ISNma23
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001934 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 pNMAG02 |
DNA section
IS Length : 1524 bp
Ends
Left end : AGAAAATCAAGGAGAAAGCCCACGAGTTTAGTCGTGGGATGAATCCGACATCCCACGTCATCAACAACACTCAATGGCGGGCCTGAGTCTCCCACGCTAA II struct. : Yes
Right end : GAGTACCACCGTGGGTGGGAATGTCGCTGTCGGGGAATCTCAGGACGACTGAGACTCCCACGAAAGGAATCCCACGACTTCAGTCGTGGGTAGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GATTCTCCCGAC | TTAC | GCCAATACGGTA | tcaa |
DNA sequence
AGAAAATCAAGGAGAAAGCCCACGAGTTTAGTCGTGGGATGAATCCGACATCCCACGTCATCAACAACACTCAATGGCGGGCCTGAGTCTCCCACGCTAA
CGCATATCTTTACAAACAAACACTTCGTAGACGGTGATATGAAGCGAGCCAACCGGTTCAACGTTCGCCCTCGCTCTGCGAAAGAGCGCGAGGTGTTCGT
TCGTTGGTTGGACGCTTCTGCGAGTCTCTGGAACGAGACAAACTACACTCGCCGCCAAAACTTCCTCGAAGACGATGAAAGCATCTGGGACGCCGACACC
GGTAGTCTCGAAGGTAAGTACAAGGGTGTCCTCAGCAGTTCCGTCGCCCAGCAGATCATCCGCAAAAACTCCGAAGCGTGGCGGTCATTCCTCTCGCTCA
ACGAAAAGTACCACGCCGGGAAACTCAACGAGAAGCCGTCTCCACCCGGATACTGGGGCAGCAAAGACGATGGGCGGGTACTCCGCACGTACGTTCGCAA
CGACCAGTACACCATAGAGTACGGCGAACGTTCCCGACTTGAAGTCCCGATCGGCTCCGAACTCAAAGACGAACTTGGGTTGAATCGGAACCAACGCCTC
CGCGTTGAAGTTGCTGGTGAGCCGAAATGGAGCGGCGAGCAGAACCGGCTTGAAATTGTGTACGACGAAACCGCAGATACGTTCAGGGCTTTCCAACCAG
TCACCGTGCCTGATTCTCGACTGGACTCACCACTGGCTTCCCACGAAGCCGCCTTGGACGTGGGCGTGAACAACCTCGTCGCCTGCACAACAACGACCGG
CTTTCAATTCCTGTTCGAAGGACGTAACCTGTTCGAGCAGTTCCGGAAAACCACGGAACGTATCGCACACTACCAGTCACTCCTCGAAAACCAGCGTGAG
TCGAGCAAGCGCATCGACCGCTTGTATCGCAAGCGCACAAACCGGCGGAACCACGCCCAAGACACCCTCGTCCGCGAGCTCACGGAACGTCTGTACGACG
AGGGCGTTTCGACGCTGTACGTCGGGGACATCAAGGGCGTGCTTTCGACGCACTGGTCGCCGTGTGTGAACGAAAAGACGCACAACTTCTGGGCGTACCG
CCGGTTTATCAACCGCCTCGAAGACGTGTGTGAGGAGTACGGTATCACGGTCAACGAGGTATCTGAAGCGTGGACAACTCAGATGTGTCCCGAATGTGGC
GAGCACAAAGGGACTATTCGTCACGAGGATTCGCTGGCGTGTCCGTGCGGATTCGAGGGGCACGCTGACCTCGTCGCATCGGAATCGTTCCTGAGACGGC
AGAACACCGAAGTCGGGTCGATGGCACGGCCCGTGTATCTCAAGTGGAACAATCACAACTGGCGGGAACATCACAACCCGCCCTCCCTAGTGGAGACAAC
GGCTAACGAGGCGTACACAGACCAGAGTACCACCGTGGGTGGGAATGTCGCTGTCGGGGAATCTCAGGACGACTGAGACTCCCACGAAAGGAATCCCACG
ACTTCAGTCGTGGGTAGATGTCAA
CGCATATCTTTACAAACAAACACTTCGTAGACGGTGATATGAAGCGAGCCAACCGGTTCAACGTTCGCCCTCGCTCTGCGAAAGAGCGCGAGGTGTTCGT
TCGTTGGTTGGACGCTTCTGCGAGTCTCTGGAACGAGACAAACTACACTCGCCGCCAAAACTTCCTCGAAGACGATGAAAGCATCTGGGACGCCGACACC
