ISBdi2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
DNA section
IS Length : 1622 bp

Ends


IR Length : 12/19

IRL : CCTGTCTTATTCGTAAGAGGCGCCCGAGAGGCTGGCGAGCGTGGTGTAAA
IRR : CCCGATCTATTCACGAGAGCACGGTCGTTCTTGACGTCTGACGGGGGCTG

Insertion site


Left flankDirect repeatRight flankDR Length
ATCGACTAAGCTAGGATGGCGACA4

DNA sequence

CCTGTCTTATTCGTAAGAGGCGCCCGAGAGGCTGGCGAGCGTGGTGTAAAGCGCTGATACGGCGTAGGATTCGGTTGTGAAGCCAACCCCATCACCTCCA
ACCGCGAACGCCACGCCCGCCATGACCGACGATACGATTCCGCCCTTCTCGTTTCCAGCCATTCACGCCAAGAAAGTCACAGCTGCCTTCGATGGTGGGC
GCCTAACCTCGAACGGGGGCGTGATGCTTCTGGCGATGGCCGAGCGGCGTCTCGGCTTGGCCGACAATCTGGCCCGGGTGTTCCCGGATCGGCGCGATCC
GACGCGGGTCGTGCACAGCCTGGTCGATATGTTCCGCGCGCGCATGTTCGCGATCTGCTGCGGCTACGAGGACGCCGACGACCTCGATCATCTGCGGTCC
GATCCGGCATTCAAGCTGGCCTGCGGTCGCCTACCGGACACGGGCCGGGATCTGTGTTCCCAGCCGACGCTGTCGCGGCTGGAGAATGCTCCGCGCCTGC
GCGACGTGATCCGACTGACCTACATTTTGGTCGACGCATGGATGGATAGCTACCCCCACGAGCCGGCATCCGTCACGCTCGACATCGATGATACCTGCGA
CGTCGTCCACGGCCATCAGCAGCTCTCGCTGTTCAACGCTCATTATGACGAACGCTGCTTTCTGCCGATCCACGTCTACGACACGGAGAAGAGCCGGCCC
GTGGCCGTCGTGCTGCGGCCCGGCAAGACGCCGGGCGGCGTCGAGGTGCGTGCCCATCTGCGCCGCCTGGTACGGCATATCCGCACGCGATGGCACAACA
CGCGAATTACGTTCCGTGGCGACGGGCACTATGCCCGGCCGGAGGCCATGGCGTGGTGCGAGACCAACGGCATCGACTACATCTTCGGTCTGTCCGGCAC
CAAGCCTCTCGCCAGAAAAGTCGACGAGGTCGCCGACGACATCCGCACCCGACGCGCCATCGAGAACCTGCCGGTTCTGCGTGGCTATACCGAGACCCGC
CACAAGGCAAAGTCCTGGGATCGCGAACGGCGCACCGTCGCCCGTATTGAGGCGACGATGCTCGGCCTCGACATCCGTTTCGTCGTCACCAGCCTCGATG
TCGGCTCGGCCGAGTGGATCTACGACAGCCTGTATTGCGCGCGCGGCCAAGCAGAGAATCTGATCAAGCTGCATAAGACACAGCTCGCCTCCGACCGCAC
CAGCTGCCGTTCGGCGCTCGCCAACCAGGTCCGTCTCGTGCTCCATACGGCCGCTTATTGGCTGATGCTGACCGTGCGCGACGCCATTCCCAAAGCCCGG
GAATTGGCCACTGCCGAGTTCGCGACGCTGCGTCTTCGTCTCTTGAAACTCGCTGCCCGTGTGGTCGAGACCACGAGCCGCATTCGCCTTGCGTTTGCCG
CGGCATGTCCCGAAGCCGACCTGATCCGCGGCTTGCCCGGCGCGCTGCTCCCGCTCGGTCCGTAACCGACCGGGCCTGCGCCCGCTCACCCGCCCCACTC
CTCCATCGCCTACAAAACAGCTTGATGTAGAACCCGGTGAGAAAAGGCCGGACGGTCACCCACGCCAGCCGCCAGCCCCCGTCAGACGTCAAGAACGACC
GTGCTCTCGTGAATAGATCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1344 bp447 aa1221465+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDDTIPPFSFPAIHAKKVTAAFDGGRLTSNGGVMLLAMAERRLGLADNLARVFPDRRDPTRVVHSLVDMFRARMFAICCGYEDADDLDHLRSDPAFKLA
CGRLPDTGRDLCSQPTLSRLENAPRLRDVIRLTYILVDAWMDSYPHEPASVTLDIDDTCDVVHGHQQLSLFNAHYDERCFLPIHVYDTEKSRPVAVVLRP
GKTPGGVEVRAHLRRLVRHIRTRWHNTRITFRGDGHYARPEAMAWCETNGIDYIFGLSGTKPLARKVDEVADDIRTRRAIENLPVLRGYTETRHKAKSWD
RERRTVARIEATMLGLDIRFVVTSLDVGSAEWIYDSLYCARGQAENLIKLHKTQLASDRTSCRSALANQVRLVLHTAAYWLMLTVRDAIPKARELATAEF
ATLRLRLLKLAARVVETTSRIRLAFAAACPEADLIRGLPGALLPLGP

 

Blast result :
Comments
ISBdi2 is 96% aa similar to ISNha3.
References
1] ISfinder annotation (2015)