ISBdi2
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 |
DNA section
IS Length : 1622 bp
Ends
IR Length : 12/19
IRL : CCTGTCTTATTCGTAAGAGGCGCCCGAGAGGCTGGCGAGCGTGGTGTAAA
IRR : CCCGATCTATTCACGAGAGCACGGTCGTTCTTGACGTCTGACGGGGGCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCGACTAAG | CTAG | GATGGCGACA | 4 |
DNA sequence
CCTGTCTTATTCGTAAGAGGCGCCCGAGAGGCTGGCGAGCGTGGTGTAAAGCGCTGATACGGCGTAGGATTCGGTTGTGAAGCCAACCCCATCACCTCCA
ACCGCGAACGCCACGCCCGCCATGACCGACGATACGATTCCGCCCTTCTCGTTTCCAGCCATTCACGCCAAGAAAGTCACAGCTGCCTTCGATGGTGGGC
GCCTAACCTCGAACGGGGGCGTGATGCTTCTGGCGATGGCCGAGCGGCGTCTCGGCTTGGCCGACAATCTGGCCCGGGTGTTCCCGGATCGGCGCGATCC
GACGCGGGTCGTGCACAGCCTGGTCGATATGTTCCGCGCGCGCATGTTCGCGATCTGCTGCGGCTACGAGGACGCCGACGACCTCGATCATCTGCGGTCC
GATCCGGCATTCAAGCTGGCCTGCGGTCGCCTACCGGACACGGGCCGGGATCTGTGTTCCCAGCCGACGCTGTCGCGGCTGGAGAATGCTCCGCGCCTGC
GCGACGTGATCCGACTGACCTACATTTTGGTCGACGCATGGATGGATAGCTACCCCCACGAGCCGGCATCCGTCACGCTCGACATCGATGATACCTGCGA
CGTCGTCCACGGCCATCAGCAGCTCTCGCTGTTCAACGCTCATTATGACGAACGCTGCTTTCTGCCGATCCACGTCTACGACACGGAGAAGAGCCGGCCC
GTGGCCGTCGTGCTGCGGCCCGGCAAGACGCCGGGCGGCGTCGAGGTGCGTGCCCATCTGCGCCGCCTGGTACGGCATATCCGCACGCGATGGCACAACA
CGCGAATTACGTTCCGTGGCGACGGGCACTATGCCCGGCCGGAGGCCATGGCGTGGTGCGAGACCAACGGCATCGACTACATCTTCGGTCTGTCCGGCAC
CAAGCCTCTCGCCAGAAAAGTCGACGAGGTCGCCGACGACATCCGCACCCGACGCGCCATCGAGAACCTGCCGGTTCTGCGTGGCTATACCGAGACCCGC
CACAAGGCAAAGTCCTGGGATCGCGAACGGCGCACCGTCGCCCGTATTGAGGCGACGATGCTCGGCCTCGACATCCGTTTCGTCGTCACCAGCCTCGATG
TCGGCTCGGCCGAGTGGATCTACGACAGCCTGTATTGCGCGCGCGGCCAAGCAGAGAATCTGATCAAGCTGCATAAGACACAGCTCGCCTCCGACCGCAC
CAGCTGCCGTTCGGCGCTCGCCAACCAGGTCCGTCTCGTGCTCCATACGGCCGCTTATTGGCTGATGCTGACCGTGCGCGACGCCATTCCCAAAGCCCGG
GAATTGGCCACTGCCGAGTTCGCGACGCTGCGTCTTCGTCTCTTGAAACTCGCTGCCCGTGTGGTCGAGACCACGAGCCGCATTCGCCTTGCGTTTGCCG
CGGCATGTCCCGAAGCCGACCTGATCCGCGGCTTGCCCGGCGCGCTGCTCCCGCTCGGTCCGTAACCGACCGGGCCTGCGCCCGCTCACCCGCCCCACTC
CTCCATCGCCTACAAAACAGCTTGATGTAGAACCCGGTGAGAAAAGGCCGGACGGTCACCCACGCCAGCCGCCAGCCCCCGTCAGACGTCAAGAACGACC
GTGCTCTCGTGAATAGATCGGG
ACCGCGAACGCCACGCCCGCCATGACCGACGATACGATTCCGCCCTTCTCGTTTCCAGCCATTCACGCCAAGAAAGTCACAGCTGCCTTCGATGGTGGGC
GCCTAACCTCGAACGGGGGCGTGATGCTTCTGGCGATGGCCGAGCGGCGTCTCGGCTTGGCCGACAATCTGGCCCGGGTGTTCCCGGATCGGCGCGATCC
GACGCGGGTCGTGCACAGCCTGGTCGATATGTTCCGCGCGCGCATGTTCGCGATCTGCTGCGGCTACGAGGACGCCGACGACCTCGATCATCTGCGGTCC
