ISHam1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLW01000035 ND Haloarcula amylolytica
Haloarcula amylolytica
DNA section
IS Length : 1139 bp

Ends


IR Length : 17/24

IRL : ATGAGTATGAATACTTTTGCAAGTAGAGATCACTGTTGAGGTAATGGGAT
IRR : ATAATTAAGATAACTTTTGAAAGTCAAGGAACTGTTCACACCACTTCCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCGACGGCTTATGAGGGGCAG2

DNA sequence

ATGAGTATGAATACTTTTGCAAGTAGAGATCACTGTTGAGGTAATGGGATCACGCCGAACTGAGATCAAGCGTCACCTGCCGGAAGAAGAGATTGACGAG
ATGCTGAGAGAAGCTGAAGACGATCACCACCTTCGCCGAATCGGCTTCATCAAGAACCTCTATCAGGGCGATACGATTCCTGAAGCTGCTGATCGGGAAG
GTCGATCAGCAGCAACAGGAACACGCTGGGCAGAGGACTGGAACGAAGGAGGCTTCGAAGAACTCATGCCGAGTTTCGGGGGTGGCCGGCCCCCGAAACT
CGACGAGGATGAGCAAGAAGAGCTGGTGGAGATGCTTCGTGACGGCCAACCGTGGAAATCGCAAGAGATTCAGCATCTTCTCCAGGCGGAATTTGGCGTT
TCCTACAGCCCAAATTATCTCGGTACCTTCCTTCGGGAACTCGGTCTCTCATACGCGAAACCACGACCAAAGCGTCCACACCGGCCAGAGAACCCTGATG
AAATCCTCGAAGAGCGCGTCGACGACGCGCTCGACGAGGATGACCAGCCACATAACAAACGTGAGGGAGAAGACGAAGAAGGGTGGATTGTTGAGGATGA
TACCTGTACTGATGGCGGTACCGTCCTCGGGTTTTTTGATGCATCAAAGCCACAGCTGTACGATAATTCGCGGCGGGTTTGGTACGTTGACGATCCTCAT
ATTGAACGGGAATTAGTCAAGGCACACGATTCTGCGGTCGGATTCTACGCCCTCAACGGTGAAAGTCTGGTAACGTTCACCGAAGACGAAGAGAAAGAGC
GGATTTGCGGGGTATTAGAGAAGATCCGCGAGCAGAATACCGACAAGCGGATTCTGCTCGTCTTGGACAAGCACGGTTTACATAGATGTGAATACACACG
CAAGCGCGCGCATCAGCTCGGGATTGACCTGATTTTCATTCCATCAGGCTCACCGCACCTGAATCCAATCGAGCAAGTCTGGGACTACCTCAAGTGGACG
ATGGCACCAATTGTCGTTGAGAACGAAGCGGAATTCAAAGACCTCGTCCAGAAAACCTTCGAGAAAATAACGAAGCGCATCAGCTTCGCAAGGAAGTGGT
GTGAACAGTTCCTTGACTTTCAAAAGTTATCTTAATTAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp363 aa451136+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGSRRTEIKRHLPEEEIDEMLREAEDDHHLRRIGFIKNLYQGDTIPEAADREGRSAATGTRWAEDWNEGGFEELMPSFGGGRPPKLDEDEQEELVEMLRD
GQPWKSQEIQHLLQAEFGVSYSPNYLGTFLRELGLSYAKPRPKRPHRPENPDEILEERVDDALDEDDQPHNKREGEDEEGWIVEDDTCTDGGTVLGFFDA
SKPQLYDNSRRVWYVDDPHIERELVKAHDSAVGFYALNGESLVTFTEDEEKERICGVLEKIREQNTDKRILLVLDKHGLHRCEYTRKRAHQLGIDLIFIP
SGSPHLNPIEQVWDYLKWTMAPIVVENEAEFKDLVQKTFEKITKRISFARKWCEQFLDFQKLS

 

Blast result :
Comments
ISHam1 is 86% aa similar to ISHwa7.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.