ISNma13
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001933 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 pNMAG01 |
DNA section
IS Length : 1475 bp
Ends
Left end : TAAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAATAAGTGTCAAATTATACCAGAATACAGT II struct. : Yes
Right end : GCAACCAGAGATGGAAGCGCGAGAGGAATTAAAGACCGTTGCATCAGCAGTGCAGGACTAAACACGGATGCCCCGCGCCACCGTGCGCGGGGTACTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CATCCCACGGTG | TCTA | TCCAGTAGTGCA | tcac |
DNA sequence
TAAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAATAAGTGTCAAATTATACCAGAATACAGT
GCAGTCGTCCAAACTCACCCAAACCTTATCGTTCGGACTAGACATCCATACGGGGAGTGGGGACGACCTGCAAACCGGCTGTATTGAGGCCCGCCGCATC
CGCAACGAAGCCAATCGACTCGACCGAGCTGGTTGGGATTGGGACGAGATCAAATCAACTGTTGTCGCCAACGCTGATCACGTCAACAACACCACCCAAC
TCATCGTTGACAAGGCACTCGGTGAAATCAAAACCTATCACGACAACAAAGATGACGGGTGGGGTCGACCTTACCCATACATCGACGAGTCGTACCCGAT
GGTGATGAACCACAGCGAAGGCTATCGCCTGTTCCCCGAAGACGACGGGACGGTTCGGTTCCGTATCACCGCCACAAGAGGCACGCACGTCAAAGGTGAA
CTTCGTGGCAACCCCGACCACTTCGACAGACTCCAAATCGCATTCAACGACGAAGAGTGGCGGGTTGGAACCGCTGAAGTCGTTCACAAACACGGTGAGT
GGCGACTCCACGTAACAGTCACCCACGAGACTCATCGCGTCGCCAGCAAGAACGACGCGGACACAATTGTTGGTGTGGATGTGAACGAGGACTGTATTGC
CCTTGCTGCAATGAGTCGGAACGGTGGGGTGAAACAGTCGGTTGTGTTTGAGTATCCGTCGGTGAAAGAACAGCGACACGAGTTTTTCACCAAGCGCAAG
CGGATGCAGAAAGCCAACCAGACCGCGTTTGCATCCTCCGTGCAGACGGAGGAACGAGACTACGTTCACGATTGCCTGCACAAAGTATCGCGGCAAGTAG
TTGACTGGGTCTCGCAATTCGAGGACCCGGTAATCGTCTTTGAAGACCTCAAAGACATGCGAGACTCCATCGATTATGGAACGCGAATGAATCGACGGCT
GCACTCACTCCCGTTTGCTGCACTCCAAAACATGGTGTCGTACAAGGCTGCGTGGGAAGGGATTCCCAGCGATGTGGTTGACCCGGAGTACACGAGCCAG
CGATGTCCGAGAACAGAGTGCCAGCACACAGAACGAGCGAACCGCCACAAGAAGCGGTTCAAGTGCAAACGGTGTGAGTTCCAAGACCATGCGGATAGGA
AAGCGGCGGTATGCGTTGTGCAGGAATGGTTTGACGAGCAGTCTGGAAATGTGCCGTCTCTCGAAACCCTTCCACGCGTGTGGACGGTGAGACGGGCGGC
ATCGGGGGCTGGTGGAGGCCCCGGCTCTCACGGAGCAATTTTCGCTTCGGGTGTTCACCAACACGGAACGTCGGCGCAACCAGAGATGGAAGCGCGAGAG
GAATTAAAGACCGTTGCATCAGCAGTGCAGGACTAAACACGGATGCCCCGCGCCACCGTGCGCGGGGTACTTCAC
GCAGTCGTCCAAACTCACCCAAACCTTATCGTTCGGACTAGACATCCATACGGGGAGTGGGGACGACCTGCAAACCGGCTGTATTGAGGCCCGCCGCATC
CGCAACGAAGCCAATCGACTCGACCGAGCTGGTTGGGATTGGGACGAGATCAAATCAACTGTTGTCGCCAACGCTGATCACGTCAACAACACCACCCAAC
