ISNma12
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001934 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 pNMAG02 |
DNA section
IS Length : 1923 bp
Ends
Left end : ACATAGTTCGAGCGCATACCCGCGTCTTCAGGCGCGGGTCGAGCGGTAGGCATAGTTCGTCCGAACTACGTTGCTACGAACCGCTGGATTTCCCGCGTTT II struct. : No
Right end : GACGTGTGGACCGTATGCGTCTTGAAACCAACAGGCCACAACGCTGGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ATCTGATAACTG | TGAT | GAGAGCCGATCG |
DNA sequence
ACATAGTTCGAGCGCATACCCGCGTCTTCAGGCGCGGGTCGAGCGGTAGGCATAGTTCGTCCGAACTACGTTGCTACGAACCGCTGGATTTCCCGCGTTT
TCGGTAGTTTTAACAGTAGACTCGATCATAGTGTGTAGTACGGATGAAGACCAAACGGCACGCGACCTACAACCTTAACTATCACATAGTGTGGGTCCCG
AAGTGCCGAAACTCGGTGCTGGTTAACGAGGTCGCCAACCGTGTGCGTCGAATCCTCCACGAGATCGCCGACGAAAAAGGGTTGGAGATCATCGACCTTA
CCGTCCAATCCGACCACGTACACCTATTCGTCAGTAGCCCACCAAAGCACGCTCCCTCACTCCTCGCCAACTGGTTCAAAGGCATTAGTTCCCGGAAGTA
CAACCACCGCCACGCCGACCACGACGGCGAGAAAATCAAGTGGGCACGCGGCTACTATGCCGGAACAGCGGGACACGTCTCAAGCGAGACGGTGCAAGAC
TACATCCAGCGTCAACAGAACTCATGAGTTCTGTTTGGCACACGAGAAACGCGCCGCGTTTCTCGGGACGACACGAGGTGGGAGACACGTGACCGAACTC
ACTGAGACGCTGGAACTCAAACTTGTGGAGCTGAACGCCCACAAGCACCGCAAACTCTGTGAGACAAAACAGGCGTACCAAGACGCCCTCAAAGCCGCGT
TTAACGCGAATTGCACCACCCAGACCGAAGCGAACGATGTGGTGGTCAATTACGACCTGTCGGGATACGCGAAGAACGCCCTCAAGAAGTACGTCCCGCA
ACTCTGTGGGGACAGCTACAACGCTGACGAGCTTCACAACGATCACCCGGTTCGGTTCACCAACGAGGGGCCGAAGCTCGACCACCAGCCACAGAACGCC
CTCGAGTGGTACGTCAAAATCCCACACCACGAAGACTACCATCTCTGGATTCCAGTACAAATCAATCCAAACCAACGGGAGTGGCTCGAGGCGTTATACG
CAGACGACGCTGAAATGGGTGAATGCCGACTCATCGAACGGGACGGGACGTGGTACTTCCACGTCACCGCTACCCGCGACGTGGAGGAACAATCTCAGGC
GTCCGTCGACGAGCGGACGCCGATTGGTGTGGACATCGGAGAAGCGAGTCTCGTCACGGTGTGTCACCGCGACGAGAGCGGTTCTCCGGTTCGCCCCGAA
CTATGGGCCAACGACGGCAAAGCCGTCCGTCGGCTCCGCAAAACCTACTTCACCGCCAAGCGGCGGCTTCAAAAGCGCGGCAGTGAGCGAATCGCGGAGT
CCTACGGTGACACACTTTGGAGCCAGATCGACAATCTATTCCACCGTGTGACCCGCGAGGTCATCGAGTACGCTGAGTCTGTCGAGAATCCAGTATTGGT
ACTGGAAGACCTGACGTACATCCGCGAGAACATGGACTACGGCAAGTATATGAACCGGCGGTTGCACGGGTGGGGCTTTGCGAAGCTCCACGCACAAATC
CGGTACAAAGCCGCCGAGAAAGGGATTCCCGTCGAGACGGTGAATCCCCGGAACACATCAAAAGCGTGCCACGCCTGCGGTGAACATGGCTCCCGGCCGC
GACAGGCGACGTTCCGGTGTTCGAACGACGACTGTTGGCTCGGTGAGTACCAAGCTGACGTGAACGGGGCGATAAACATTGCAGATCGCTACCGTAGTGG
AGAGAGTCACCGCCGAAGTGACCGGGCTTCCCGGCAGAAGGCTGGTGACGATGACTCGGCTACGGATGGGGCCTCTTTGACCGGGCCACAAGACAGCCAC
GCCGATGCTGAAACCCAGCAGAAGACGTGTGGACCGTATGCGTCTTGAAACCAACAGGCCACAACGCTGGGCCTGAAATCCCATGGTGGGATTCCCGCGA
CTTTAGGCGCGGGAGGAGGTCAA
TCGGTAGTTTTAACAGTAGACTCGATCATAGTGTGTAGTACGGATGAAGACCAAACGGCACGCGACCTACAACCTTAACTATCACATAGTGTGGGTCCCG
AAGTGCCGAAACTCGGTGCTGGTTAACGAGGTCGCCAACCGTGTGCGTCGAATCCTCCACGAGATCGCCGACGAAAAAGGGTTGGAGATCATCGACCTTA
CCGTCCAATCCGACCACGTACACCTATTCGTCAGTAGCCCACCAAAGCACGCTCCCTCACTCCTCGCCAACTGGTTCAAAGGCATTAGTTCCCGGAAGTA
CAACCACCGCCACGCCGACCACGACGGCGAGAAAATCAAGTGGGCACGCGGCTACTATGCCGGAACAGCGGGACACGTCTCAAGCGAGACGGTGCAAGAC
