ISNma18
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001932 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 |
DNA section
IS Length : 1531 bp
Ends
Left end : ACAAAACAGAGGAGAATACCTGGCCCTTTAGGGTCAGGATGAATCCGACAACCCCTCCACAGCCCACCGCCGATGGCAGGGCCGGATATTCCACCGCCCT II struct. : Yes
Right end : CTCACCGAGAGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGTGTTCACGCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCCGGCGTCAG | TTAT | TCTGGGAGTATC | tcaa |
DNA sequence
ACAAAACAGAGGAGAATACCTGGCCCTTTAGGGTCAGGATGAATCCGACAACCCCTCCACAGCCCACCGCCGATGGCAGGGCCGGATATTCCACCGCCCT
TAAACCAAATAGTTATAAGACAAGCGAATATAAGTGATTATACAGACGTTCAGAATGCTGGAGGTCCACCGCACCCATCGAGCGAAAATAGGCAACCACT
CACAGGTGGCAGAGTCGCTTGACTGGCATGGGTGGTCTGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGAGACGTCTGGGAGGAAACAGGCGA
GATCCCCAACCACGAGGAGTTGAAAGACGAGTTGAAGACCCATCCAAAGTACAAGGGGCTGCATAGTCAGTCCAGTCAGCGGATTCTGGAGGAACTCGCT
GAAGCCTTCAACTCGTGGTACTCTAGTGACGATGGCAGGGACAATCCGCCCGGCTACCGCAAGAAAAACTACTACGATGACGAAGGCCGCCGTGTCCACG
AAGAACACCCACGTTCGACGGTGACGTGGAAGCAAAACGGCATCAAACACGACTCGAAAAACAACCGGGTCCGGCTCTCGAAGGGCGCGAATCACAAGGA
ACACCCGAAAGCATGGGAGTACATCCTTGTCGAATACGAAACTCGCCCCGGCGTCACCGTTGAGAACCTACAACAGGTTCGTGCTGTCTACGATAACGCG
AAGGATCAGTGGGAGCTGCATCTCGTCTGCAAAGACGAGATCGAGACTCCTGGCGCTCCCGGCACCGAAACGGCGGGCATCGATCTCGGCATCAGCAACT
TCGCGGCGGTCGCGTACAGCACCGAAGACGCCGACCTCTATCCCGGCAACCGCCTGAAACAAGACGGGTACTACTTCCCGAAAGAAATTGCCAACTGCGA
CAATTCTGGTGGCGACGAAGCCACGCGGCTTCATCACAAGTGGTCGGAGCGCCGCACTCACTTCTTTCACAGTCTCGCCAAACACATCGTCCAGCGGTGT
GTCGAGAAAGATGTTGGCCGCATCAACGTCGGGGACTTGGAGGGGGTCCGTGAAGACAACGATGGTGAGTCGAAAAACTGGGGCAAGCACGGCAACCTCG
ACTTACACGGATGGGCGTTCGACCGCTTCAGCAACATCCTCACGTACAAGGCGAAAGTCGAGGGAATCGAGGTCGTGGACGTGTCCGAACGCGACACGAG
CAAGACGTGTTGTGTCTGCGGTAGAGAAGATGATAGTCAGCGTGTTGAACGCGGCCTGTACGTATGCGAGAAGTGTGATGCAGCGTTCAACGCTGATGTG
AACGGGGCGGAGAACATCCGTCTCGACCTGAACCAAAGTAACTCCGAGTCTTCGGCCAGTTTGGGCGAGGATAGGAGTACCGGCTGGTTGGCACAGCCTG
GAGTCTACCTTCATGACTTGTCTCACGGATTCTCACCGAGAGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGAT
TCCTCCGTGTTCACGCGGAGGAGGATGTCAA
TAAACCAAATAGTTATAAGACAAGCGAATATAAGTGATTATACAGACGTTCAGAATGCTGGAGGTCCACCGCACCCATCGAGCGAAAATAGGCAACCACT
CACAGGTGGCAGAGTCGCTTGACTGGCATGGGTGGTCTGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGAGACGTCTGGGAGGAAACAGGCGA
