ISNma18

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099
DNA section
IS Length : 1531 bp

Ends


Left end : ACAAAACAGAGGAGAATACCTGGCCCTTTAGGGTCAGGATGAATCCGACAACCCCTCCACAGCCCACCGCCGATGGCAGGGCCGGATATTCCACCGCCCT II struct. : Yes
Right end : CTCACCGAGAGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCTCCGTGTTCACGCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCCGGCGTCAGTTATTCTGGGAGTATCtcaa

DNA sequence

ACAAAACAGAGGAGAATACCTGGCCCTTTAGGGTCAGGATGAATCCGACAACCCCTCCACAGCCCACCGCCGATGGCAGGGCCGGATATTCCACCGCCCT
TAAACCAAATAGTTATAAGACAAGCGAATATAAGTGATTATACAGACGTTCAGAATGCTGGAGGTCCACCGCACCCATCGAGCGAAAATAGGCAACCACT
CACAGGTGGCAGAGTCGCTTGACTGGCATGGGTGGTCTGCCAGCAAACTCTGGAACGTCGCCAACTACCACTCCCGAGACGTCTGGGAGGAAACAGGCGA
GATCCCCAACCACGAGGAGTTGAAAGACGAGTTGAAGACCCATCCAAAGTACAAGGGGCTGCATAGTCAGTCCAGTCAGCGGATTCTGGAGGAACTCGCT
GAAGCCTTCAACTCGTGGTACTCTAGTGACGATGGCAGGGACAATCCGCCCGGCTACCGCAAGAAAAACTACTACGATGACGAAGGCCGCCGTGTCCACG
AAGAACACCCACGTTCGACGGTGACGTGGAAGCAAAACGGCATCAAACACGACTCGAAAAACAACCGGGTCCGGCTCTCGAAGGGCGCGAATCACAAGGA
ACACCCGAAAGCATGGGAGTACATCCTTGTCGAATACGAAACTCGCCCCGGCGTCACCGTTGAGAACCTACAACAGGTTCGTGCTGTCTACGATAACGCG
AAGGATCAGTGGGAGCTGCATCTCGTCTGCAAAGACGAGATCGAGACTCCTGGCGCTCCCGGCACCGAAACGGCGGGCATCGATCTCGGCATCAGCAACT
TCGCGGCGGTCGCGTACAGCACCGAAGACGCCGACCTCTATCCCGGCAACCGCCTGAAACAAGACGGGTACTACTTCCCGAAAGAAATTGCCAACTGCGA
CAATTCTGGTGGCGACGAAGCCACGCGGCTTCATCACAAGTGGTCGGAGCGCCGCACTCACTTCTTTCACAGTCTCGCCAAACACATCGTCCAGCGGTGT
GTCGAGAAAGATGTTGGCCGCATCAACGTCGGGGACTTGGAGGGGGTCCGTGAAGACAACGATGGTGAGTCGAAAAACTGGGGCAAGCACGGCAACCTCG
ACTTACACGGATGGGCGTTCGACCGCTTCAGCAACATCCTCACGTACAAGGCGAAAGTCGAGGGAATCGAGGTCGTGGACGTGTCCGAACGCGACACGAG
CAAGACGTGTTGTGTCTGCGGTAGAGAAGATGATAGTCAGCGTGTTGAACGCGGCCTGTACGTATGCGAGAAGTGTGATGCAGCGTTCAACGCTGATGTG
AACGGGGCGGAGAACATCCGTCTCGACCTGAACCAAAGTAACTCCGAGTCTTCGGCCAGTTTGGGCGAGGATAGGAGTACCGGCTGGTTGGCACAGCCTG
GAGTCTACCTTCATGACTTGTCTCACGGATTCTCACCGAGAGAACAAGTGGTAGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGAT
TCCTCCGTGTTCACGCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1314 bp437 aa1551468+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEVHRTHRAKIGNHSQVAESLDWHGWSASKLWNVANYHSRDVWEETGEIPNHEELKDELKTHPKYKGLHSQSSQRILEELAEAFNSWYSSDDGRDNPPG
YRKKNYYDDEGRRVHEEHPRSTVTWKQNGIKHDSKNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTVENLQQVRAVYDNAKDQWELHLVCKDEIETPG
APGTETAGIDLGISNFAAVAYSTEDADLYPGNRLKQDGYYFPKEIANCDNSGGDEATRLHHKWSERRTHFFHSLAKHIVQRCVEKDVGRINVGDLEGVRE
DNDGESKNWGKHGNLDLHGWAFDRFSNILTYKAKVEGIEVVDVSERDTSKTCCVCGREDDSQRVERGLYVCEKCDAAFNADVNGAENIRLDLNQSNSESS
ASLGEDRSTGWLAQPGVYLHDLSHGFSPREQVVDCKP

 

Blast result :
Comments
ISNma18 is 93% (TnpB) aa similar to ISNpe20.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165