ISNma24

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099
DNA section
IS Length : 1544 bp

Ends


Left end : ACAGATTGCTAGCGCATACCTGCGTCTTCAGGCGCAGGTCGAGCGATAGGCAGTGATTGTCCGTTTTCGGAGTGACGCTGCGGTGGATTTCCATCCTTTA II struct. : Yes
Right end : GACGCATGGAACGAATGCGTCTTGAAACCAACAGGCCACTTCGCTCGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AACGTCTACAGTTACCGGCCAACCtcaa
CGTGGTCACCTCTGATTGTGGGTGtcaa

DNA sequence

ACAGATTGCTAGCGCATACCTGCGTCTTCAGGCGCAGGTCGAGCGATAGGCAGTGATTGTCCGTTTTCGGAGTGACGCTGCGGTGGATTTCCATCCTTTA
CTTTCACTCCGCATGGCTGACGTATATCGTGTCCTGTGCCGTATTGATGGGTACAGAACGGATGCCTGAAGTCACGAAGACGCTCGAGTTGCGCCTCGTC
GACCCCAATGCTCACAAGGAGCGCAAGCTCTGTGAGACTCGTGAGGCATATCAGCAGGCACTTCAGGCAGCCTTCGACGCCGACTGCACCACCCAGTCAG
CCACAAACGACATTGTTGTCGAGTACGACCTTTCCGGCTACGCTAAAAACGCCCTCAAGCAGTACGTCCCGCAACTCTGTGGCGGCAGCTACGATACCGA
CGAACTTCACGACGACCATCCGGTGAAGTTTACCAACGAAGGTGTTCAACTCGACCACAAGCCACAGAACTCCCTCGAGTGGTACATCAAAATTCCCCAT
CACGACGATTACCACCTCTGGATCCCGGCACACGCCAATCCAGACCAGCGGGATTGGCTGGAAGCAGTGTATGCTGGTGATGTCGAGATGGGTGAAAGTC
GGCTCCTCGAGCGGGATGGGACGTGGTATCTCCACATCACCGCCACCCGCGACGTAGAGGAACAATCTGCGACGTCTGCCAACGAGCGGACCCCGCCAGA
CTCGTCTGGCGAGCCCTGTCTCGTTGGGCTCGACAGGACGCCGATCGGCGTCGACATCGGAGAAGCGAGTCTCGTCACGGTGTGTCACCGCGATGAGAGT
GGCTCTCCGGTTCGCCCCAAACTGTGGGCCAACGACGGCAAAACCGTCCGGAGGCTCCGCAAAACCTACTTCACCGCCAAGCGACGGCTTCAGAGACGTG
GCAGTGAGCGAATCGCGGAGTCCTACGGCGAATCGCTGTGGAACCGGATTGACCACGTGGTCCACCGGGTAACTCGCGAGGTCGTTGAATACGCCGAGTC
CGTCGAGAACCCGGTGCTGGTACTGGAAGACCTGACGTACATCCGCGAGAACATGGACTACGGCGCGTACATGAACCGGCGGTTACATGGATGGGGCTTT
GCGAAGCTCCACGCACAGATTCGGTACAAAGCCGCCGAGAAGGGGATTCCCGTCGAGACGGTGAATCCCCGGAACACGTCGAAAGAATGCCACGCCTGTG
GTAAGGTCGGCTCTCGACCACGACAGGCGACGTTCCGCTGTTCGAACGACGACTGTTGGGTCACAGAATACCAGGCTGACGTGAACGGGGCGATGAATAT
CGCAGACCGCTACCGTAGTGGAGAGAGCCACCGCCAAAGCGACCGGACTTCCCGGCAGAAGGCTGGTGACGATGACTCGGCTACGGATGGGGCCTCATTG
ACCGGGCCACAAGACAGCCATGCCGATGCTGAACCCCAGCAGGTGACGCATGGAACGAATGCGTCTTGAAACCAACAGGCCACTTCGCTCGGCCTGAAAT
CCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1621469+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MPEVTKTLELRLVDPNAHKERKLCETREAYQQALQAAFDADCTTQSATNDIVVEYDLSGYAKNALKQYVPQLCGGSYDTDELHDDHPVKFTNEGVQLDHK
PQNSLEWYIKIPHHDDYHLWIPAHANPDQRDWLEAVYAGDVEMGESRLLERDGTWYLHITATRDVEEQSATSANERTPPDSSGEPCLVGLDRTPIGVDIG
EASLVTVCHRDESGSPVRPKLWANDGKTVRRLRKTYFTAKRRLQRRGSERIAESYGESLWNRIDHVVHRVTREVVEYAESVENPVLVLEDLTYIRENMDY
GAYMNRRLHGWGFAKLHAQIRYKAAEKGIPVETVNPRNTSKECHACGKVGSRPRQATFRCSNDDCWVTEYQADVNGAMNIADRYRSGESHRQSDRTSRQK
AGDDDSATDGASLTGPQDSHADAEPQQVTHGTNAS

 

Blast result :
Comments
ISNma24 is 88% (TnpB) aa similar to ISNma12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165