTGG
CATTCCCACCGTGTGGGAAGCCCCGTCGTTTACGACGGGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
162 bp | 53 aa | 186 | 347 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRADFDMERGGPLHEAVKDYARDHGIRHSRAYPELLRKGLESEGYDVNDSDSE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 322 | 1596 | + | No |
AG : TnpB
ORF sequence :
MSTTQTANKTLEATLVPPTRCKEQRLQQTLSEYREALHDAFEQNCTTMSATNDVVTPYNLPYQAKDALKSYVPKLHKTYNAQEVDDEHPLRFVNRAGKFD
RDSSREYEICWNVPQPGRGTNFWIPLRLNPNQQELWDDLLDEESSTNVGELRLQKHRKTWTLHVTVEYEIEDTSEHPENPTRVGFDIGESMLVTGCALQH
DTPTKPLLINGKEAKRIRKEMHTTLKRLQERDASDWRTEERFSYYQNRLTDIIEKASRESVEYARQFENPVIVMEDLAYIRESLDYGKYMNRRLHSWAFA
RLQGRIEDKARDAGIPVRYVHPQYTSKTCHLCKHIGYRPRQAEFKCRNPECHVSTFQADINASANIARRVDPWGESLPVKQVDDDSPQDGSRCDTATTHC
EQSETSSQMTLTTFQESKSTASDD
RDSSREYEICWNVPQPGRGTNFWIPLRLNPNQQELWDDLLDEESSTNVGELRLQKHRKTWTLHVTVEYEIEDTSEHPENPTRVGFDIGESMLVTGCALQH
DTPTKPLLINGKEAKRIRKEMHTTLKRLQERDASDWRTEERFSYYQNRLTDIIEKASRESVEYARQFENPVIVMEDLAYIRESLDYGKYMNRRLHSWAFA
RLQGRIEDKARDAGIPVRYVHPQYTSKTCHLCKHIGYRPRQAEFKCRNPECHVSTFQADINASANIARRVDPWGESLPVKQVDDDSPQDGSRCDTATTHC
EQSETSSQMTLTTFQESKSTASDD
Blast result :
Comments
ISHli14 is 79% (TnpB) aa similar to ISHla19. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.