GATCCCCAACCACGAGGAGTTGAAAGACGAGTTGAAGACCCATCCAAAGTACAAGGGGCTGCATAGTCAGTCCAGTCAGCGGATTCTGGAGGAACTCGCT
GAAGCCTTCAACTCGTGGTACTCTAGTGACGATGGCAGGGACAATCCGCCCGGCTACCGCAAGAAAAACTACTACGATGACGAAGGCCGCCGTGTCCACG
AAGAACACCCACGTTCGACGGTGACGTGGAAGCAAAACGGCATCAAACACGACTCGAAAAACAACCGGGTCCGGCTCTCGAAGGGCGCGAATCACAAGGA
ACACCCGAAAGCATGGGAGTACATCCTTGTCGAATACGAAACTCGCCCCGGCGTCACCGTTGAGAACCTACAACAGGTTCGTGCTGTCTACGATAACGCG
AAGGATCAGTGGGAGCTGCATCTCGTCTGCAAAGACGAGATCGAGACTCCTGGCGCTCCCGGCACCGAAACGGCGGGCATCGATCTCGGCATCAGCAACT
TCGCGGCGGTCGCGTACAGCACCGAAGACGCCGACCTCTATCCCGGCAACCGCCTGAAACAAGACGGGTACTACTTCCCGAAAGAAATTGCCAACTGCGA
CAATTCTGGTGGCGACGAAGCCACGCGGCTTCATCACAAGTGGTCGGAGCGCCGCACTCACTTCTTTCACAGTCTCGCCAAACACATCGTCCAGCGGTGT
GTCGAGAAAGATGTTGGCCGCATCAACGTCGGGGACTTGGAGGGGGTCCGTGAAGACAACGATGGTGAGTCGAAAAACTGGGGCAAGCACGGCAACCTCG
ACTTACACGGATGGGCGTTCGACCGCTTCAGCAACATCCTCACGTACAAGGCGAAAGTCGAGGGAATCGAGGTCGTGGACGTGTCCGAACGCGACACGAG
CAAGACGTGTTGTGTCTGCGGTAGAGAAGATGATAGTCAGCGTGTTGAACGCGGCCTGTACGTATGCGAGAAGTGTGATGCAGCGTTCAACGCTGATGTG
AACGGGGCGGAGAACATCCGTCTCGACCTGAACCAAAGTAACTCCGAGTCTTCGGCCAGTTTGGGCGAGGATAGGAGTACCGGCTGGTTGGCACAGCCTG
GAGTCTACCTTCATGACTTGTCTCACGGATTCTCACCGAGAGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGAT
TCCTCCGTGTTCACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1314 bp | 437 aa | 155 | 1468 | + | No |
AG : TnpB
ORF sequence :
MLEVHRTHRAKIGNHSQVAESLDWHGWSASKLWNVANYHSRDVWEETGEIPNHEELKDELKTHPKYKGLHSQSSQRILEELAEAFNSWYSSDDGRDNPPG
YRKKNYYDDEGRRVHEEHPRSTVTWKQNGIKHDSKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTVENLQQVRAVYDNAKDQWELHLVCKDEIETPG
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCDNSGGDEATRLHHKWSERRTHFFHSLAKHIVQRCVEKDVGRINVGDLEGVRE
DNDGESKNWGKHGNLDLHGWAFDRFSNILTYKAKVEGIEVVDVSERDTSKTCCVCGREDDSQRVERGLYVCEKCDAAFNADVNGAENIRLDLNQSNSESS
ASLGEDRSTGWLAQPGVYLHDLSHGFSPREQVVDCKP
YRKKNYYDDEGRRVHEEHPRSTVTWKQNGIKHDSKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTVENLQQVRAVYDNAKDQWELHLVCKDEIETPG
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCDNSGGDEATRLHHKWSERRTHFFHSLAKHIVQRCVEKDVGRINVGDLEGVRE
DNDGESKNWGKHGNLDLHGWAFDRFSNILTYKAKVEGIEVVDVSERDTSKTCCVCGREDDSQRVERGLYVCEKCDAAFNADVNGAENIRLDLNQSNSESS
ASLGEDRSTGWLAQPGVYLHDLSHGFSPREQVVDCKP
Blast result :
Comments
ISNma18 is 93% (TnpB) aa similar to ISNpe20.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165