ISNma13

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001933 ND Natrialba magadii
Natrialba magadii ATCC 43099 pNMAG01
DNA section
IS Length : 1475 bp

Ends


Left end : TAAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAATAAGTGTCAAATTATACCAGAATACAGT II struct. : Yes
Right end : GCAACCAGAGATGGAAGCGCGAGAGGAATTAAAGACCGTTGCATCAGCAGTGCAGGACTAAACACGGATGCCCCGCGCCACCGTGCGCGGGGTACTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CATCCCACGGTGTCTATCCAGTAGTGCAtcac

DNA sequence

TAAAGAATAGCAGCGCGAGTACCACGGGCCACCGTGCCCGTGGGTGAAGCGCGTCACAACACGAACTTTTAATAAGTGTCAAATTATACCAGAATACAGT
GCAGTCGTCCAAACTCACCCAAACCTTATCGTTCGGACTAGACATCCATACGGGGAGTGGGGACGACCTGCAAACCGGCTGTATTGAGGCCCGCCGCATC
CGCAACGAAGCCAATCGACTCGACCGAGCTGGTTGGGATTGGGACGAGATCAAATCAACTGTTGTCGCCAACGCTGATCACGTCAACAACACCACCCAAC
TCATCGTTGACAAGGCACTCGGTGAAATCAAAACCTATCACGACAACAAAGATGACGGGTGGGGTCGACCTTACCCATACATCGACGAGTCGTACCCGAT
GGTGATGAACCACAGCGAAGGCTATCGCCTGTTCCCCGAAGACGACGGGACGGTTCGGTTCCGTATCACCGCCACAAGAGGCACGCACGTCAAAGGTGAA
CTTCGTGGCAACCCCGACCACTTCGACAGACTCCAAATCGCATTCAACGACGAAGAGTGGCGGGTTGGAACCGCTGAAGTCGTTCACAAACACGGTGAGT
GGCGACTCCACGTAACAGTCACCCACGAGACTCATCGCGTCGCCAGCAAGAACGACGCGGACACAATTGTTGGTGTGGATGTGAACGAGGACTGTATTGC
CCTTGCTGCAATGAGTCGGAACGGTGGGGTGAAACAGTCGGTTGTGTTTGAGTATCCGTCGGTGAAAGAACAGCGACACGAGTTTTTCACCAAGCGCAAG
CGGATGCAGAAAGCCAACCAGACCGCGTTTGCATCCTCCGTGCAGACGGAGGAACGAGACTACGTTCACGATTGCCTGCACAAAGTATCGCGGCAAGTAG
TTGACTGGGTCTCGCAATTCGAGGACCCGGTAATCGTCTTTGAAGACCTCAAAGACATGCGAGACTCCATCGATTATGGAACGCGAATGAATCGACGGCT
GCACTCACTCCCGTTTGCTGCACTCCAAAACATGGTGTCGTACAAGGCTGCGTGGGAAGGGATTCCCAGCGATGTGGTTGACCCGGAGTACACGAGCCAG
CGATGTCCGAGAACAGAGTGCCAGCACACAGAACGAGCGAACCGCCACAAGAAGCGGTTCAAGTGCAAACGGTGTGAGTTCCAAGACCATGCGGATAGGA
AAGCGGCGGTATGCGTTGTGCAGGAATGGTTTGACGAGCAGTCTGGAAATGTGCCGTCTCTCGAAACCCTTCCACGCGTGTGGACGGTGAGACGGGCGGC
ATCGGGGGCTGGTGGAGGCCCCGGCTCTCACGGAGCAATTTTCGCTTCGGGTGTTCACCAACACGGAACGTCGGCGCAACCAGAGATGGAAGCGCGAGAG
GAATTAAAGACCGTTGCATCAGCAGTGCAGGACTAAACACGGATGCCCCGCGCCACCGTGCGCGGGGTACTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa991436+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MQSSKLTQTLSFGLDIHTGSGDDLQTGCIEARRIRNEANRLDRAGWDWDEIKSTVVANADHVNNTTQLIVDKALGEIKTYHDNKDDGWGRPYPYIDESYP
MVMNHSEGYRLFPEDDGTVRFRITATRGTHVKGELRGNPDHFDRLQIAFNDEEWRVGTAEVVHKHGEWRLHVTVTHETHRVASKNDADTIVGVDVNEDCI
ALAAMSRNGGVKQSVVFEYPSVKEQRHEFFTKRKRMQKANQTAFASSVQTEERDYVHDCLHKVSRQVVDWVSQFEDPVIVFEDLKDMRDSIDYGTRMNRR
LHSLPFAALQNMVSYKAAWEGIPSDVVDPEYTSQRCPRTECQHTERANRHKKRFKCKRCEFQDHADRKAAVCVVQEWFDEQSGNVPSLETLPRVWTVRRA
ASGAGGGPGSHGAIFASGVHQHGTSAQPEMEAREELKTVASAVQD

 

Blast result :
Comments
ISNma13 is 71% (TnpB) aa similar to ISNph7.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165