ISHti3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF571520 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B |
DNA section
IS Length : 1400 bp
Ends
Left end : AGCGGTACAGCGCGGAAGCCCACCCGTTCACGGGTGGGAGGAAGCGCGTAAGCTCCGTGGGGCAAACCACCGACGATGGCAGGGCGGACTCCCCAACGCT II struct. : Yes
Right end : GGGACATTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGAGGGGATAGA | TCAC | TTGTACAGGCTC | tgac |
AGACGGGCCAGA | TCAC | TGTCCCCACCCG | tgac |
DNA sequence
AGCGGTACAGCGCGGAAGCCCACCCGTTCACGGGTGGGAGGAAGCGCGTAAGCTCCGTGGGGCAAACCACCGACGATGGCAGGGCGGACTCCCCAACGCT
GACACAGAATATATAAACAAGGCGTCCGTATGTGAGAGTGTGATGGAAGTCAAACGCACCGTTCCCGTCAAACTCGATGTGCCCGAGGAGCGGCGCGACG
ACCTCCAGCAGACCATCCAGCAGTTCAACACCGCCGCCAACTACACTATCGACCACGGTAAAGGCGACGACGGCGACCTGATTCTCAACAAGTCCACCAT
CCACGACGAAGTGTACCACGACCTCCGGGACGAAACCGACCTCCCCGCAAACCTCGTGGTGCGGGCCTACTCGAAGGCCGTCGAAGCGATGAAAAGCACC
GTCACGGAGTGGGAGAAGGGCAACAGCCGCCCACTCCCCTCGTTCGATGAACCATCCGCAGTCTACGACAAGCGCACGCTAACCATCAAAGACGAGTACG
CCACGCTCTCGACGGTCAACGGGCGCGTCGAAGCCGCCTTCGTGCTTGGCGAGTACCAGCGGTCGTACCTCGAAGACGACGACTACGAGAAGCGGATGGG
GACGCTCCACTACCGTCCCGACGAGGATACGTTCTACCTCCACATCGTCATTCAGAAGGAGGTAGACCAGCGTGATGGCGACCGTGTGCTTGGTGTGGAC
TTGAACCTGAAGAACGTCGCCGTGACCAGCACGGGACAGTTCTTCGACGGTGGCGAACTGCTGTGGGGACAGAACCACTATTTCCGCGTGAGACGGAGCC
TTCAGGACAAAGGCACCCGTTCCGCTCGGCAGGCGTTACGGCGACTGTCGGGACGGGAAAACCGCTTCGTCCTGAACCGCCTGCACAATATCTCGCGTGG
AATCGTGGAGGAAGCCCTGCGCCACGACTGTTCGTACATCACCGTCGAAGACTTGACCCACATCCGCGAGCGAATGGACGCCCACAACGAGCGCCTGAAG
CGGCAGATGCACAACTGGGCGTTCCGCGAACTTCAAGAGCAAATTGCGTACAAGGCCGCCGAGTACGGTATCCGCGTTGAGTCGGTCAACCCTGCCTTTT
CTTCGCAGACCTGCTCGAAGTGCGGCCACCAGTCCAGTACGAACCGCGACGGCGCAACGGGCTGGTTCGCGTGCAACGAGTGTGGGTACGAAGTAGACGG
CGACTACAACGCGGCGAAAAACGTCGGCCTCCGTCTGTTAGCTTTACCATCGGGCAAACGTCCCGGTGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTCG
GGGACATTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC
GACACAGAATATATAAACAAGGCGTCCGTATGTGAGAGTGTGATGGAAGTCAAACGCACCGTTCCCGTCAAACTCGATGTGCCCGAGGAGCGGCGCGACG
ACCTCCAGCAGACCATCCAGCAGTTCAACACCGCCGCCAACTACACTATCGACCACGGTAAAGGCGACGACGGCGACCTGATTCTCAACAAGTCCACCAT
CCACGACGAAGTGTACCACGACCTCCGGGACGAAACCGACCTCCCCGCAAACCTCGTGGTGCGGGCCTACTCGAAGGCCGTCGAAGCGATGAAAAGCACC
