ISHti4
- Family IS4
- Group IS50
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| HF571520 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B |
DNA section
IS Length : 1662 bp
Ends
IR Length : 18/20
IRL : CTGTCTCTTACCCACAAGTCCTAATCGAGGAGCTGACGAACCAAGACTGG
IRR : CTGTCTCTTACCCATAACTCGATACTATAGCGTAAGTTCAACCAGATCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTCACTCCCC | ATTTTCAACC | CTGATAACCC | 10 |
| GGAAGCCCAC | CCGTTCACGG | GTGGGAGGAA | 10 |
| GCTAACCCAC | GGCTAAAGCC | GTGGGCTTTC | 10 |
| AGCTACCCAC | cGCTGAAGCg/gGCTGAAGCc | GTGGGCTTCC | 21 |
| AGCTACCCAC | CGCTGAAGCG | GTGGGCTTGT | 10 |
DNA sequence
CTGTCTCTTACCCACAAGTCCTAATCGAGGAGCTGACGAACCAAGACTGGTAGATGGGACGCCGCTCACGGAGTTGGAAGCCAGAACTCGATGAGGATGG
ACAGCTGTGTGACATGGATGTTTCCGGGTGGATTCGAGCGGAGTTTCGGTCAGCTGAGTTTGGAGACAAGCGCCTGACTGACCGATTGGTTCAACTTGGG
GATGAACTCGGCAGCTCACCTGCCGAGTCCATCCCCGCTGCCTGCGGAGACTGGGCCTCCACAAAAGCTACATACCGATTTTGCGATAATGACAGTGTGG
ACCCCAACGAGGTTCTCTCTGCTCACAAGCAGCAACAGCAATCAAGAGTGAGTCGGTCAGACGAACTCTTGATTGTCTCCGATACCACCGAACTCGTGTT
TCCGAGACATCCCTCCAAAGAGGGCCTCGGCGACATTGGCAATTCTGAAATGGATCTCGAAGGCGTCAAGCTACACTCCACGATCGGAATCAATCCACGC
ACCCATCGGATGACTGGAGTCATCGATCAGCAGGCGCTGATCGAGGACCAGCAGGCTGGTGAGAAGTACGATGCCAACGGCAAAGCAGAGCCGATTCAAC
TTGACAATGAGCATGAGAAGTGGAGCCGTGGCGACAGGCAAGCCAGAGACTGGCTTGCCGACGATATCCGCCCGCTGTTCATTCATGACCGAGGCGCAGA
TTCATTCGCGTTCTACGAAGAAGTCACCGGAGAGATGGAAAGTGCTGGCTTTATCGTCCGAGCGAATCAAAACCGGCGGATTTGGACTGATGATGGTGAA
CCTGAAAAACTCTTTGACTGGAGCAGCGACCTTGCCGAGCAAGGTCGCAAAACAATCGAGATTCAACAGGGAGGTGGGCGCGAAGCGAGAACGGTGGAGT
TGTCGATAGCCACTGGAACGTGTGAGTTGCGCGCACCAAGGAATAATCCTGAGCAAGAGGGTTCAATCGAGGCGAATGTCGTGAGAGTCGACGAGGTCGG
TGAAAATGACGACCCGATTCAGTGGGTGTTGCTCACCACTGAATCGGTCGAAGAGTTTGAAGAGACACTGACACTCATCGACTATTACGGCCTCCGCTGG
CGAATTGAAGACTGGCATAAAGTGCTCAAGAGTGGCTGTAACATCGAAGAACGGCAACTGCAGACTTGGGAGCGGATGGAAGTTCTGTTGAGCATGTATT
CAGTAATCGCGTGGAAAGTTCTGGAGTTACGAGAACTTGCCCGTGGTGATAGTTCAGTATCTCCGGCGGTCCTGCTGAGTGAGGCAGAGTGCACAATTCT
GGAAACGAAATTTCCAGAATTGAGCGACCAAGATGGAAAATCATACGCAGTGAGCGTCGCTAAACTCGGCGGTTATCTTGATCGTGGTTCAGATCCGCCA
CCAGGGTGGGAGACGATGTGGAAAGGACTCCAGAAGCTACGCATGTGGGCTGAAGGATACGAACTCGGTGCTGAATGAGCGCGCTTCGCGGCTCATTCAG
CGGAACCCGTCGAAATAACGAGTTCAACTGAGCTTTTCACGCGGCTTCATCGAGACCTCTCTAATCTTGGGCAGATACTGATAGAGATTTGATTGATTTC
TTCTTCTCATGCCTGATCTGGTTGAACTTACGCTATAGTATCGAGTTATGGGTAAGAGACAG
ACAGCTGTGTGACATGGATGTTTCCGGGTGGATTCGAGCGGAGTTTCGGTCAGCTGAGTTTGGAGACAAGCGCCTGACTGACCGATTGGTTCAACTTGGG
GATGAACTCGGCAGCTCACCTGCCGAGTCCATCCCCGCTGCCTGCGGAGACTGGGCCTCCACAAAAGCTACATACCGATTTTGCGATAATGACAGTGTGG
ACCCCAACGAGGTTCTCTCTGCTCACAAGCAGCAACAGCAATCAAGAGTGAGTCGGTCAGACGAACTCTTGATTGTCTCCGATACCACCGAACTCGTGTT
