ISMco3

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015416 ND Methanosaeta concilii
Methanosaeta concilii GP6
DNA section
IS Length : 1406 bp

Ends


IR Length : 16/17

IRL : CTGTACTTTCCAACTTTTTAATAGATTTATAATATTCTCCTGTTAACTCA
IRR : CTGTACTTTCCAAGTTTCTCCCTTGTTTATAATTTTTAATTTATCATATT

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTCTCTATTTCTTTTATAATTCCCA8

DNA sequence

CTGTACTTTCCAACTTTTTAATAGATTTATAATATTCTCCTGTTAACTCAAACCATAAATTTCCTATAGAAAATTAAAGCTTTTATACTTGGATCCGAAT
CCCTTCTTCGGGAGTAGAATGATCAAAATAGTAAAGGTACCGTTGCAATTGGAGCCGTTTTTAGATAAGTTTAGGGATCTCTTCACAAAACCGAGTTACA
GATCATTTCGAGATCTGTGTGGCGCGTTGAGCGTATGTGATAAATCCAAGACCGTTTCTAACCTTTGTGATACTATGGCAGATTGTAGCAAAGGGAAAAA
ATCACGTTCTTCATACAATTGGTTCTTTAGCGATGCGAATTGGGATGAAAATGAAGTTGCACAACGCAAGGTGGATCTTTTCATCGATAGTTTATGTTTG
AAAGAGAACGATAAACTATTATTAATAATTGATGATACATACAATGAGAAAGAAGGAAATCAAACAGATGGTGTGGGCAAATTTTACGATCATAGTAAAG
AAGCCTATATTTGGGGTAACAATTTCGTTACCTCTGTTGTCCAATCAAAAGGACTATTTATTCCACATAAAGCTAAGATGTATATTAAGAATGATGACGA
AAATGAGAATTTTAAAACAAAAATGGAGATTGCCTTTGAAGAGATCATCAAACCATTAGTTGTACCAAAAAGCATCGATCTTTATATCGTTTTCGATAGC
TGGTGGTTTTCTTCTGATCTATTTAGCAAGTGCCTTAAGCTAGGGCATAATATCGTATGCCAAATCAAGTCTGATAAGAAAGTCGGAATAAATAAGGATA
TGTATTTCCAAGTCAGAGATCTAGCGAATCAAATTGAAGATAAATTTTTTATTAAGACAACAGTTAGCGTTCGTGGAAAAAAGAAGACCTATTATGCATT
TGAAAAGAAGGTAATCATAGACAAGGTAGGCGAAGTTAAGCTTGTTATCTCCAAGAGAAAAAAAGATAGCACGACAAAATATATAATCAGCACTAATGGA
TCGCTTTCATTGAAAGAAATACTCTCAATTTACGAGGACAGATGGGATATAGAAACAGCTCATAGAGAGGCAAATCAAAAATTAGGATTTAAAGATTACC
AATTAAGAGATAAACACTCAATTGAAAGATTTATTCAAATGGTTTTTTCAGTATGGACTGCAATTCTCTTATGGGAAATAGATAATCCGCCACCTAAAGA
TGGCTCAAAATCAAGAACGATGGGCGACATGGTCGATAGAGTAAAAATGCAAGCTGTTGGAGAAACATTTGAATTTGTCATGACATATTTTAATTTGCCT
GTACCTGATGGAGGATTGCTTTATATACTCAAGAGCCTTGGAATGAAGATATGAATAATATGATAAATTAAAAATTATAAACAAGGGAGAAACTTGGAAA
GTACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa1191354+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKIVKVPLQLEPFLDKFRDLFTKPSYRSFRDLCGALSVCDKSKTVSNLCDTMADCSKGKKSRSSYNWFFSDANWDENEVAQRKVDLFIDSLCLKENDKL
LLIIDDTYNEKEGNQTDGVGKFYDHSKEAYIWGNNFVTSVVQSKGLFIPHKAKMYIKNDDENENFKTKMEIAFEEIIKPLVVPKSIDLYIVFDSWWFSSD
LFSKCLKLGHNIVCQIKSDKKVGINKDMYFQVRDLANQIEDKFFIKTTVSVRGKKKTYYAFEKKVIIDKVGEVKLVISKRKKDSTTKYIISTNGSLSLKE
ILSIYEDRWDIETAHREANQKLGFKDYQLRDKHSIERFIQMVFSVWTAILLWEIDNPPPKDGSKSRTMGDMVDRVKMQAVGETFEFVMTYFNLPVPDGGL
LYILKSLGMKI

 

Blast result :
Comments
ISMco3 is 48% aa similar to ISCth16.
References
1] ISfinder submission (2012)
2] Barber,R.D., Zhang,L., Harnack,M., Olson,M.V., Kaul,R., Ingram-Smith,C. and Smith,K.S. (2011) J. Bacteriol. 193 (14), 3668-3669.