GTCACGGAGTGGGAGAAGGGCAACAGCCGCCCACTCCCCTCGTTCGATGAACCATCCGCAGTCTACGACAAGCGCACGCTAACCATCAAAGACGAGTACG
CCACGCTCTCGACGGTCAACGGGCGCGTCGAAGCCGCCTTCGTGCTTGGCGAGTACCAGCGGTCGTACCTCGAAGACGACGACTACGAGAAGCGGATGGG
GACGCTCCACTACCGTCCCGACGAGGATACGTTCTACCTCCACATCGTCATTCAGAAGGAGGTAGACCAGCGTGATGGCGACCGTGTGCTTGGTGTGGAC
TTGAACCTGAAGAACGTCGCCGTGACCAGCACGGGACAGTTCTTCGACGGTGGCGAACTGCTGTGGGGACAGAACCACTATTTCCGCGTGAGACGGAGCC
TTCAGGACAAAGGCACCCGTTCCGCTCGGCAGGCGTTACGGCGACTGTCGGGACGGGAAAACCGCTTCGTCCTGAACCGCCTGCACAATATCTCGCGTGG
AATCGTGGAGGAAGCCCTGCGCCACGACTGTTCGTACATCACCGTCGAAGACTTGACCCACATCCGCGAGCGAATGGACGCCCACAACGAGCGCCTGAAG
CGGCAGATGCACAACTGGGCGTTCCGCGAACTTCAAGAGCAAATTGCGTACAAGGCCGCCGAGTACGGTATCCGCGTTGAGTCGGTCAACCCTGCCTTTT
CTTCGCAGACCTGCTCGAAGTGCGGCCACCAGTCCAGTACGAACCGCGACGGCGCAACGGGCTGGTTCGCGTGCAACGAGTGTGGGTACGAAGTAGACGG
CGACTACAACGCGGCGAAAAACGTCGGCCTCCGTCTGTTAGCTTTACCATCGGGCAAACGTCCCGGTGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTCG
GGGACATTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 143 | 1399 | + | No |
AG : TnpB
ORF sequence :
MEVKRTVPVKLDVPEERRDDLQQTIQQFNTAANYTIDHGKGDDGDLILNKSTIHDEVYHDLRDETDLPANLVVRAYSKAVEAMKSTVTEWEKGNSRPLPS
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEAAFVLGEYQRSYLEDDDYEKRMGTLHYRPDEDTFYLHIVIQKEVDQRDGDRVLGVDLNLKNVAVTSTGQF
FDGGELLWGQNHYFRVRRSLQDKGTRSARQALRRLSGRENRFVLNRLHNISRGIVEEALRHDCSYITVEDLTHIRERMDAHNERLKRQMHNWAFRELQEQ
IAYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDGATGWFACNECGYEVDGDYNAAKNVGLRLLALPSGKRPGGLGNGQLALKSGTLNVSDVSNVHSS
LEFERESTDKPTASAVGS
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEAAFVLGEYQRSYLEDDDYEKRMGTLHYRPDEDTFYLHIVIQKEVDQRDGDRVLGVDLNLKNVAVTSTGQF
FDGGELLWGQNHYFRVRRSLQDKGTRSARQALRRLSGRENRFVLNRLHNISRGIVEEALRHDCSYITVEDLTHIRERMDAHNERLKRQMHNWAFRELQEQ
IAYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDGATGWFACNECGYEVDGDYNAAKNVGLRLLALPSGKRPGGLGNGQLALKSGTLNVSDVSNVHSS
LEFERESTDKPTASAVGS
Blast result :
Comments
ISHti3 is 96% (TnpB) aa similar to ISHhu4.
The two copies are disrupted by an insertion of ISHti4.
The two copies are disrupted by an insertion of ISHti4.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)