ISHarch4

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002989 ND Halophilic archaeon
Halophilic archaeon DL31 plasmid phalar01
DNA section
IS Length : 743 bp

Ends


IR Length : 18

IRL : GGCACTGTCTAGTTAAGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCGAG
IRR : GGCACTGTCTAGTTAAGCACCTCTTCAGCTGGCGTTCGTCCATCGAGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
GTACATTTATAGATTTGGCAAGAGGTTG8

DNA sequence

GGCACTGTCTAGTTAAGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCGAGTGTCTTGCTTGATCCAGAACTGCTCACAGAGACGTTGAACACAGCAAATA
TTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTTAGGGCGTTCGCCGTCCGGCTCCACGCGACCGGCTGTTCGCTTCGAGAAACGAAAGAGATTCT
CCGATTATTCGGCGTAGAGCGCTCTCATCAAGCGATTTGTCAATGGGTTCATCGAGTCGCTGATAGCGTTGGCGACCCGCCGACGGCGCAGCCGTCAAGG
GTCGCGGTTGACGAGACCGCTATCAAAATCAACGGTGAGTGGTCTTGGCTGTACGCTGCAATAGACCTCGACACAAAATTGATTCTTGACGTGGAACTGT
TCGGCCGTCACGGCACTGATCCAGCGGCTGCATTTCTTCATGGACTCCGTGAGAAACACGATCTTTCCGACGCTGTGTTTCTCGTTGACCAATTCGGTTA
TCGGACTGCCCTCTCTCGCTTAGGACTCAATGGTCGGGTTGACTATACGGACCGAAACCTCATTGAGAAGTGGTTTCACACGCTCAAAATGCGCATTGAC
CGTTTCCACAACTCATGGGTCGGCAGTCGGGCAAGCGCACGCGAATGGCTTGAACAATTCATGCATTACTACAACCGCCAGAGACCGCATCAATCACTCG
ATGGACGAACGCCAGCTGAAGAGGTGCTTAACTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa55735+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLDPELLTETLNTANIECWERERTATPVRAFAVRLHATGCSLRETKEILRLFGVERSHQAICQWVHRVADSVGDPPTAQPSRVAVDETAIKINGEWSWLY
AAIDLDTKLILDVELFGRHGTDPAAAFLHGLREKHDLSDAVFLVDQFGYRTALSRLGLNGRVDYTDRNLIEKWFHTLKMRIDRFHNSWVGSRASAREWLE
QFMHYYNRQRPHQSLDGRTPAEEVLN

 

Blast result :
Comments
ISHarch4 is 90% aa similar to ISHli8.
IS_pep_1 is Halar_0123, encoded on plasmid phalar01.
References
1] Pfeiffer, F. (2015) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank