ISNma21
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001932 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 |
DNA section
IS Length : 1548 bp
Ends
Left end : CTAATTTCAGGCGCTAAGCCCCCGTCCTCAAGGAGCGACCAAAGGGAGCGAGTAGGGCGGGGATACAGCGCCGTCTTCGCCTTTTTCACCTTCCTGTTGC II struct. : Yes
Right end : CTACGGGAACTGCGGTTGTTCCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCCGCCAACGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGTCGTTTGGTT | TTAG | TTCCGGTTCCAG | tcac |
DNA sequence
CTAATTTCAGGCGCTAAGCCCCCGTCCTCAAGGAGCGACCAAAGGGAGCGAGTAGGGCGGGGATACAGCGCCGTCTTCGCCTTTTTCACCTTCCTGTTGC
TGGCCCACAGGCCCACGAACCGATACAGTTATGCACATACTGCGTATAATACACACCGTGGAACGGAAGAACATCACAATCCGTGAAGATCAAGCTGAGT
GGGTCGAGGAGAACCACTTGAATCTCTCCTCGTTCGTCCAAGAGAAACTGGACGAGCTTATCGAACAACGTGAGGGATAACTGATGCACTACGCCTACAG
GTTCCGGCTCAAACCAACCGCCGAACAGCGTGAAACGCTGGACCATCACCGCGATACCTGTAGGCAACTCTACAACCACGCTCTCAGGGATTTTAACAAG
ATTCCCGACTCGGCAGGAACGCTCAACCAACGAGTGCGACAGGTCCGCGATCAACTCACCGACCTGAAAGACTGGTGGGATGAACTGAATGACCTGTACT
CAACGGTTGCACAGGCCGCAGTCATGCGGATTGAAGACAGTATCACGGCACTATCTGAACTGAAAGAAAAGGGGTACAACGTCGGGAGTCTCAACTGGAA
GGCACCGAGAGAGTTCCGCAGTTTCACATACGTCCAGTCTGGCTTCGAGTTCGACAAGAAGAACGGTCAGACTGTCCTCTCGTTGTCGAAACTCGCGGAT
ATACCGATTGAGTGTCACCGACAAATCCCCGAAGATGAAACAGTCAAAGAAGTCACGCTCAAGAAAGAACCAACTGGAGAGTGGTACGCCTCATTCACCG
TTGATGATAAAGATGAACCTGCCAAACCGTCGCTGGAGGATGTTGACGCGGACGAGATGGTTGGCATCGACGTGGGAATTCTGAAGTATGCCCACGACAC
TGACGGCACGGCAGTTGGTTCACTTGACCTCTCGGAAGACCGCGACAGGCTTGAACGGGAGCAACGAAACCTCTCGCGCAAAGAGCACGGGTCGAACAAC
TGGGAAAAACAGCGGCAGGCAGTTGCCGAGTGTCATCTCGACATCAAGCGCAAGCGGCGTGACTTCCTGCACACACTCTCGAACTATTACGCTCGGGAGT
ACGATCTCGTGGCCGTTGAAGACCTTGACGTGAAAGGGATGCTCGAATCGCCGCGCAACAGTCGCAATACGGCGTCAGCGGCGTGGAGCACTTTCACCGA
TATGCTCGAATACAAGTGCGAGCGAGAAGGCACGCACTTCGTGGATGTTGACCCTGACGGCACCACCAAAGAGTGCGCCCAGTGTGGCGTCAAAACCGAC
AAACCGCTCTGGGTGCGTGAACATTCTTGTCCGGCCTGTGGGTTCGAGGTGGACAGAGACGCAAACGCAGCGTGGAACGTTCTTTCTCGCGGACTCTCGA
AACTAGGAGTCGGTCACTCCGAATTAACGCCTGTGGAGACTGCGCTCCCTACGGGAACTGCGGTTGTTCCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCC
CTGCCTCAAGGAGCCGCCAACGGCGGCGAGTAGGCAGGGGTAGTTCAC
TGGCCCACAGGCCCACGAACCGATACAGTTATGCACATACTGCGTATAATACACACCGTGGAACGGAAGAACATCACAATCCGTGAAGATCAAGCTGAGT
GGGTCGAGGAGAACCACTTGAATCTCTCCTCGTTCGTCCAAGAGAAACTGGACGAGCTTATCGAACAACGTGAGGGATAACTGATGCACTACGCCTACAG
GTTCCGGCTCAAACCAACCGCCGAACAGCGTGAAACGCTGGACCATCACCGCGATACCTGTAGGCAACTCTACAACCACGCTCTCAGGGATTTTAACAAG
