ISHarch2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1604 bp
Ends
Left end : CGAGAAAGATCTGATTCGGCGTCTACTGTTTAGGGCGGGCGTGAATCCGACACCCTAATTCACAACCCACGTTCGATACTTACTCCGGGGTATCCTCTCT II struct. : Yes
Right end : CCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAAACGATACCCCCAGCGCGAGGAAACCCCGGCGTGAACACCGGGGAGGATGTCAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGAGCGGTTCA | CCTG | TTCCTGACGAGC | tcat |
DNA sequence
CGAGAAAGATCTGATTCGGCGTCTACTGTTTAGGGCGGGCGTGAATCCGACACCCTAATTCACAACCCACGTTCGATACTTACTCCGGGGTATCCTCTCT
GACTTTCTTCTCGCCTTCAAGGAGCAACCCCTTCCACGTCAATCCACGGTGCTTCTTCAGTTCCTTCAACCGCTCGTACTGTTCATCGTCATCGAACTCG
ATTCGAACTTCAACCATACAATAACACACAAACCACATCTTTATGTGTGCTCCGATATGACCAGTAGTTGATGAAGCGGACCAACACCTTCGACGTGATT
CCACAGTCCGACGAGGACGAGGAGTTACTCCGACGCCTGTTGGACGCTTCTGCCGCTCTCTGGAACGAAATCAACTACGAGCGCCGCGAACACTACGCCG
ACCCGGACAGAGACGTGTGGGAAATCAGCGAGCATCGCGGACGCTACGGCGGGACGCTCGGTGCTTCGACCGTTCAGCAAATCGAACGGAAGAACCGCGA
AGCGTGGAAGTCGTTCTTTGCGCTCCAAAAGAAGGGCGAAGCCAACGGCAAACCCGGATTCTGGGGCAACTCAGAGAACGGACGCGACCTCCGAACGTAC
ATCCGAAACACGTCGTACTCAGTCGAGTGGGGCGAATACTCCCGACTCGAAATCCTCGTCGGGCAAGACCTGAAAGACGAGTACGGGCTTGGACACCGCG
AACGCCTCCGACTCGAAGTTCGAGGCGACCCCAGCTGGACGGAGTACGAGAAGCAGGGTCGGTTGGAGTTGTTCTGGGACGAGAACGCACAGACATTCAG
GGCCTTTCAGCCAGTCACAATCGACACTTCTCGACTGGCACACCCACTGGCGGACGAAACCGCCGCACTGGATATTGGTGCGAACAACCTCGTCGCCTGT
ACAACCACAACTGGCACGCAACTGCTGTACGAGGGGCGCGACCTGTTCGAGCAGTTCCGCGAGACGACGCGAGAAATCGCTCGGCTACAGTCGAAACTCC
GCGAGGGACGGTACTCCTCGAATCGCATTCGACGGCTGTACGACCGACGAACAAAGCACCGCGACCACGCCCAAGACGCACTCGCACGCGACCTCATCGA
ACGCCTGTACGACGAGGGCGTTTCGACGGTGTACGTCGGAGCGTTGACGGGCATACTCGACATACACTGGTCGGTCGAAGCGAACGCGAAGACGCACAAC
TTCTGGGCGTTCCGGCAGTTCATCGACCGGCTCGCCTGTACCGCCGAGGAATACGGTATGGGGGTCGAAGTTCGGTCAGAAGCGTGGACTTCTCAAGAGT
GTCCTGAGTGTGGCGACCACGAGGAGACGATTCGCCACGAGGATACACTGACGTGTTCGTGCGGTTTCGAGGGCCACGCAGACCTCACAGCGTCGGAGAC
GTTCCTGAGACGGCAGACAGACGTATCAAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGACCACGACTGGTCGGGGAAACCACACCCTCATGAA
AGTCCCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAAACGATACCCCCAGCGCGAGGAAACCCCGGCGTGAACACCGGGGAGGATG
TCAT
GACTTTCTTCTCGCCTTCAAGGAGCAACCCCTTCCACGTCAATCCACGGTGCTTCTTCAGTTCCTTCAACCGCTCGTACTGTTCATCGTCATCGAACTCG
ATTCGAACTTCAACCATACAATAACACACAAACCACATCTTTATGTGTGCTCCGATATGACCAGTAGTTGATGAAGCGGACCAACACCTTCGACGTGATT
CCACAGTCCGACGAGGACGAGGAGTTACTCCGACGCCTGTTGGACGCTTCTGCCGCTCTCTGGAACGAAATCAACTACGAGCGCCGCGAACACTACGCCG
