ISNma21

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099
DNA section
IS Length : 1548 bp

Ends


Left end : CTAATTTCAGGCGCTAAGCCCCCGTCCTCAAGGAGCGACCAAAGGGAGCGAGTAGGGCGGGGATACAGCGCCGTCTTCGCCTTTTTCACCTTCCTGTTGC II struct. : Yes
Right end : CTACGGGAACTGCGGTTGTTCCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCCGCCAACGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGTCGTTTGGTTTTAGTTCCGGTTCCAGtcac

DNA sequence

CTAATTTCAGGCGCTAAGCCCCCGTCCTCAAGGAGCGACCAAAGGGAGCGAGTAGGGCGGGGATACAGCGCCGTCTTCGCCTTTTTCACCTTCCTGTTGC
TGGCCCACAGGCCCACGAACCGATACAGTTATGCACATACTGCGTATAATACACACCGTGGAACGGAAGAACATCACAATCCGTGAAGATCAAGCTGAGT
GGGTCGAGGAGAACCACTTGAATCTCTCCTCGTTCGTCCAAGAGAAACTGGACGAGCTTATCGAACAACGTGAGGGATAACTGATGCACTACGCCTACAG
GTTCCGGCTCAAACCAACCGCCGAACAGCGTGAAACGCTGGACCATCACCGCGATACCTGTAGGCAACTCTACAACCACGCTCTCAGGGATTTTAACAAG
ATTCCCGACTCGGCAGGAACGCTCAACCAACGAGTGCGACAGGTCCGCGATCAACTCACCGACCTGAAAGACTGGTGGGATGAACTGAATGACCTGTACT
CAACGGTTGCACAGGCCGCAGTCATGCGGATTGAAGACAGTATCACGGCACTATCTGAACTGAAAGAAAAGGGGTACAACGTCGGGAGTCTCAACTGGAA
GGCACCGAGAGAGTTCCGCAGTTTCACATACGTCCAGTCTGGCTTCGAGTTCGACAAGAAGAACGGTCAGACTGTCCTCTCGTTGTCGAAACTCGCGGAT
ATACCGATTGAGTGTCACCGACAAATCCCCGAAGATGAAACAGTCAAAGAAGTCACGCTCAAGAAAGAACCAACTGGAGAGTGGTACGCCTCATTCACCG
TTGATGATAAAGATGAACCTGCCAAACCGTCGCTGGAGGATGTTGACGCGGACGAGATGGTTGGCATCGACGTGGGAATTCTGAAGTATGCCCACGACAC
TGACGGCACGGCAGTTGGTTCACTTGACCTCTCGGAAGACCGCGACAGGCTTGAACGGGAGCAACGAAACCTCTCGCGCAAAGAGCACGGGTCGAACAAC
TGGGAAAAACAGCGGCAGGCAGTTGCCGAGTGTCATCTCGACATCAAGCGCAAGCGGCGTGACTTCCTGCACACACTCTCGAACTATTACGCTCGGGAGT
ACGATCTCGTGGCCGTTGAAGACCTTGACGTGAAAGGGATGCTCGAATCGCCGCGCAACAGTCGCAATACGGCGTCAGCGGCGTGGAGCACTTTCACCGA
TATGCTCGAATACAAGTGCGAGCGAGAAGGCACGCACTTCGTGGATGTTGACCCTGACGGCACCACCAAAGAGTGCGCCCAGTGTGGCGTCAAAACCGAC
AAACCGCTCTGGGTGCGTGAACATTCTTGTCCGGCCTGTGGGTTCGAGGTGGACAGAGACGCAAACGCAGCGTGGAACGTTCTTTCTCGCGGACTCTCGA
AACTAGGAGTCGGTCACTCCGAATTAACGCCTGTGGAGACTGCGCTCCCTACGGGAACTGCGGTTGTTCCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCC
CTGCCTCAAGGAGCCGCCAACGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
150 bp49 aa131280+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MHILRIIHTVERKNITIREDQAEWVEENHLNLSSFVQEKLDELIEQREG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1260 bp419 aa2841543+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MHYAYRFRLKPTAEQRETLDHHRDTCRQLYNHALRDFNKIPDSAGTLNQRVRQVRDQLTDLKDWWDELNDLYSTVAQAAVMRIEDSITALSELKEKGYNV
GSLNWKAPREFRSFTYVQSGFEFDKKNGQTVLSLSKLADIPIECHRQIPEDETVKEVTLKKEPTGEWYASFTVDDKDEPAKPSLEDVDADEMVGIDVGIL
KYAHDTDGTAVGSLDLSEDRDRLEREQRNLSRKEHGSNNWEKQRQAVAECHLDIKRKRRDFLHTLSNYYAREYDLVAVEDLDVKGMLESPRNSRNTASAA
WSTFTDMLEYKCEREGTHFVDVDPDGTTKECAQCGVKTDKPLWVREHSCPACGFEVDRDANAAWNVLSRGLSKLGVGHSELTPVETALPTGTAVVPAKRV
VEAGSPCLKEPPTAASRQG

 

Blast result :
Comments
ISNma21 is 85% (TnpB) aa similar to ISHli13. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165