ISNma19
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001932 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 |
DNA section
IS Length : 1576 bp
Ends
Left end : AGAATTTCAAGGCGAATACACCCGCCTTCCCGTGAGGTGGGGATGTTCCGACGACTGTCGGAACCGAGTGACGAACAGGCGGGTGATGAAGCCGACACGG II struct. : Yes
Right end : CCAACCTCGGACAGAGGTGGTAGACTCTAAACCATAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACTATCGCACCC | TTAT | TAATACGATCGA | tcaa |
DNA sequence
AGAATTTCAAGGCGAATACACCCGCCTTCCCGTGAGGTGGGGATGTTCCGACGACTGTCGGAACCGAGTGACGAACAGGCGGGTGATGAAGCCGACACGG
TGAGCAACAATCCACCGGTTACACCACGGCTGGATATTCCACGCTGACCACAATCTTTACATTTCAATAGAGTATAAGTACTTATAGAGACGTTCCACAA
TGCTGGACATTCACCGAACACACAAAGCGAAAATCTGCAACCATTCACAGGTCGCAGACTCGCTTGACCGGCACGGGTGGAGTGCCAGCAAGCTCTGGAA
CGTCGCCAACTACCACTCCCGAGACGTCTGGGAGGAAACGGGCGAGATTCCTGACCACGAGGAGCTGAAAGACGAGTTGAAGACCCATCCAAAGTACAAG
GGACTCCATTCGCAGTCCAGTCAGCGGGTTCTGGAGGAACTCGCTGAAGCCTTCAACTCGTGGTACTCTAGTGACGATGACAGGGACAATCCGCCCGGCT
ACCGCAAAGAAAACTACTATGACGACCAGGGCCGCCGCGTCCACGAAGAACATCCGCGCTCCACCGTGACGTGGAAGCAAAACGGCATCAAACACGACAC
CAAGAACAACCGCGTCAGGCTCTCCAAGGGCGCGAATCACAAAGAACACCCGAAAGCGTGGGAATACATCCTTGTCGAATACGAGACACGCCCCGGTGTC
ACGATCGAAAACCTACAACAAGTCAGGGCCGTCTACGACAGTGCAACGGAACGCTGGGAGCTGCACCTCGTCTGCAAAGACGAAATCGAGACTCCCGACG
CTCCCGGCACTGAGACAGCGGGTATCGACCTCGGCATCAGCAACTTTGCCGCCGTCGCCTACAGCACCGAAGACGCCGATCTCTACCCCGGCAACCGCTT
GAAACAGGACGGCTACTACTTCCCGAAGGAAATCGCCAACTGCGGCAATTCTGGTGGCGACGAAGCCACGCGACTCCACCACAAGTGGTCGGAGCGCCGG
ACTCACTTCTTCCACTCCGTAGCGAAGCACATCGTCGAACGGTGTGTCGAGAAAGGAGTTGGCCGCATCAACGTCGGGGACTTGGAAGGAGTCCGTGAAG
ACGAAGATGGTGAGTCGAAAAACTGGGGTCGGCACGGTAACCTTGACCTGCACGGATGGGCGTTCGATCGCTTCAGCTTGATTCTCGAATACAAGGCGAA
GGTTGAGGGAATCGAAGTCGTAGAGGTTTCAGAACGTGACACGAGCAAGACGTGTTGTGTCTGCGGGAGAGAAGACGATAGTCAGCGTGTTGAACGTGGC
CTGTACGTCTGTGAGTCGTGTGACGTGGCGTTCAACGCTGATGTGAACGGGGCGGAGAACATCCGTCTGGACATCAACGAAAGTAACTCCGAGTCTGCAC
CCAGTTTGGGTGGGGATAGGAGTACCGGCTGGTTGGCACAGCCAGGAGTCTACCTTCATGACCTCTCCCGAGGATTCCAACCTCGGACAGAGGTGGTAGA
CTCTAAACCATAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA
TGAGCAACAATCCACCGGTTACACCACGGCTGGATATTCCACGCTGACCACAATCTTTACATTTCAATAGAGTATAAGTACTTATAGAGACGTTCCACAA
TGCTGGACATTCACCGAACACACAAAGCGAAAATCTGCAACCATTCACAGGTCGCAGACTCGCTTGACCGGCACGGGTGGAGTGCCAGCAAGCTCTGGAA
CGTCGCCAACTACCACTCCCGAGACGTCTGGGAGGAAACGGGCGAGATTCCTGACCACGAGGAGCTGAAAGACGAGTTGAAGACCCATCCAAAGTACAAG
