ISHti3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF571520 ND Halorhabdus tiamatea
Halorhabdus tiamatea SARL4B
DNA section
IS Length : 1400 bp

Ends


Left end : AGCGGTACAGCGCGGAAGCCCACCCGTTCACGGGTGGGAGGAAGCGCGTAAGCTCCGTGGGGCAAACCACCGACGATGGCAGGGCGGACTCCCCAACGCT II struct. : Yes
Right end : GGGACATTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGAGGGGATAGATCACTTGTACAGGCTCtgac
AGACGGGCCAGATCACTGTCCCCACCCGtgac

DNA sequence

AGCGGTACAGCGCGGAAGCCCACCCGTTCACGGGTGGGAGGAAGCGCGTAAGCTCCGTGGGGCAAACCACCGACGATGGCAGGGCGGACTCCCCAACGCT
GACACAGAATATATAAACAAGGCGTCCGTATGTGAGAGTGTGATGGAAGTCAAACGCACCGTTCCCGTCAAACTCGATGTGCCCGAGGAGCGGCGCGACG
ACCTCCAGCAGACCATCCAGCAGTTCAACACCGCCGCCAACTACACTATCGACCACGGTAAAGGCGACGACGGCGACCTGATTCTCAACAAGTCCACCAT
CCACGACGAAGTGTACCACGACCTCCGGGACGAAACCGACCTCCCCGCAAACCTCGTGGTGCGGGCCTACTCGAAGGCCGTCGAAGCGATGAAAAGCACC
GTCACGGAGTGGGAGAAGGGCAACAGCCGCCCACTCCCCTCGTTCGATGAACCATCCGCAGTCTACGACAAGCGCACGCTAACCATCAAAGACGAGTACG
CCACGCTCTCGACGGTCAACGGGCGCGTCGAAGCCGCCTTCGTGCTTGGCGAGTACCAGCGGTCGTACCTCGAAGACGACGACTACGAGAAGCGGATGGG
GACGCTCCACTACCGTCCCGACGAGGATACGTTCTACCTCCACATCGTCATTCAGAAGGAGGTAGACCAGCGTGATGGCGACCGTGTGCTTGGTGTGGAC
TTGAACCTGAAGAACGTCGCCGTGACCAGCACGGGACAGTTCTTCGACGGTGGCGAACTGCTGTGGGGACAGAACCACTATTTCCGCGTGAGACGGAGCC
TTCAGGACAAAGGCACCCGTTCCGCTCGGCAGGCGTTACGGCGACTGTCGGGACGGGAAAACCGCTTCGTCCTGAACCGCCTGCACAATATCTCGCGTGG
AATCGTGGAGGAAGCCCTGCGCCACGACTGTTCGTACATCACCGTCGAAGACTTGACCCACATCCGCGAGCGAATGGACGCCCACAACGAGCGCCTGAAG
CGGCAGATGCACAACTGGGCGTTCCGCGAACTTCAAGAGCAAATTGCGTACAAGGCCGCCGAGTACGGTATCCGCGTTGAGTCGGTCAACCCTGCCTTTT
CTTCGCAGACCTGCTCGAAGTGCGGCCACCAGTCCAGTACGAACCGCGACGGCGCAACGGGCTGGTTCGCGTGCAACGAGTGTGGGTACGAAGTAGACGG
CGACTACAACGCGGCGAAAAACGTCGGCCTCCGTCTGTTAGCTTTACCATCGGGCAAACGTCCCGGTGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTCG
GGGACATTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1431399+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVKRTVPVKLDVPEERRDDLQQTIQQFNTAANYTIDHGKGDDGDLILNKSTIHDEVYHDLRDETDLPANLVVRAYSKAVEAMKSTVTEWEKGNSRPLPS
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEAAFVLGEYQRSYLEDDDYEKRMGTLHYRPDEDTFYLHIVIQKEVDQRDGDRVLGVDLNLKNVAVTSTGQF
FDGGELLWGQNHYFRVRRSLQDKGTRSARQALRRLSGRENRFVLNRLHNISRGIVEEALRHDCSYITVEDLTHIRERMDAHNERLKRQMHNWAFRELQEQ
IAYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDGATGWFACNECGYEVDGDYNAAKNVGLRLLALPSGKRPGGLGNGQLALKSGTLNVSDVSNVHSS
LEFERESTDKPTASAVGS

 

Blast result :
Comments
ISHti3 is 96% (TnpB) aa similar to ISHhu4.
The two copies are disrupted by an insertion of ISHti4.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)