ISNma25

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099
DNA section
IS Length : 1648 bp

Ends


Left end : CCTGACTCAAGGAGAGAGTCCCCGCCCTTTAGGGCGGGCGTGAATCCGACACTCCACGTCACAATCCACGCTCGACGATTACTCCGGGGTATCCTCCCGG II struct. : Yes
Right end : CGATACCCCCCAGCGCGAGGAAACCCCGCCGTCGTCGGGCCTCGCCCGACTGCCTGCGGGATCTTCGATCCCGCTCTGTTCACGGCAGGGAGGATGTCAT II struct. : No
Comments : There is an insertion into RE.

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGCACCCAACAGCTAAGCGGCCGCGCCtcat

DNA sequence

CCTGACTCAAGGAGAGAGTCCCCGCCCTTTAGGGCGGGCGTGAATCCGACACTCCACGTCACAATCCACGCTCGACGATTACTCCGGGGTATCCTCCCGG
ACTTTCTTTTCGCCCTCAAGGAGCAATCCCTTCCACGTCAACCCGCGGTGCTTCTTCAGTTCTTTCAACCGCTCGTACTGTTCATCGTCATCGAACTCGA
TGCGGACTTCGACCATACAGCAACACATAAACCACATATTTATGTGTGTTCCGATACAAACAGTAGTCGATGAAGCGAGCCAACACGTTCGAGGTGATTC
CGCAGTCCGACGAGGACGAGGAGTTGCTTCGACGCCTGTTGGACGCTTCTGCCGCTCTCTGGAACGAAATCAACTATGAGCGCCGCGAGAACTATGCTGA
CCCAGACGGAGACGTGTGGGATATTAGCGAGTATCGCGGTCGCTATGGCGGTGTTCTCGGCGCGTCCACGGTTCAGCAAATCGAACGCAAGAACCGCGAA
GCGTGGAAGTCGTTCTTCAGCCTCAAGAAGAAGGGCGAAGCCAACGGAAAACCCGGATTCTGGGGTAACGTAGACGAAGGTCGAGAACTCCGCACGTACA
TCCGAAACACGTCGTACTCCGTCGAGTGGGGCGAATACTCCCGCCTCGAAATTCTCGTCGGTCAAGACCTGAAAAACGAATACGGGTTGGGACACCGCGA
ACGTCTCCGCCTTGAAGTTCGAGGCGACCCCAATTGGAAGGAGTACGAGAACCAGGGTCGGTTGGAGTTGTTCTACGACGAGCAAGCACAGACATTCAGG
GCCTTTCAGCCAGTCACCGTCGATGATTCTCGACTGGCACAACCACTGGCTTCGGAAGAAGCCGCTCTGGATATTGGTGCGAACAACCTCGTCGCCTGCA
CAACCACAACCGGCCAGCAATATCTGTACGAAGGACGCGACCTGTTCAAACGATTCCGCGAGACGACGCGAGAAATCGCCCGCCTCCAATCACTCTTGGA
GGACGGTCGATACAGCAGTCACCGAATCCGACGCCTGTACGACCGGCGCACCAAGCGACGTGACCACGCTCAAGACGCACTCGCGCGTGACCTCATCGAA
CATCTGTACGACGAGGGTGTTTCGACAGTGTACGTCGGGGCGCTGACGGACGTGCTTGAGACGCACTGGTCGGTAGAGACGAACGCCAAGACGCACAACT
TCTGGGCGTTTAGAGCGTTCGTGAATCGACTGGCGTGTACCGCTGAGGAATACGGTATCTCGGTGGAAGTGCGGTCTGAGGCGTGGACGAGTCAGGAGTG
TCCGAACTGCGGTTCGACAGAGGACACGACACGTCACAGAGACACTCTGATGTGTCCGTGTGGCTTCGAGGGGCACGCCGACCTCGTGGCGTCAGAGACG
TTCCTTCGGCGGCAGACAACAGTAACACGGTCGATGGCACGGCCTGTATGCCTCAAGTGGGACAACCATGAATGGTTGGAGTCATCACGCTCTCCCCGTC
CCAACGAGGAGCATACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAGTCGATACCCCCCAGCGCGAGGAAACCCCGCCGTCGTCGGGCCTCGCCCGACTG
CCTGCGGGATCTTCGATCCCGCTCTGTTCACGGCAGGGAGGATGTCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp425 aa2701547+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRANTFEVIPQSDEDEELLRRLLDASAALWNEINYERRENYADPDGDVWDISEYRGRYGGVLGASTVQQIERKNREAWKSFFSLKKKGEANGKPGFWGN
VDEGRELRTYIRNTSYSVEWGEYSRLEILVGQDLKNEYGLGHRERLRLEVRGDPNWKEYENQGRLELFYDEQAQTFRAFQPVTVDDSRLAQPLASEEAAL
DIGANNLVACTTTTGQQYLYEGRDLFKRFRETTREIARLQSLLEDGRYSSHRIRRLYDRRTKRRDHAQDALARDLIEHLYDEGVSTVYVGALTDVLETHW
SVETNAKTHNFWAFRAFVNRLACTAEEYGISVEVRSEAWTSQECPNCGSTEDTTRHRDTLMCPCGFEGHADLVASETFLRRQTTVTRSMARPVCLKWDNH
EWLESSRSPRPNEEHTNPQVASVGR

 

Blast result :
Comments
ISNma25 is 93% (TnpB) aa similar to ISHbo8.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165