GGACTCCATTCGCAGTCCAGTCAGCGGGTTCTGGAGGAACTCGCTGAAGCCTTCAACTCGTGGTACTCTAGTGACGATGACAGGGACAATCCGCCCGGCT
ACCGCAAAGAAAACTACTATGACGACCAGGGCCGCCGCGTCCACGAAGAACATCCGCGCTCCACCGTGACGTGGAAGCAAAACGGCATCAAACACGACAC
CAAGAACAACCGCGTCAGGCTCTCCAAGGGCGCGAATCACAAAGAACACCCGAAAGCGTGGGAATACATCCTTGTCGAATACGAGACACGCCCCGGTGTC
ACGATCGAAAACCTACAACAAGTCAGGGCCGTCTACGACAGTGCAACGGAACGCTGGGAGCTGCACCTCGTCTGCAAAGACGAAATCGAGACTCCCGACG
CTCCCGGCACTGAGACAGCGGGTATCGACCTCGGCATCAGCAACTTTGCCGCCGTCGCCTACAGCACCGAAGACGCCGATCTCTACCCCGGCAACCGCTT
GAAACAGGACGGCTACTACTTCCCGAAGGAAATCGCCAACTGCGGCAATTCTGGTGGCGACGAAGCCACGCGACTCCACCACAAGTGGTCGGAGCGCCGG
ACTCACTTCTTCCACTCCGTAGCGAAGCACATCGTCGAACGGTGTGTCGAGAAAGGAGTTGGCCGCATCAACGTCGGGGACTTGGAAGGAGTCCGTGAAG
ACGAAGATGGTGAGTCGAAAAACTGGGGTCGGCACGGTAACCTTGACCTGCACGGATGGGCGTTCGATCGCTTCAGCTTGATTCTCGAATACAAGGCGAA
GGTTGAGGGAATCGAAGTCGTAGAGGTTTCAGAACGTGACACGAGCAAGACGTGTTGTGTCTGCGGGAGAGAAGACGATAGTCAGCGTGTTGAACGTGGC
CTGTACGTCTGTGAGTCGTGTGACGTGGCGTTCAACGCTGATGTGAACGGGGCGGAGAACATCCGTCTGGACATCAACGAAAGTAACTCCGAGTCTGCAC
CCAGTTTGGGTGGGGATAGGAGTACCGGCTGGTTGGCACAGCCAGGAGTCTACCTTCATGACCTCTCCCGAGGATTCCAACCTCGGACAGAGGTGGTAGA
CTCTAAACCATAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGCGTTCACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1314 bp | 437 aa | 200 | 1513 | + | No |
AG : TnpB
ORF sequence :
MLDIHRTHKAKICNHSQVADSLDRHGWSASKLWNVANYHSRDVWEETGEIPDHEELKDELKTHPKYKGLHSQSSQRVLEELAEAFNSWYSSDDDRDNPPG
YRKENYYDDQGRRVHEEHPRSTVTWKQNGIKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTIENLQQVRAVYDSATERWELHLVCKDEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCGNSGGDEATRLHHKWSERRTHFFHSVAKHIVERCVEKGVGRINVGDLEGVRE
DEDGESKNWGRHGNLDLHGWAFDRFSLILEYKAKVEGIEVVEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDVAFNADVNGAENIRLDINESNSESA
PSLGGDRSTGWLAQPGVYLHDLSRGFQPRTEVVDSKP
YRKENYYDDQGRRVHEEHPRSTVTWKQNGIKHDTKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTIENLQQVRAVYDSATERWELHLVCKDEIETPD
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCGNSGGDEATRLHHKWSERRTHFFHSVAKHIVERCVEKGVGRINVGDLEGVRE
DEDGESKNWGRHGNLDLHGWAFDRFSLILEYKAKVEGIEVVEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDVAFNADVNGAENIRLDINESNSESA
PSLGGDRSTGWLAQPGVYLHDLSRGFQPRTEVVDSKP
Blast result :
Comments
ISNma19 is 93% (TnpB) aa similar to ISNpe20.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165