TCCGAGACATCCCTCCAAAGAGGGCCTCGGCGACATTGGCAATTCTGAAATGGATCTCGAAGGCGTCAAGCTACACTCCACGATCGGAATCAATCCACGC
ACCCATCGGATGACTGGAGTCATCGATCAGCAGGCGCTGATCGAGGACCAGCAGGCTGGTGAGAAGTACGATGCCAACGGCAAAGCAGAGCCGATTCAAC
TTGACAATGAGCATGAGAAGTGGAGCCGTGGCGACAGGCAAGCCAGAGACTGGCTTGCCGACGATATCCGCCCGCTGTTCATTCATGACCGAGGCGCAGA
TTCATTCGCGTTCTACGAAGAAGTCACCGGAGAGATGGAAAGTGCTGGCTTTATCGTCCGAGCGAATCAAAACCGGCGGATTTGGACTGATGATGGTGAA
CCTGAAAAACTCTTTGACTGGAGCAGCGACCTTGCCGAGCAAGGTCGCAAAACAATCGAGATTCAACAGGGAGGTGGGCGCGAAGCGAGAACGGTGGAGT
TGTCGATAGCCACTGGAACGTGTGAGTTGCGCGCACCAAGGAATAATCCTGAGCAAGAGGGTTCAATCGAGGCGAATGTCGTGAGAGTCGACGAGGTCGG
TGAAAATGACGACCCGATTCAGTGGGTGTTGCTCACCACTGAATCGGTCGAAGAGTTTGAAGAGACACTGACACTCATCGACTATTACGGCCTCCGCTGG
CGAATTGAAGACTGGCATAAAGTGCTCAAGAGTGGCTGTAACATCGAAGAACGGCAACTGCAGACTTGGGAGCGGATGGAAGTTCTGTTGAGCATGTATT
CAGTAATCGCGTGGAAAGTTCTGGAGTTACGAGAACTTGCCCGTGGTGATAGTTCAGTATCTCCGGCGGTCCTGCTGAGTGAGGCAGAGTGCACAATTCT
GGAAACGAAATTTCCAGAATTGAGCGACCAAGATGGAAAATCATACGCAGTGAGCGTCGCTAAACTCGGCGGTTATCTTGATCGTGGTTCAGATCCGCCA
CCAGGGTGGGAGACGATGTGGAAAGGACTCCAGAAGCTACGCATGTGGGCTGAAGGATACGAACTCGGTGCTGAATGAGCGCGCTTCGCGGCTCATTCAG
CGGAACCCGTCGAAATAACGAGTTCAACTGAGCTTTTCACGCGGCTTCATCGAGACCTCTCTAATCTTGGGCAGATACTGATAGAGATTTGATTGATTTC
TTCTTCTCATGCCTGATCTGGTTGAACTTACGCTATAGTATCGAGTTATGGGTAAGAGACAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1425 bp | 474 aa | 54 | 1478 | + | No |
Chemistry : DDE
ORF sequence :
MGRRSRSWKPELDEDGQLCDMDVSGWIRAEFRSAEFGDKRLTDRLVQLGDELGSSPAESIPAACGDWASTKATYRFCDNDSVDPNEVLSAHKQQQQSRVS
RSDELLIVSDTTELVFPRHPSKEGLGDIGNSEMDLEGVKLHSTIGINPRTHRMTGVIDQQALIEDQQAGEKYDANGKAEPIQLDNEHEKWSRGDRQARDW
LADDIRPLFIHDRGADSFAFYEEVTGEMESAGFIVRANQNRRIWTDDGEPEKLFDWSSDLAEQGRKTIEIQQGGGREARTVELSIATGTCELRAPRNNPE
QEGSIEANVVRVDEVGENDDPIQWVLLTTESVEEFEETLTLIDYYGLRWRIEDWHKVLKSGCNIEERQLQTWERMEVLLSMYSVIAWKVLELRELARGDS
SVSPAVLLSEAECTILETKFPELSDQDGKSYAVSVAKLGGYLDRGSDPPPGWETMWKGLQKLRMWAEGYELGAE
RSDELLIVSDTTELVFPRHPSKEGLGDIGNSEMDLEGVKLHSTIGINPRTHRMTGVIDQQALIEDQQAGEKYDANGKAEPIQLDNEHEKWSRGDRQARDW
LADDIRPLFIHDRGADSFAFYEEVTGEMESAGFIVRANQNRRIWTDDGEPEKLFDWSSDLAEQGRKTIEIQQGGGREARTVELSIATGTCELRAPRNNPE
QEGSIEANVVRVDEVGENDDPIQWVLLTTESVEEFEETLTLIDYYGLRWRIEDWHKVLKSGCNIEERQLQTWERMEVLLSMYSVIAWKVLELRELARGDS
SVSPAVLLSEAECTILETKFPELSDQDGKSYAVSVAKLGGYLDRGSDPPPGWETMWKGLQKLRMWAEGYELGAE
Blast result :
Comments
ISHti4 is 96% aa similar to ISHwa2.
References
1] Pfeiffer F. (2015) Direct submission to ISfinder
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)
2] Werner,J., Ferrer,M., Michel,G., Mann,A.J., Huang,S., Juarez,S., Ciordia,S., Albar,J.P., Alcaide,M., La Cono,V., Yakimov,M.M., Antunes,A., Taborda,M., da Costa,M.S., Hai,T., Glockner,F.O., Golyshina,O.V., Golyshin,P.N. and Teeling,H. (2014) Environ. Microbiol (in press)