ACCCGGACAGAGACGTGTGGGAAATCAGCGAGCATCGCGGACGCTACGGCGGGACGCTCGGTGCTTCGACCGTTCAGCAAATCGAACGGAAGAACCGCGA
AGCGTGGAAGTCGTTCTTTGCGCTCCAAAAGAAGGGCGAAGCCAACGGCAAACCCGGATTCTGGGGCAACTCAGAGAACGGACGCGACCTCCGAACGTAC
ATCCGAAACACGTCGTACTCAGTCGAGTGGGGCGAATACTCCCGACTCGAAATCCTCGTCGGGCAAGACCTGAAAGACGAGTACGGGCTTGGACACCGCG
AACGCCTCCGACTCGAAGTTCGAGGCGACCCCAGCTGGACGGAGTACGAGAAGCAGGGTCGGTTGGAGTTGTTCTGGGACGAGAACGCACAGACATTCAG
GGCCTTTCAGCCAGTCACAATCGACACTTCTCGACTGGCACACCCACTGGCGGACGAAACCGCCGCACTGGATATTGGTGCGAACAACCTCGTCGCCTGT
ACAACCACAACTGGCACGCAACTGCTGTACGAGGGGCGCGACCTGTTCGAGCAGTTCCGCGAGACGACGCGAGAAATCGCTCGGCTACAGTCGAAACTCC
GCGAGGGACGGTACTCCTCGAATCGCATTCGACGGCTGTACGACCGACGAACAAAGCACCGCGACCACGCCCAAGACGCACTCGCACGCGACCTCATCGA
ACGCCTGTACGACGAGGGCGTTTCGACGGTGTACGTCGGAGCGTTGACGGGCATACTCGACATACACTGGTCGGTCGAAGCGAACGCGAAGACGCACAAC
TTCTGGGCGTTCCGGCAGTTCATCGACCGGCTCGCCTGTACCGCCGAGGAATACGGTATGGGGGTCGAAGTTCGGTCAGAAGCGTGGACTTCTCAAGAGT
GTCCTGAGTGTGGCGACCACGAGGAGACGATTCGCCACGAGGATACACTGACGTGTTCGTGCGGTTTCGAGGGCCACGCAGACCTCACAGCGTCGGAGAC
GTTCCTGAGACGGCAGACAGACGTATCAAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGACCACGACTGGTCGGGGAAACCACACCCTCATGAA
AGTCCCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAAACGATACCCCCAGCGCGAGGAAACCCCGGCGTGAACACCGGGGAGGATG
TCAT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
138 bp | 45 aa | 80 | 217 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MVEVRIEFDDDEQYERLKELKKHRGLTWKGLLLEGEKKVREDTPE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 271 | 1551 | + | No |
AG : TnpB
ORF sequence :
MKRTNTFDVIPQSDEDEELLRRLLDASAALWNEINYERREHYADPDRDVWEISEHRGRYGGTLGASTVQQIERKNREAWKSFFALQKKGEANGKPGFWGN
SENGRDLRTYIRNTSYSVEWGEYSRLEILVGQDLKDEYGLGHRERLRLEVRGDPSWTEYEKQGRLELFWDENAQTFRAFQPVTIDTSRLAHPLADETAAL
DIGANNLVACTTTTGTQLLYEGRDLFEQFRETTREIARLQSKLREGRYSSNRIRRLYDRRTKHRDHAQDALARDLIERLYDEGVSTVYVGALTGILDIHW
SVEANAKTHNFWAFRQFIDRLACTAEEYGMGVEVRSEAWTSQECPECGDHEETIRHEDTLTCSCGFEGHADLTASETFLRRQTDVSRPMARPVRFEWDDH
DWSGKPHPHESPKEVRTNPQVASVGR
SENGRDLRTYIRNTSYSVEWGEYSRLEILVGQDLKDEYGLGHRERLRLEVRGDPSWTEYEKQGRLELFWDENAQTFRAFQPVTIDTSRLAHPLADETAAL
DIGANNLVACTTTTGTQLLYEGRDLFEQFRETTREIARLQSKLREGRYSSNRIRRLYDRRTKHRDHAQDALARDLIERLYDEGVSTVYVGALTGILDIHW
SVEANAKTHNFWAFRQFIDRLACTAEEYGMGVEVRSEAWTSQECPECGDHEETIRHEDTLTCSCGFEGHADLTASETFLRRQTDVSRPMARPVRFEWDDH
DWSGKPHPHESPKEVRTNPQVASVGR
Blast result :
Comments
ISHarch2 is 84% (TnpB) aa similar to ISHhu1. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission GenBank.