ISHma15
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY596297 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 |
DNA section
IS Length : 1702 bp
Ends
Left end : GATTCAGCGAGAGAATCCCGCCCTTCCTGCGAAAGACGAGCGTTCCGACGCTCAGTCGGAACCGAGGACTGAGCAGGGCGGGAGTGAATCGCGTAAGCTC II struct. : Yes
Right end : AAGTACCGTCCACCGTGACGGGAATATTGCTTCCGGGGAATCGGCATAGCCGAGACTCCTACGGAGGAAACCGCGCCGTTCACGGCGCGGAGGATGTCAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCTCAATCGGCGCTA | TCTT | GCGACCTCGCCA | tcat |
DNA sequence
GATTCAGCGAGAGAATCCCGCCCTTCCTGCGAAAGACGAGCGTTCCGACGCTCAGTCGGAACCGAGGACTGAGCAGGGCGGGAGTGAATCGCGTAAGCTC
TGGTGAGAAACTGCCGTGTTACTGCTGTTATTGAGTCTCCAGCGTGTCGAGTCCGGCTCCTAACACCTCTGTATAGGCTTCCGAGAGAGTCAAATCGTTT
GCCTCTGCGTAGTCTTTGATACGTCCGTGGATTGCCCAGTCAATGTCGATGTTTGGCCTCATCAGTAGACTTATTAGACATTGAGACTGATTATACTTTG
GATGAAGCGTGCCAACACGTTCGCCGTGCGACCGCTTTCAGACGATGGTAAGCAGGTGCTACGGGACCTGTTGGACGCGTGTGCCGCTCTCTGGAACGAG
ATAAATTACGAACGCCTCATGCGCTACAACGACGAAGACGGCTTCGAGGGCGAAGACGTGTGGGACGCCGATACAGGCCGACTTGAGGGCAAATACAAAG
CCGTTCTCGGCGCATCCACCGCTCAAACTGTCCGGCGAGCAAACAGCGAAGCGTGGCGCGGGTTCTTCGAGAGCAAGAAGGCGTATCACGACGAGTCAAA
CACGTCGGTTACGGAACACCCGGAACCGCCGGGCTTCCGTGGCAACGAAGACGACGGACGTGTTCTCAAAGGCGTTGTCCGAAAGGACGCCTACACCATC
GAGTGGGGTGACCGTTCTCGGCTTGAAATGGTCGTCGGAAAAGAACTCCGTGACAGGCACAACAGCCCGAAAAGTCGTCTTCGGCTCGAAATCGTTGGCG
ACCCGAACTGGCCTGATTACGAGGACCAGAGCCGGTTGGAACTGTGGTACGACGAGACTGACAACACGTTCAGGGCTTCGCAACCCGTGACTGTTTCTGA
TGATGCACGGGACACTCCACTGGCCGACGAGAAGGCCGCTCTGGATATTGGTGCGAACAATCTCGTTGCCTGTACCACGACAACTGGCGAGCAATATCTG
TACGAGGGCCGTGAGTTATTCCAGCGATTCCGTGAAACGACACGAGAAATCGCCCGGTTACAGTCGAAACTCGAAGAAGGCAGGTACAGTAGTGAGCGCA
TCCGGCGGCTGTACCGGAAACGCACTCGTCGCCGCGACCACGCACAAGAAGCACTGTGTCGTGACCTGCTCGAACGACTGTACGCCGAAGGTGTCGATAC
CGTGTATATCGGTGGCCTGACCGACGTACTCGAAACGCACTGGTCGGTCGAAACCAACGCCAAGACTCACAACTTCTGGGCGTTCAAGCAGTTCACCGAA
CGACTGGCGTGTACCGCCGAAGAATACGGTATTTCGGTGGAAGTCCGGTCGGAGGCGTGGACCAGCCAAGAGTGCCCGCAGTGTGGTTCGACGGGCCGAA
CGACACGGCACCAAGACACACTCACCTGTCAGTGCGGGTTCGAGGGCCACGCCGACCTTACGGCGTCAGAGACGTTCCTGAAGCGGCAGATAAAGCAGGC
AGTTAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAGTGGTCGGAGCTACCACGCTCTCATGAAAGTCCCAAAGAACAGCGCACAGAC
CCAAGTACCGTCCACCGTGACGGGAATATTGCTTCCGGGGAATCGGCATAGCCGAGACTCCTACGGAGGAAACCGCGCCGTTCACGGCGCGGAGGATGTC
AT
TGGTGAGAAACTGCCGTGTTACTGCTGTTATTGAGTCTCCAGCGTGTCGAGTCCGGCTCCTAACACCTCTGTATAGGCTTCCGAGAGAGTCAAATCGTTT
GCCTCTGCGTAGTCTTTGATACGTCCGTGGATTGCCCAGTCAATGTCGATGTTTGGCCTCATCAGTAGACTTATTAGACATTGAGACTGATTATACTTTG
GATGAAGCGTGCCAACACGTTCGCCGTGCGACCGCTTTCAGACGATGGTAAGCAGGTGCTACGGGACCTGTTGGACGCGTGTGCCGCTCTCTGGAACGAG
