ISHarch4
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002989 | ND | Halophilic archaeon | Halophilic archaeon DL31 plasmid phalar01 |
DNA section
IS Length : 743 bp
Ends
IR Length : 18
IRL : GGCACTGTCTAGTTAAGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCGAG
IRR : GGCACTGTCTAGTTAAGCACCTCTTCAGCTGGCGTTCGTCCATCGAGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTACATTTAT | AGATTTGG | CAAGAGGTTG | 8 |
DNA sequence
GGCACTGTCTAGTTAAGCCAGTTTGAGAAGCGAGCAGTTCGTAGATCGAGTGTCTTGCTTGATCCAGAACTGCTCACAGAGACGTTGAACACAGCAAATA
TTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTTAGGGCGTTCGCCGTCCGGCTCCACGCGACCGGCTGTTCGCTTCGAGAAACGAAAGAGATTCT
CCGATTATTCGGCGTAGAGCGCTCTCATCAAGCGATTTGTCAATGGGTTCATCGAGTCGCTGATAGCGTTGGCGACCCGCCGACGGCGCAGCCGTCAAGG
GTCGCGGTTGACGAGACCGCTATCAAAATCAACGGTGAGTGGTCTTGGCTGTACGCTGCAATAGACCTCGACACAAAATTGATTCTTGACGTGGAACTGT
TCGGCCGTCACGGCACTGATCCAGCGGCTGCATTTCTTCATGGACTCCGTGAGAAACACGATCTTTCCGACGCTGTGTTTCTCGTTGACCAATTCGGTTA
TCGGACTGCCCTCTCTCGCTTAGGACTCAATGGTCGGGTTGACTATACGGACCGAAACCTCATTGAGAAGTGGTTTCACACGCTCAAAATGCGCATTGAC
CGTTTCCACAACTCATGGGTCGGCAGTCGGGCAAGCGCACGCGAATGGCTTGAACAATTCATGCATTACTACAACCGCCAGAGACCGCATCAATCACTCG
ATGGACGAACGCCAGCTGAAGAGGTGCTTAACTAGACAGTGCC
TTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTTAGGGCGTTCGCCGTCCGGCTCCACGCGACCGGCTGTTCGCTTCGAGAAACGAAAGAGATTCT
CCGATTATTCGGCGTAGAGCGCTCTCATCAAGCGATTTGTCAATGGGTTCATCGAGTCGCTGATAGCGTTGGCGACCCGCCGACGGCGCAGCCGTCAAGG
GTCGCGGTTGACGAGACCGCTATCAAAATCAACGGTGAGTGGTCTTGGCTGTACGCTGCAATAGACCTCGACACAAAATTGATTCTTGACGTGGAACTGT
TCGGCCGTCACGGCACTGATCCAGCGGCTGCATTTCTTCATGGACTCCGTGAGAAACACGATCTTTCCGACGCTGTGTTTCTCGTTGACCAATTCGGTTA
TCGGACTGCCCTCTCTCGCTTAGGACTCAATGGTCGGGTTGACTATACGGACCGAAACCTCATTGAGAAGTGGTTTCACACGCTCAAAATGCGCATTGAC
CGTTTCCACAACTCATGGGTCGGCAGTCGGGCAAGCGCACGCGAATGGCTTGAACAATTCATGCATTACTACAACCGCCAGAGACCGCATCAATCACTCG
ATGGACGAACGCCAGCTGAAGAGGTGCTTAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 55 | 735 | + | No |
Chemistry : DDE
ORF sequence :
MLDPELLTETLNTANIECWERERTATPVRAFAVRLHATGCSLRETKEILRLFGVERSHQAICQWVHRVADSVGDPPTAQPSRVAVDETAIKINGEWSWLY
AAIDLDTKLILDVELFGRHGTDPAAAFLHGLREKHDLSDAVFLVDQFGYRTALSRLGLNGRVDYTDRNLIEKWFHTLKMRIDRFHNSWVGSRASAREWLE
QFMHYYNRQRPHQSLDGRTPAEEVLN
AAIDLDTKLILDVELFGRHGTDPAAAFLHGLREKHDLSDAVFLVDQFGYRTALSRLGLNGRVDYTDRNLIEKWFHTLKMRIDRFHNSWVGSRASAREWLE
QFMHYYNRQRPHQSLDGRTPAEEVLN
Blast result :
Comments
ISHarch4 is 90% aa similar to ISHli8.
IS_pep_1 is Halar_0123, encoded on plasmid phalar01.
IS_pep_1 is Halar_0123, encoded on plasmid phalar01.
References
1] Pfeiffer, F. (2015) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank