ISNma23

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001934 ND Natrialba magadii
Natrialba magadii ATCC 43099 pNMAG02
DNA section
IS Length : 1524 bp

Ends


Left end : AGAAAATCAAGGAGAAAGCCCACGAGTTTAGTCGTGGGATGAATCCGACATCCCACGTCATCAACAACACTCAATGGCGGGCCTGAGTCTCCCACGCTAA II struct. : Yes
Right end : GAGTACCACCGTGGGTGGGAATGTCGCTGTCGGGGAATCTCAGGACGACTGAGACTCCCACGAAAGGAATCCCACGACTTCAGTCGTGGGTAGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GATTCTCCCGACTTACGCCAATACGGTAtcaa

DNA sequence

AGAAAATCAAGGAGAAAGCCCACGAGTTTAGTCGTGGGATGAATCCGACATCCCACGTCATCAACAACACTCAATGGCGGGCCTGAGTCTCCCACGCTAA
CGCATATCTTTACAAACAAACACTTCGTAGACGGTGATATGAAGCGAGCCAACCGGTTCAACGTTCGCCCTCGCTCTGCGAAAGAGCGCGAGGTGTTCGT
TCGTTGGTTGGACGCTTCTGCGAGTCTCTGGAACGAGACAAACTACACTCGCCGCCAAAACTTCCTCGAAGACGATGAAAGCATCTGGGACGCCGACACC
GGTAGTCTCGAAGGTAAGTACAAGGGTGTCCTCAGCAGTTCCGTCGCCCAGCAGATCATCCGCAAAAACTCCGAAGCGTGGCGGTCATTCCTCTCGCTCA
ACGAAAAGTACCACGCCGGGAAACTCAACGAGAAGCCGTCTCCACCCGGATACTGGGGCAGCAAAGACGATGGGCGGGTACTCCGCACGTACGTTCGCAA
CGACCAGTACACCATAGAGTACGGCGAACGTTCCCGACTTGAAGTCCCGATCGGCTCCGAACTCAAAGACGAACTTGGGTTGAATCGGAACCAACGCCTC
CGCGTTGAAGTTGCTGGTGAGCCGAAATGGAGCGGCGAGCAGAACCGGCTTGAAATTGTGTACGACGAAACCGCAGATACGTTCAGGGCTTTCCAACCAG
TCACCGTGCCTGATTCTCGACTGGACTCACCACTGGCTTCCCACGAAGCCGCCTTGGACGTGGGCGTGAACAACCTCGTCGCCTGCACAACAACGACCGG
CTTTCAATTCCTGTTCGAAGGACGTAACCTGTTCGAGCAGTTCCGGAAAACCACGGAACGTATCGCACACTACCAGTCACTCCTCGAAAACCAGCGTGAG
TCGAGCAAGCGCATCGACCGCTTGTATCGCAAGCGCACAAACCGGCGGAACCACGCCCAAGACACCCTCGTCCGCGAGCTCACGGAACGTCTGTACGACG
AGGGCGTTTCGACGCTGTACGTCGGGGACATCAAGGGCGTGCTTTCGACGCACTGGTCGCCGTGTGTGAACGAAAAGACGCACAACTTCTGGGCGTACCG
CCGGTTTATCAACCGCCTCGAAGACGTGTGTGAGGAGTACGGTATCACGGTCAACGAGGTATCTGAAGCGTGGACAACTCAGATGTGTCCCGAATGTGGC
GAGCACAAAGGGACTATTCGTCACGAGGATTCGCTGGCGTGTCCGTGCGGATTCGAGGGGCACGCTGACCTCGTCGCATCGGAATCGTTCCTGAGACGGC
AGAACACCGAAGTCGGGTCGATGGCACGGCCCGTGTATCTCAAGTGGAACAATCACAACTGGCGGGAACATCACAACCCGCCCTCCCTAGTGGAGACAAC
GGCTAACGAGGCGTACACAGACCAGAGTACCACCGTGGGTGGGAATGTCGCTGTCGGGGAATCTCAGGACGACTGAGACTCCCACGAAAGGAATCCCACG
ACTTCAGTCGTGGGTAGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa1391476+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRANRFNVRPRSAKEREVFVRWLDASASLWNETNYTRRQNFLEDDESIWDADTGSLEGKYKGVLSSSVAQQIIRKNSEAWRSFLSLNEKYHAGKLNEKP
SPPGYWGSKDDGRVLRTYVRNDQYTIEYGERSRLEVPIGSELKDELGLNRNQRLRVEVAGEPKWSGEQNRLEIVYDETADTFRAFQPVTVPDSRLDSPLA
SHEAALDVGVNNLVACTTTTGFQFLFEGRNLFEQFRKTTERIAHYQSLLENQRESSKRIDRLYRKRTNRRNHAQDTLVRELTERLYDEGVSTLYVGDIKG
VLSTHWSPCVNEKTHNFWAYRRFINRLEDVCEEYGITVNEVSEAWTTQMCPECGEHKGTIRHEDSLACPCGFEGHADLVASESFLRRQNTEVGSMARPVY
LKWNNHNWREHHNPPSLVETTANEAYTDQSTTVGGNVAVGESQDD

 

Blast result :
Comments
ISNma23 is 90% (TnpB) aa similar to ISHru1.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165