GGTAGTCTCGAAGGTAAGTACAAGGGTGTCCTCAGCAGTTCCGTCGCCCAGCAGATCATCCGCAAAAACTCCGAAGCGTGGCGGTCATTCCTCTCGCTCA
ACGAAAAGTACCACGCCGGGAAACTCAACGAGAAGCCGTCTCCACCCGGATACTGGGGCAGCAAAGACGATGGGCGGGTACTCCGCACGTACGTTCGCAA
CGACCAGTACACCATAGAGTACGGCGAACGTTCCCGACTTGAAGTCCCGATCGGCTCCGAACTCAAAGACGAACTTGGGTTGAATCGGAACCAACGCCTC
CGCGTTGAAGTTGCTGGTGAGCCGAAATGGAGCGGCGAGCAGAACCGGCTTGAAATTGTGTACGACGAAACCGCAGATACGTTCAGGGCTTTCCAACCAG
TCACCGTGCCTGATTCTCGACTGGACTCACCACTGGCTTCCCACGAAGCCGCCTTGGACGTGGGCGTGAACAACCTCGTCGCCTGCACAACAACGACCGG
CTTTCAATTCCTGTTCGAAGGACGTAACCTGTTCGAGCAGTTCCGGAAAACCACGGAACGTATCGCACACTACCAGTCACTCCTCGAAAACCAGCGTGAG
TCGAGCAAGCGCATCGACCGCTTGTATCGCAAGCGCACAAACCGGCGGAACCACGCCCAAGACACCCTCGTCCGCGAGCTCACGGAACGTCTGTACGACG
AGGGCGTTTCGACGCTGTACGTCGGGGACATCAAGGGCGTGCTTTCGACGCACTGGTCGCCGTGTGTGAACGAAAAGACGCACAACTTCTGGGCGTACCG
CCGGTTTATCAACCGCCTCGAAGACGTGTGTGAGGAGTACGGTATCACGGTCAACGAGGTATCTGAAGCGTGGACAACTCAGATGTGTCCCGAATGTGGC
GAGCACAAAGGGACTATTCGTCACGAGGATTCGCTGGCGTGTCCGTGCGGATTCGAGGGGCACGCTGACCTCGTCGCATCGGAATCGTTCCTGAGACGGC
AGAACACCGAAGTCGGGTCGATGGCACGGCCCGTGTATCTCAAGTGGAACAATCACAACTGGCGGGAACATCACAACCCGCCCTCCCTAGTGGAGACAAC
GGCTAACGAGGCGTACACAGACCAGAGTACCACCGTGGGTGGGAATGTCGCTGTCGGGGAATCTCAGGACGACTGAGACTCCCACGAAAGGAATCCCACG
ACTTCAGTCGTGGGTAGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 139 | 1476 | + | No |
AG : TnpB
ORF sequence :
MKRANRFNVRPRSAKEREVFVRWLDASASLWNETNYTRRQNFLEDDESIWDADTGSLEGKYKGVLSSSVAQQIIRKNSEAWRSFLSLNEKYHAGKLNEKP
SPPGYWGSKDDGRVLRTYVRNDQYTIEYGERSRLEVPIGSELKDELGLNRNQRLRVEVAGEPKWSGEQNRLEIVYDETADTFRAFQPVTVPDSRLDSPLA
SHEAALDVGVNNLVACTTTTGFQFLFEGRNLFEQFRKTTERIAHYQSLLENQRESSKRIDRLYRKRTNRRNHAQDTLVRELTERLYDEGVSTLYVGDIKG
VLSTHWSPCVNEKTHNFWAYRRFINRLEDVCEEYGITVNEVSEAWTTQMCPECGEHKGTIRHEDSLACPCGFEGHADLVASESFLRRQNTEVGSMARPVY
LKWNNHNWREHHNPPSLVETTANEAYTDQSTTVGGNVAVGESQDD
SPPGYWGSKDDGRVLRTYVRNDQYTIEYGERSRLEVPIGSELKDELGLNRNQRLRVEVAGEPKWSGEQNRLEIVYDETADTFRAFQPVTVPDSRLDSPLA
SHEAALDVGVNNLVACTTTTGFQFLFEGRNLFEQFRKTTERIAHYQSLLENQRESSKRIDRLYRKRTNRRNHAQDTLVRELTERLYDEGVSTLYVGDIKG
VLSTHWSPCVNEKTHNFWAYRRFINRLEDVCEEYGITVNEVSEAWTTQMCPECGEHKGTIRHEDSLACPCGFEGHADLVASESFLRRQNTEVGSMARPVY
LKWNNHNWREHHNPPSLVETTANEAYTDQSTTVGGNVAVGESQDD
Blast result :
Comments
ISNma23 is 90% (TnpB) aa similar to ISHru1.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165