ATTCCCGACTCGGCAGGAACGCTCAACCAACGAGTGCGACAGGTCCGCGATCAACTCACCGACCTGAAAGACTGGTGGGATGAACTGAATGACCTGTACT
CAACGGTTGCACAGGCCGCAGTCATGCGGATTGAAGACAGTATCACGGCACTATCTGAACTGAAAGAAAAGGGGTACAACGTCGGGAGTCTCAACTGGAA
GGCACCGAGAGAGTTCCGCAGTTTCACATACGTCCAGTCTGGCTTCGAGTTCGACAAGAAGAACGGTCAGACTGTCCTCTCGTTGTCGAAACTCGCGGAT
ATACCGATTGAGTGTCACCGACAAATCCCCGAAGATGAAACAGTCAAAGAAGTCACGCTCAAGAAAGAACCAACTGGAGAGTGGTACGCCTCATTCACCG
TTGATGATAAAGATGAACCTGCCAAACCGTCGCTGGAGGATGTTGACGCGGACGAGATGGTTGGCATCGACGTGGGAATTCTGAAGTATGCCCACGACAC
TGACGGCACGGCAGTTGGTTCACTTGACCTCTCGGAAGACCGCGACAGGCTTGAACGGGAGCAACGAAACCTCTCGCGCAAAGAGCACGGGTCGAACAAC
TGGGAAAAACAGCGGCAGGCAGTTGCCGAGTGTCATCTCGACATCAAGCGCAAGCGGCGTGACTTCCTGCACACACTCTCGAACTATTACGCTCGGGAGT
ACGATCTCGTGGCCGTTGAAGACCTTGACGTGAAAGGGATGCTCGAATCGCCGCGCAACAGTCGCAATACGGCGTCAGCGGCGTGGAGCACTTTCACCGA
TATGCTCGAATACAAGTGCGAGCGAGAAGGCACGCACTTCGTGGATGTTGACCCTGACGGCACCACCAAAGAGTGCGCCCAGTGTGGCGTCAAAACCGAC
AAACCGCTCTGGGTGCGTGAACATTCTTGTCCGGCCTGTGGGTTCGAGGTGGACAGAGACGCAAACGCAGCGTGGAACGTTCTTTCTCGCGGACTCTCGA
AACTAGGAGTCGGTCACTCCGAATTAACGCCTGTGGAGACTGCGCTCCCTACGGGAACTGCGGTTGTTCCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCC
CTGCCTCAAGGAGCCGCCAACGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
150 bp | 49 aa | 131 | 280 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MHILRIIHTVERKNITIREDQAEWVEENHLNLSSFVQEKLDELIEQREG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 284 | 1543 | + | No |
AG : TnpB
ORF sequence :
MHYAYRFRLKPTAEQRETLDHHRDTCRQLYNHALRDFNKIPDSAGTLNQRVRQVRDQLTDLKDWWDELNDLYSTVAQAAVMRIEDSITALSELKEKGYNV
GSLNWKAPREFRSFTYVQSGFEFDKKNGQTVLSLSKLADIPIECHRQIPEDETVKEVTLKKEPTGEWYASFTVDDKDEPAKPSLEDVDADEMVGIDVGIL
KYAHDTDGTAVGSLDLSEDRDRLEREQRNLSRKEHGSNNWEKQRQAVAECHLDIKRKRRDFLHTLSNYYAREYDLVAVEDLDVKGMLESPRNSRNTASAA
WSTFTDMLEYKCEREGTHFVDVDPDGTTKECAQCGVKTDKPLWVREHSCPACGFEVDRDANAAWNVLSRGLSKLGVGHSELTPVETALPTGTAVVPAKRV
VEAGSPCLKEPPTAASRQG
GSLNWKAPREFRSFTYVQSGFEFDKKNGQTVLSLSKLADIPIECHRQIPEDETVKEVTLKKEPTGEWYASFTVDDKDEPAKPSLEDVDADEMVGIDVGIL
KYAHDTDGTAVGSLDLSEDRDRLEREQRNLSRKEHGSNNWEKQRQAVAECHLDIKRKRRDFLHTLSNYYAREYDLVAVEDLDVKGMLESPRNSRNTASAA
WSTFTDMLEYKCEREGTHFVDVDPDGTTKECAQCGVKTDKPLWVREHSCPACGFEVDRDANAAWNVLSRGLSKLGVGHSELTPVETALPTGTAVVPAKRV
VEAGSPCLKEPPTAASRQG
Blast result :
Comments
ISNma21 is 85% (TnpB) aa similar to ISHli13. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165