TCATCGTTGACAAGGCACTCGGTGAAATCAAAACCTATCACGACAACAAAGATGACGGGTGGGGTCGACCTTACCCATACATCGACGAGTCGTACCCGAT
GGTGATGAACCACAGCGAAGGCTATCGCCTGTTCCCCGAAGACGACGGGACGGTTCGGTTCCGTATCACCGCCACAAGAGGCACGCACGTCAAAGGTGAA
CTTCGTGGCAACCCCGACCACTTCGACAGACTCCAAATCGCATTCAACGACGAAGAGTGGCGGGTTGGAACCGCTGAAGTCGTTCACAAACACGGTGAGT
GGCGACTCCACGTAACAGTCACCCACGAGACTCATCGCGTCGCCAGCAAGAACGACGCGGACACAATTGTTGGTGTGGATGTGAACGAGGACTGTATTGC
CCTTGCTGCAATGAGTCGGAACGGTGGGGTGAAACAGTCGGTTGTGTTTGAGTATCCGTCGGTGAAAGAACAGCGACACGAGTTTTTCACCAAGCGCAAG
CGGATGCAGAAAGCCAACCAGACCGCGTTTGCATCCTCCGTGCAGACGGAGGAACGAGACTACGTTCACGATTGCCTGCACAAAGTATCGCGGCAAGTAG
TTGACTGGGTCTCGCAATTCGAGGACCCGGTAATCGTCTTTGAAGACCTCAAAGACATGCGAGACTCCATCGATTATGGAACGCGAATGAATCGACGGCT
GCACTCACTCCCGTTTGCTGCACTCCAAAACATGGTGTCGTACAAGGCTGCGTGGGAAGGGATTCCCAGCGATGTGGTTGACCCGGAGTACACGAGCCAG
CGATGTCCGAGAACAGAGTGCCAGCACACAGAACGAGCGAACCGCCACAAGAAGCGGTTCAAGTGCAAACGGTGTGAGTTCCAAGACCATGCGGATAGGA
AAGCGGCGGTATGCGTTGTGCAGGAATGGTTTGACGAGCAGTCTGGAAATGTGCCGTCTCTCGAAACCCTTCCACGCGTGTGGACGGTGAGACGGGCGGC
ATCGGGGGCTGGTGGAGGCCCCGGCTCTCACGGAGCAATTTTCGCTTCGGGTGTTCACCAACACGGAACGTCGGCGCAACCAGAGATGGAAGCGCGAGAG
GAATTAAAGACCGTTGCATCAGCAGTGCAGGACTAAACACGGATGCCCCGCGCCACCGTGCGCGGGGTACTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 99 | 1436 | + | No |
AG : TnpB
ORF sequence :
MQSSKLTQTLSFGLDIHTGSGDDLQTGCIEARRIRNEANRLDRAGWDWDEIKSTVVANADHVNNTTQLIVDKALGEIKTYHDNKDDGWGRPYPYIDESYP
MVMNHSEGYRLFPEDDGTVRFRITATRGTHVKGELRGNPDHFDRLQIAFNDEEWRVGTAEVVHKHGEWRLHVTVTHETHRVASKNDADTIVGVDVNEDCI
ALAAMSRNGGVKQSVVFEYPSVKEQRHEFFTKRKRMQKANQTAFASSVQTEERDYVHDCLHKVSRQVVDWVSQFEDPVIVFEDLKDMRDSIDYGTRMNRR
LHSLPFAALQNMVSYKAAWEGIPSDVVDPEYTSQRCPRTECQHTERANRHKKRFKCKRCEFQDHADRKAAVCVVQEWFDEQSGNVPSLETLPRVWTVRRA
ASGAGGGPGSHGAIFASGVHQHGTSAQPEMEAREELKTVASAVQD
MVMNHSEGYRLFPEDDGTVRFRITATRGTHVKGELRGNPDHFDRLQIAFNDEEWRVGTAEVVHKHGEWRLHVTVTHETHRVASKNDADTIVGVDVNEDCI
ALAAMSRNGGVKQSVVFEYPSVKEQRHEFFTKRKRMQKANQTAFASSVQTEERDYVHDCLHKVSRQVVDWVSQFEDPVIVFEDLKDMRDSIDYGTRMNRR
LHSLPFAALQNMVSYKAAWEGIPSDVVDPEYTSQRCPRTECQHTERANRHKKRFKCKRCEFQDHADRKAAVCVVQEWFDEQSGNVPSLETLPRVWTVRRA
ASGAGGGPGSHGAIFASGVHQHGTSAQPEMEAREELKTVASAVQD
Blast result :
Comments
ISNma13 is 71% (TnpB) aa similar to ISNph7.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165