ATAAATTACGAACGCCTCATGCGCTACAACGACGAAGACGGCTTCGAGGGCGAAGACGTGTGGGACGCCGATACAGGCCGACTTGAGGGCAAATACAAAG
CCGTTCTCGGCGCATCCACCGCTCAAACTGTCCGGCGAGCAAACAGCGAAGCGTGGCGCGGGTTCTTCGAGAGCAAGAAGGCGTATCACGACGAGTCAAA
CACGTCGGTTACGGAACACCCGGAACCGCCGGGCTTCCGTGGCAACGAAGACGACGGACGTGTTCTCAAAGGCGTTGTCCGAAAGGACGCCTACACCATC
GAGTGGGGTGACCGTTCTCGGCTTGAAATGGTCGTCGGAAAAGAACTCCGTGACAGGCACAACAGCCCGAAAAGTCGTCTTCGGCTCGAAATCGTTGGCG
ACCCGAACTGGCCTGATTACGAGGACCAGAGCCGGTTGGAACTGTGGTACGACGAGACTGACAACACGTTCAGGGCTTCGCAACCCGTGACTGTTTCTGA
TGATGCACGGGACACTCCACTGGCCGACGAGAAGGCCGCTCTGGATATTGGTGCGAACAATCTCGTTGCCTGTACCACGACAACTGGCGAGCAATATCTG
TACGAGGGCCGTGAGTTATTCCAGCGATTCCGTGAAACGACACGAGAAATCGCCCGGTTACAGTCGAAACTCGAAGAAGGCAGGTACAGTAGTGAGCGCA
TCCGGCGGCTGTACCGGAAACGCACTCGTCGCCGCGACCACGCACAAGAAGCACTGTGTCGTGACCTGCTCGAACGACTGTACGCCGAAGGTGTCGATAC
CGTGTATATCGGTGGCCTGACCGACGTACTCGAAACGCACTGGTCGGTCGAAACCAACGCCAAGACTCACAACTTCTGGGCGTTCAAGCAGTTCACCGAA
CGACTGGCGTGTACCGCCGAAGAATACGGTATTTCGGTGGAAGTCCGGTCGGAGGCGTGGACCAGCCAAGAGTGCCCGCAGTGTGGTTCGACGGGCCGAA
CGACACGGCACCAAGACACACTCACCTGTCAGTGCGGGTTCGAGGGCCACGCCGACCTTACGGCGTCAGAGACGTTCCTGAAGCGGCAGATAAAGCAGGC
AGTTAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAGTGGTCGGAGCTACCACGCTCTCATGAAAGTCCCAAAGAACAGCGCACAGAC
CCAAGTACCGTCCACCGTGACGGGAATATTGCTTCCGGGGAATCGGCATAGCCGAGACTCCTACGGAGGAAACCGCGCCGTTCACGGCGCGGAGGATGTC
AT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
134 bp | 44 aa | 262 | 129 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRPNIDIDWAIHGRIKDYAEANDLTLSEAYTEVLGAGLDTLETQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 449 aa | 302 | 1651 | + | No |
AG : TnpB
ORF sequence :
MKRANTFAVRPLSDDGKQVLRDLLDACAALWNEINYERLMRYNDEDGFEGEDVWDADTGRLEGKYKAVLGASTAQTVRRANSEAWRGFFESKKAYHDESN
TSVTEHPEPPGFRGNEDDGRVLKGVVRKDAYTIEWGDRSRLEMVVGKELRDRHNSPKSRLRLEIVGDPNWPDYEDQSRLELWYDETDNTFRASQPVTVSD
DARDTPLADEKAALDIGANNLVACTTTTGEQYLYEGRELFQRFRETTREIARLQSKLEEGRYSSERIRRLYRKRTRRRDHAQEALCRDLLERLYAEGVDT
VYIGGLTDVLETHWSVETNAKTHNFWAFKQFTERLACTAEEYGISVEVRSEAWTSQECPQCGSTGRTTRHQDTLTCQCGFEGHADLTASETFLKRQIKQA
VRPMARPVRFEWDDHEWSELPRSHESPKEQRTDPSTVHRDGNIASGESA
TSVTEHPEPPGFRGNEDDGRVLKGVVRKDAYTIEWGDRSRLEMVVGKELRDRHNSPKSRLRLEIVGDPNWPDYEDQSRLELWYDETDNTFRASQPVTVSD
DARDTPLADEKAALDIGANNLVACTTTTGEQYLYEGRELFQRFRETTREIARLQSKLEEGRYSSERIRRLYRKRTRRRDHAQEALCRDLLERLYAEGVDT
VYIGGLTDVLETHWSVETNAKTHNFWAFKQFTERLACTAEEYGISVEVRSEAWTSQECPQCGSTGRTTRHQDTLTCQCGFEGHADLTASETFLKRQIKQA
VRPMARPVRFEWDDHEWSELPRSHESPKEQRTDPSTVHRDGNIASGESA
Blast result :
Comments
ISHma15 is 92% (TnpB) aa similar to ISNamo22. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] F. Pfeiffer (2013) Direct submission
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234