GATCCGGCATTCAAGCTGGCCTGCGGTCGCCTACCGGACACGGGCCGGGATCTGTGTTCCCAGCCGACGCTGTCGCGGCTGGAGAATGCTCCGCGCCTGC
GCGACGTGATCCGACTGACCTACATTTTGGTCGACGCATGGATGGATAGCTACCCCCACGAGCCGGCATCCGTCACGCTCGACATCGATGATACCTGCGA
CGTCGTCCACGGCCATCAGCAGCTCTCGCTGTTCAACGCTCATTATGACGAACGCTGCTTTCTGCCGATCCACGTCTACGACACGGAGAAGAGCCGGCCC
GTGGCCGTCGTGCTGCGGCCCGGCAAGACGCCGGGCGGCGTCGAGGTGCGTGCCCATCTGCGCCGCCTGGTACGGCATATCCGCACGCGATGGCACAACA
CGCGAATTACGTTCCGTGGCGACGGGCACTATGCCCGGCCGGAGGCCATGGCGTGGTGCGAGACCAACGGCATCGACTACATCTTCGGTCTGTCCGGCAC
CAAGCCTCTCGCCAGAAAAGTCGACGAGGTCGCCGACGACATCCGCACCCGACGCGCCATCGAGAACCTGCCGGTTCTGCGTGGCTATACCGAGACCCGC
CACAAGGCAAAGTCCTGGGATCGCGAACGGCGCACCGTCGCCCGTATTGAGGCGACGATGCTCGGCCTCGACATCCGTTTCGTCGTCACCAGCCTCGATG
TCGGCTCGGCCGAGTGGATCTACGACAGCCTGTATTGCGCGCGCGGCCAAGCAGAGAATCTGATCAAGCTGCATAAGACACAGCTCGCCTCCGACCGCAC
CAGCTGCCGTTCGGCGCTCGCCAACCAGGTCCGTCTCGTGCTCCATACGGCCGCTTATTGGCTGATGCTGACCGTGCGCGACGCCATTCCCAAAGCCCGG
GAATTGGCCACTGCCGAGTTCGCGACGCTGCGTCTTCGTCTCTTGAAACTCGCTGCCCGTGTGGTCGAGACCACGAGCCGCATTCGCCTTGCGTTTGCCG
CGGCATGTCCCGAAGCCGACCTGATCCGCGGCTTGCCCGGCGCGCTGCTCCCGCTCGGTCCGTAACCGACCGGGCCTGCGCCCGCTCACCCGCCCCACTC
CTCCATCGCCTACAAAACAGCTTGATGTAGAACCCGGTGAGAAAAGGCCGGACGGTCACCCACGCCAGCCGCCAGCCCCCGTCAGACGTCAAGAACGACC
GTGCTCTCGTGAATAGATCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 447 aa | 122 | 1465 | + | No |
Chemistry : DDE
ORF sequence :
MTDDTIPPFSFPAIHAKKVTAAFDGGRLTSNGGVMLLAMAERRLGLADNLARVFPDRRDPTRVVHSLVDMFRARMFAICCGYEDADDLDHLRSDPAFKLA
CGRLPDTGRDLCSQPTLSRLENAPRLRDVIRLTYILVDAWMDSYPHEPASVTLDIDDTCDVVHGHQQLSLFNAHYDERCFLPIHVYDTEKSRPVAVVLRP
GKTPGGVEVRAHLRRLVRHIRTRWHNTRITFRGDGHYARPEAMAWCETNGIDYIFGLSGTKPLARKVDEVADDIRTRRAIENLPVLRGYTETRHKAKSWD
RERRTVARIEATMLGLDIRFVVTSLDVGSAEWIYDSLYCARGQAENLIKLHKTQLASDRTSCRSALANQVRLVLHTAAYWLMLTVRDAIPKARELATAEF
ATLRLRLLKLAARVVETTSRIRLAFAAACPEADLIRGLPGALLPLGP
CGRLPDTGRDLCSQPTLSRLENAPRLRDVIRLTYILVDAWMDSYPHEPASVTLDIDDTCDVVHGHQQLSLFNAHYDERCFLPIHVYDTEKSRPVAVVLRP
GKTPGGVEVRAHLRRLVRHIRTRWHNTRITFRGDGHYARPEAMAWCETNGIDYIFGLSGTKPLARKVDEVADDIRTRRAIENLPVLRGYTETRHKAKSWD
RERRTVARIEATMLGLDIRFVVTSLDVGSAEWIYDSLYCARGQAENLIKLHKTQLASDRTSCRSALANQVRLVLHTAAYWLMLTVRDAIPKARELATAEF
ATLRLRLLKLAARVVETTSRIRLAFAAACPEADLIRGLPGALLPLGP
Blast result :
Comments
ISBdi2 is 96% aa similar to ISNha3.
References
1] ISfinder annotation (2015)