TACATCCAGCGTCAACAGAACTCATGAGTTCTGTTTGGCACACGAGAAACGCGCCGCGTTTCTCGGGACGACACGAGGTGGGAGACACGTGACCGAACTC
ACTGAGACGCTGGAACTCAAACTTGTGGAGCTGAACGCCCACAAGCACCGCAAACTCTGTGAGACAAAACAGGCGTACCAAGACGCCCTCAAAGCCGCGT
TTAACGCGAATTGCACCACCCAGACCGAAGCGAACGATGTGGTGGTCAATTACGACCTGTCGGGATACGCGAAGAACGCCCTCAAGAAGTACGTCCCGCA
ACTCTGTGGGGACAGCTACAACGCTGACGAGCTTCACAACGATCACCCGGTTCGGTTCACCAACGAGGGGCCGAAGCTCGACCACCAGCCACAGAACGCC
CTCGAGTGGTACGTCAAAATCCCACACCACGAAGACTACCATCTCTGGATTCCAGTACAAATCAATCCAAACCAACGGGAGTGGCTCGAGGCGTTATACG
CAGACGACGCTGAAATGGGTGAATGCCGACTCATCGAACGGGACGGGACGTGGTACTTCCACGTCACCGCTACCCGCGACGTGGAGGAACAATCTCAGGC
GTCCGTCGACGAGCGGACGCCGATTGGTGTGGACATCGGAGAAGCGAGTCTCGTCACGGTGTGTCACCGCGACGAGAGCGGTTCTCCGGTTCGCCCCGAA
CTATGGGCCAACGACGGCAAAGCCGTCCGTCGGCTCCGCAAAACCTACTTCACCGCCAAGCGGCGGCTTCAAAAGCGCGGCAGTGAGCGAATCGCGGAGT
CCTACGGTGACACACTTTGGAGCCAGATCGACAATCTATTCCACCGTGTGACCCGCGAGGTCATCGAGTACGCTGAGTCTGTCGAGAATCCAGTATTGGT
ACTGGAAGACCTGACGTACATCCGCGAGAACATGGACTACGGCAAGTATATGAACCGGCGGTTGCACGGGTGGGGCTTTGCGAAGCTCCACGCACAAATC
CGGTACAAAGCCGCCGAGAAAGGGATTCCCGTCGAGACGGTGAATCCCCGGAACACATCAAAAGCGTGCCACGCCTGCGGTGAACATGGCTCCCGGCCGC
GACAGGCGACGTTCCGGTGTTCGAACGACGACTGTTGGCTCGGTGAGTACCAAGCTGACGTGAACGGGGCGATAAACATTGCAGATCGCTACCGTAGTGG
AGAGAGTCACCGCCGAAGTGACCGGGCTTCCCGGCAGAAGGCTGGTGACGATGACTCGGCTACGGATGGGGCCTCTTTGACCGGGCCACAAGACAGCCAC
GCCGATGCTGAAACCCAGCAGAAGACGTGTGGACCGTATGCGTCTTGAAACCAACAGGCCACAACGCTGGGCCTGAAATCCCATGGTGGGATTCCCGCGA
CTTTAGGCGCGGGAGGAGGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
384 bp | 127 aa | 144 | 527 | + | No |
Chemistry : Y1
ORF sequence :
MKTKRHATYNLNYHIVWVPKCRNSVLVNEVANRVRRILHEIADEKGLEIIDLTVQSDHVHLFVSSPPKHAPSLLANWFKGISSRKYNHRHADHDGEKIKW
ARGYYAGTAGHVSSETVQDYIQRQQNS
ARGYYAGTAGHVSSETVQDYIQRQQNS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 589 | 1848 | + | No |
AG : TnpB
ORF sequence :
MTELTETLELKLVELNAHKHRKLCETKQAYQDALKAAFNANCTTQTEANDVVVNYDLSGYAKNALKKYVPQLCGDSYNADELHNDHPVRFTNEGPKLDHQ
PQNALEWYVKIPHHEDYHLWIPVQINPNQREWLEALYADDAEMGECRLIERDGTWYFHVTATRDVEEQSQASVDERTPIGVDIGEASLVTVCHRDESGSP
VRPELWANDGKAVRRLRKTYFTAKRRLQKRGSERIAESYGDTLWSQIDNLFHRVTREVIEYAESVENPVLVLEDLTYIRENMDYGKYMNRRLHGWGFAKL
HAQIRYKAAEKGIPVETVNPRNTSKACHACGEHGSRPRQATFRCSNDDCWLGEYQADVNGAINIADRYRSGESHRRSDRASRQKAGDDDSATDGASLTGP
QDSHADAETQQKTCGPYAS
PQNALEWYVKIPHHEDYHLWIPVQINPNQREWLEALYADDAEMGECRLIERDGTWYFHVTATRDVEEQSQASVDERTPIGVDIGEASLVTVCHRDESGSP
VRPELWANDGKAVRRLRKTYFTAKRRLQKRGSERIAESYGDTLWSQIDNLFHRVTREVIEYAESVENPVLVLEDLTYIRENMDYGKYMNRRLHGWGFAKL
HAQIRYKAAEKGIPVETVNPRNTSKACHACGEHGSRPRQATFRCSNDDCWLGEYQADVNGAINIADRYRSGESHRRSDRASRQKAGDDDSATDGASLTGP
QDSHADAETQQKTCGPYAS
Blast result :
Comments
ISNma12 is 92% (TnpA) aa similar to ISNamo18 and 86% (TnpB) aa similar to ISNamo17.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165