ISHarch2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002988 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 1604 bp

Ends


Left end : CGAGAAAGATCTGATTCGGCGTCTACTGTTTAGGGCGGGCGTGAATCCGACACCCTAATTCACAACCCACGTTCGATACTTACTCCGGGGTATCCTCTCT II struct. : Yes
Right end : CCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAAACGATACCCCCAGCGCGAGGAAACCCCGGCGTGAACACCGGGGAGGATGTCAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGAGCGGTTCACCTGTTCCTGACGAGCtcat

DNA sequence

CGAGAAAGATCTGATTCGGCGTCTACTGTTTAGGGCGGGCGTGAATCCGACACCCTAATTCACAACCCACGTTCGATACTTACTCCGGGGTATCCTCTCT
GACTTTCTTCTCGCCTTCAAGGAGCAACCCCTTCCACGTCAATCCACGGTGCTTCTTCAGTTCCTTCAACCGCTCGTACTGTTCATCGTCATCGAACTCG
ATTCGAACTTCAACCATACAATAACACACAAACCACATCTTTATGTGTGCTCCGATATGACCAGTAGTTGATGAAGCGGACCAACACCTTCGACGTGATT
CCACAGTCCGACGAGGACGAGGAGTTACTCCGACGCCTGTTGGACGCTTCTGCCGCTCTCTGGAACGAAATCAACTACGAGCGCCGCGAACACTACGCCG
ACCCGGACAGAGACGTGTGGGAAATCAGCGAGCATCGCGGACGCTACGGCGGGACGCTCGGTGCTTCGACCGTTCAGCAAATCGAACGGAAGAACCGCGA
AGCGTGGAAGTCGTTCTTTGCGCTCCAAAAGAAGGGCGAAGCCAACGGCAAACCCGGATTCTGGGGCAACTCAGAGAACGGACGCGACCTCCGAACGTAC
ATCCGAAACACGTCGTACTCAGTCGAGTGGGGCGAATACTCCCGACTCGAAATCCTCGTCGGGCAAGACCTGAAAGACGAGTACGGGCTTGGACACCGCG
AACGCCTCCGACTCGAAGTTCGAGGCGACCCCAGCTGGACGGAGTACGAGAAGCAGGGTCGGTTGGAGTTGTTCTGGGACGAGAACGCACAGACATTCAG
GGCCTTTCAGCCAGTCACAATCGACACTTCTCGACTGGCACACCCACTGGCGGACGAAACCGCCGCACTGGATATTGGTGCGAACAACCTCGTCGCCTGT
ACAACCACAACTGGCACGCAACTGCTGTACGAGGGGCGCGACCTGTTCGAGCAGTTCCGCGAGACGACGCGAGAAATCGCTCGGCTACAGTCGAAACTCC
GCGAGGGACGGTACTCCTCGAATCGCATTCGACGGCTGTACGACCGACGAACAAAGCACCGCGACCACGCCCAAGACGCACTCGCACGCGACCTCATCGA
ACGCCTGTACGACGAGGGCGTTTCGACGGTGTACGTCGGAGCGTTGACGGGCATACTCGACATACACTGGTCGGTCGAAGCGAACGCGAAGACGCACAAC
TTCTGGGCGTTCCGGCAGTTCATCGACCGGCTCGCCTGTACCGCCGAGGAATACGGTATGGGGGTCGAAGTTCGGTCAGAAGCGTGGACTTCTCAAGAGT
GTCCTGAGTGTGGCGACCACGAGGAGACGATTCGCCACGAGGATACACTGACGTGTTCGTGCGGTTTCGAGGGCCACGCAGACCTCACAGCGTCGGAGAC
GTTCCTGAGACGGCAGACAGACGTATCAAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGACCACGACTGGTCGGGGAAACCACACCCTCATGAA
AGTCCCAAAGAAGTGCGCACGAACCCGCAAGTTGCCTCCGTGGGTCGGTAAACGATACCCCCAGCGCGAGGAAACCCCGGCGTGAACACCGGGGAGGATG
TCAT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
138 bp45 aa80217-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MVEVRIEFDDDEQYERLKELKKHRGLTWKGLLLEGEKKVREDTPE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1281 bp426 aa2711551+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRTNTFDVIPQSDEDEELLRRLLDASAALWNEINYERREHYADPDRDVWEISEHRGRYGGTLGASTVQQIERKNREAWKSFFALQKKGEANGKPGFWGN
SENGRDLRTYIRNTSYSVEWGEYSRLEILVGQDLKDEYGLGHRERLRLEVRGDPSWTEYEKQGRLELFWDENAQTFRAFQPVTIDTSRLAHPLADETAAL
DIGANNLVACTTTTGTQLLYEGRDLFEQFRETTREIARLQSKLREGRYSSNRIRRLYDRRTKHRDHAQDALARDLIERLYDEGVSTVYVGALTGILDIHW
SVEANAKTHNFWAFRQFIDRLACTAEEYGMGVEVRSEAWTSQECPECGDHEETIRHEDTLTCSCGFEGHADLTASETFLRRQTDVSRPMARPVRFEWDDH
DWSGKPHPHESPKEVRTNPQVASVGR

 

Blast result :
Comments
ISHarch2 is 84% (TnpB) aa similar to ISHhu1. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I.,
Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission GenBank.