ISHbo9

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001690 ND Halogeometricum borinquense
Halogeometricum borinquense DSM 11551
DNA section
IS Length : 1344 bp

Ends


Left end : AGAGGTACAAGGAGAATGCCCCGAGGCTTGACCTCGGGGTTGAATCCGACACTCCGTGAAACAAACCATTAAGTTAACACACTTCTAACCAGCAGACAGC II struct. : Yes
Right end : ACGCCCGTGGAGACTGCGCTCCCTACGGATACTCATTCGGTATCTGCAAAGCGCGTCGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACGAACGACGGCTTTACCGGTCTCGATACtcac
ACAAGTTGCAGTTTTACATCGTCCCGTCGtcac

DNA sequence

AGAGGTACAAGGAGAATGCCCCGAGGCTTGACCTCGGGGTTGAATCCGACACTCCGTGAAACAAACCATTAAGTTAACACACTTCTAACCAGCAGACAGC
GATGGAATACAGTCACCGCTACCACGCTTACCCGACACAAGCAGTAGCGGAGCGACTGGAATACCACATCGACGTTCATCGCCAAGCGTACAACTACACT
CGGTACGAATACGAGAACGTTGACGCCGACAACATCGGGTCAGCGTACAAACACCACTACCGACTCCCCGATTGGAAAGACGAGTTCTCTGTGTTCTCCG
ACGTGAACTCGAAGGCTCTGCAACGAACCGTCACACGGTTCTATCAGAATCTCTCGAACCTTTCCAAAAAGAAACAGAACGGAAACAAGGTTGGGAAGTT
GAAGTGGAAGTCTCCGACTGAGTACCAGAGCATGACGTATTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGCCGACACGCGACGTTAGAACTCTCC
AAAGTCGGAGATATTCGTATTCGCTACCACCGTGAAATCCATGACCAAGCAGAAATCAAGGAAGTCACCATCAAGAAGGAGACAACCGGAGAGTGGTTCG
TCTCGTTCGGCCTCGAAACCGATGATGCTGACTTGCCTGAGAAACCCGACGTGGACTCGCTCAACACGAGCAACAGCGTTGGAATCGACCTCGGCATCCT
CAACTACATCCACACAAGCGACGGCAAGACCGTGGACTGGCTCGACCTCGAAGACGACTACGAGCGCCTCCGACGAGAACAGCGTAAGTTGTCTCGAAAG
GAGAAAGGATCGAACAACTACGAGAAACAGCGAGTCGAAGTAGCGAAGGTGAAGCGTCATATTCGTCGGAAGGTGCTGGACTACCAGCACAAACTCACGA
CGTGGCTCGTCAAGGAGTATGACGCCGTGTTCGTGGAAGACCTGAACGTCCAGTGTATGCTTCAGGACGACGGGAACGCTCGGAACAAGCAGGACGTGGC
GTGGCGACAGTTCATCACCTTGCTTGAATACAAGGGAGACTTGCACGGAACGCACGTCGTTCAGGTTGATGCTCGGGGCACGACGAAAGAGTGTGCGTCG
TGCGGTGTAGAGACGGCGAAACCTATCTGGGTTCGTGAGCATTCGTGTCCGGCGTGTGGGTTTGAAACGGATAGGGATGCAAACGCTTCGTTGAACGTCT
TGCAGAGAGGCTTTTCTGCATTAGGGCTGGGATGGCCCGAATCAACGCCCGTGGAGACTGCGCTCCCTACGGATACTCATTCGGTATCTGCAAAGCGCGT
CGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa1021328+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYSHRYHAYPTQAVAERLEYHIDVHRQAYNYTRYEYENVDADNIGSAYKHHYRLPDWKDEFSVFSDVNSKALQRTVTRFYQNLSNLSKKKQNGNKVGKL
KWKSPTEYQSMTYSQSGFELKNTSGRHATLELSKVGDIRIRYHREIHDQAEIKEVTIKKETTGEWFVSFGLETDDADLPEKPDVDSLNTSNSVGIDLGIL
NYIHTSDGKTVDWLDLEDDYERLRREQRKLSRKEKGSNNYEKQRVEVAKVKRHIRRKVLDYQHKLTTWLVKEYDAVFVEDLNVQCMLQDDGNARNKQDVA
WRQFITLLEYKGDLHGTHVVQVDARGTTKECASCGVETAKPIWVREHSCPACGFETDRDANASLNVLQRGFSALGLGWPESTPVETALPTDTHSVSAKRV
VETGSLGA

 

Blast result :
Comments
ISHbo9 is 84% (TnpB) aa similar to ISHli12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159