ISHam1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLW01000035 | ND | Haloarcula amylolytica | Haloarcula amylolytica |
DNA section
IS Length : 1139 bp
Ends
IR Length : 17/24
IRL : ATGAGTATGAATACTTTTGCAAGTAGAGATCACTGTTGAGGTAATGGGAT
IRR : ATAATTAAGATAACTTTTGAAAGTCAAGGAACTGTTCACACCACTTCCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCGACGGCT | TA | TGAGGGGCAG | 2 |
DNA sequence
ATGAGTATGAATACTTTTGCAAGTAGAGATCACTGTTGAGGTAATGGGATCACGCCGAACTGAGATCAAGCGTCACCTGCCGGAAGAAGAGATTGACGAG
ATGCTGAGAGAAGCTGAAGACGATCACCACCTTCGCCGAATCGGCTTCATCAAGAACCTCTATCAGGGCGATACGATTCCTGAAGCTGCTGATCGGGAAG
GTCGATCAGCAGCAACAGGAACACGCTGGGCAGAGGACTGGAACGAAGGAGGCTTCGAAGAACTCATGCCGAGTTTCGGGGGTGGCCGGCCCCCGAAACT
CGACGAGGATGAGCAAGAAGAGCTGGTGGAGATGCTTCGTGACGGCCAACCGTGGAAATCGCAAGAGATTCAGCATCTTCTCCAGGCGGAATTTGGCGTT
TCCTACAGCCCAAATTATCTCGGTACCTTCCTTCGGGAACTCGGTCTCTCATACGCGAAACCACGACCAAAGCGTCCACACCGGCCAGAGAACCCTGATG
AAATCCTCGAAGAGCGCGTCGACGACGCGCTCGACGAGGATGACCAGCCACATAACAAACGTGAGGGAGAAGACGAAGAAGGGTGGATTGTTGAGGATGA
TACCTGTACTGATGGCGGTACCGTCCTCGGGTTTTTTGATGCATCAAAGCCACAGCTGTACGATAATTCGCGGCGGGTTTGGTACGTTGACGATCCTCAT
ATTGAACGGGAATTAGTCAAGGCACACGATTCTGCGGTCGGATTCTACGCCCTCAACGGTGAAAGTCTGGTAACGTTCACCGAAGACGAAGAGAAAGAGC
GGATTTGCGGGGTATTAGAGAAGATCCGCGAGCAGAATACCGACAAGCGGATTCTGCTCGTCTTGGACAAGCACGGTTTACATAGATGTGAATACACACG
CAAGCGCGCGCATCAGCTCGGGATTGACCTGATTTTCATTCCATCAGGCTCACCGCACCTGAATCCAATCGAGCAAGTCTGGGACTACCTCAAGTGGACG
ATGGCACCAATTGTCGTTGAGAACGAAGCGGAATTCAAAGACCTCGTCCAGAAAACCTTCGAGAAAATAACGAAGCGCATCAGCTTCGCAAGGAAGTGGT
GTGAACAGTTCCTTGACTTTCAAAAGTTATCTTAATTAT
ATGCTGAGAGAAGCTGAAGACGATCACCACCTTCGCCGAATCGGCTTCATCAAGAACCTCTATCAGGGCGATACGATTCCTGAAGCTGCTGATCGGGAAG
GTCGATCAGCAGCAACAGGAACACGCTGGGCAGAGGACTGGAACGAAGGAGGCTTCGAAGAACTCATGCCGAGTTTCGGGGGTGGCCGGCCCCCGAAACT
CGACGAGGATGAGCAAGAAGAGCTGGTGGAGATGCTTCGTGACGGCCAACCGTGGAAATCGCAAGAGATTCAGCATCTTCTCCAGGCGGAATTTGGCGTT
TCCTACAGCCCAAATTATCTCGGTACCTTCCTTCGGGAACTCGGTCTCTCATACGCGAAACCACGACCAAAGCGTCCACACCGGCCAGAGAACCCTGATG
AAATCCTCGAAGAGCGCGTCGACGACGCGCTCGACGAGGATGACCAGCCACATAACAAACGTGAGGGAGAAGACGAAGAAGGGTGGATTGTTGAGGATGA
TACCTGTACTGATGGCGGTACCGTCCTCGGGTTTTTTGATGCATCAAAGCCACAGCTGTACGATAATTCGCGGCGGGTTTGGTACGTTGACGATCCTCAT
ATTGAACGGGAATTAGTCAAGGCACACGATTCTGCGGTCGGATTCTACGCCCTCAACGGTGAAAGTCTGGTAACGTTCACCGAAGACGAAGAGAAAGAGC
GGATTTGCGGGGTATTAGAGAAGATCCGCGAGCAGAATACCGACAAGCGGATTCTGCTCGTCTTGGACAAGCACGGTTTACATAGATGTGAATACACACG
CAAGCGCGCGCATCAGCTCGGGATTGACCTGATTTTCATTCCATCAGGCTCACCGCACCTGAATCCAATCGAGCAAGTCTGGGACTACCTCAAGTGGACG
ATGGCACCAATTGTCGTTGAGAACGAAGCGGAATTCAAAGACCTCGTCCAGAAAACCTTCGAGAAAATAACGAAGCGCATCAGCTTCGCAAGGAAGTGGT
GTGAACAGTTCCTTGACTTTCAAAAGTTATCTTAATTAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1092 bp | 363 aa | 45 | 1136 | + | No |
Chemistry : DDE
ORF sequence :
MGSRRTEIKRHLPEEEIDEMLREAEDDHHLRRIGFIKNLYQGDTIPEAADREGRSAATGTRWAEDWNEGGFEELMPSFGGGRPPKLDEDEQEELVEMLRD
GQPWKSQEIQHLLQAEFGVSYSPNYLGTFLRELGLSYAKPRPKRPHRPENPDEILEERVDDALDEDDQPHNKREGEDEEGWIVEDDTCTDGGTVLGFFDA
SKPQLYDNSRRVWYVDDPHIERELVKAHDSAVGFYALNGESLVTFTEDEEKERICGVLEKIREQNTDKRILLVLDKHGLHRCEYTRKRAHQLGIDLIFIP
SGSPHLNPIEQVWDYLKWTMAPIVVENEAEFKDLVQKTFEKITKRISFARKWCEQFLDFQKLS
GQPWKSQEIQHLLQAEFGVSYSPNYLGTFLRELGLSYAKPRPKRPHRPENPDEILEERVDDALDEDDQPHNKREGEDEEGWIVEDDTCTDGGTVLGFFDA
SKPQLYDNSRRVWYVDDPHIERELVKAHDSAVGFYALNGESLVTFTEDEEKERICGVLEKIREQNTDKRILLVLDKHGLHRCEYTRKRAHQLGIDLIFIP
SGSPHLNPIEQVWDYLKWTMAPIVVENEAEFKDLVQKTFEKITKRISFARKWCEQFLDFQKLS
Blast result :
Comments
ISHam1 is 86% aa similar to ISHwa7.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.