ISHbo9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001690 | ND | Halogeometricum borinquense | Halogeometricum borinquense DSM 11551 |
DNA section
IS Length : 1344 bp
Ends
Left end : AGAGGTACAAGGAGAATGCCCCGAGGCTTGACCTCGGGGTTGAATCCGACACTCCGTGAAACAAACCATTAAGTTAACACACTTCTAACCAGCAGACAGC II struct. : Yes
Right end : ACGCCCGTGGAGACTGCGCTCCCTACGGATACTCATTCGGTATCTGCAAAGCGCGTCGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACGAACGACGGCT | TTAC | CGGTCTCGATAC | tcac |
ACAAGTTGCAGTT | TTAC | ATCGTCCCGTCG | tcac |
DNA sequence
AGAGGTACAAGGAGAATGCCCCGAGGCTTGACCTCGGGGTTGAATCCGACACTCCGTGAAACAAACCATTAAGTTAACACACTTCTAACCAGCAGACAGC
GATGGAATACAGTCACCGCTACCACGCTTACCCGACACAAGCAGTAGCGGAGCGACTGGAATACCACATCGACGTTCATCGCCAAGCGTACAACTACACT
CGGTACGAATACGAGAACGTTGACGCCGACAACATCGGGTCAGCGTACAAACACCACTACCGACTCCCCGATTGGAAAGACGAGTTCTCTGTGTTCTCCG
ACGTGAACTCGAAGGCTCTGCAACGAACCGTCACACGGTTCTATCAGAATCTCTCGAACCTTTCCAAAAAGAAACAGAACGGAAACAAGGTTGGGAAGTT
GAAGTGGAAGTCTCCGACTGAGTACCAGAGCATGACGTATTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGCCGACACGCGACGTTAGAACTCTCC
AAAGTCGGAGATATTCGTATTCGCTACCACCGTGAAATCCATGACCAAGCAGAAATCAAGGAAGTCACCATCAAGAAGGAGACAACCGGAGAGTGGTTCG
TCTCGTTCGGCCTCGAAACCGATGATGCTGACTTGCCTGAGAAACCCGACGTGGACTCGCTCAACACGAGCAACAGCGTTGGAATCGACCTCGGCATCCT
CAACTACATCCACACAAGCGACGGCAAGACCGTGGACTGGCTCGACCTCGAAGACGACTACGAGCGCCTCCGACGAGAACAGCGTAAGTTGTCTCGAAAG
GAGAAAGGATCGAACAACTACGAGAAACAGCGAGTCGAAGTAGCGAAGGTGAAGCGTCATATTCGTCGGAAGGTGCTGGACTACCAGCACAAACTCACGA
CGTGGCTCGTCAAGGAGTATGACGCCGTGTTCGTGGAAGACCTGAACGTCCAGTGTATGCTTCAGGACGACGGGAACGCTCGGAACAAGCAGGACGTGGC
GTGGCGACAGTTCATCACCTTGCTTGAATACAAGGGAGACTTGCACGGAACGCACGTCGTTCAGGTTGATGCTCGGGGCACGACGAAAGAGTGTGCGTCG
TGCGGTGTAGAGACGGCGAAACCTATCTGGGTTCGTGAGCATTCGTGTCCGGCGTGTGGGTTTGAAACGGATAGGGATGCAAACGCTTCGTTGAACGTCT
TGCAGAGAGGCTTTTCTGCATTAGGGCTGGGATGGCCCGAATCAACGCCCGTGGAGACTGCGCTCCCTACGGATACTCATTCGGTATCTGCAAAGCGCGT
CGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
GATGGAATACAGTCACCGCTACCACGCTTACCCGACACAAGCAGTAGCGGAGCGACTGGAATACCACATCGACGTTCATCGCCAAGCGTACAACTACACT
CGGTACGAATACGAGAACGTTGACGCCGACAACATCGGGTCAGCGTACAAACACCACTACCGACTCCCCGATTGGAAAGACGAGTTCTCTGTGTTCTCCG
ACGTGAACTCGAAGGCTCTGCAACGAACCGTCACACGGTTCTATCAGAATCTCTCGAACCTTTCCAAAAAGAAACAGAACGGAAACAAGGTTGGGAAGTT
GAAGTGGAAGTCTCCGACTGAGTACCAGAGCATGACGTATTCGCAGTCCGGCTTCGAACTCAAAAACACGAGTGGCCGACACGCGACGTTAGAACTCTCC
AAAGTCGGAGATATTCGTATTCGCTACCACCGTGAAATCCATGACCAAGCAGAAATCAAGGAAGTCACCATCAAGAAGGAGACAACCGGAGAGTGGTTCG
TCTCGTTCGGCCTCGAAACCGATGATGCTGACTTGCCTGAGAAACCCGACGTGGACTCGCTCAACACGAGCAACAGCGTTGGAATCGACCTCGGCATCCT
CAACTACATCCACACAAGCGACGGCAAGACCGTGGACTGGCTCGACCTCGAAGACGACTACGAGCGCCTCCGACGAGAACAGCGTAAGTTGTCTCGAAAG
GAGAAAGGATCGAACAACTACGAGAAACAGCGAGTCGAAGTAGCGAAGGTGAAGCGTCATATTCGTCGGAAGGTGCTGGACTACCAGCACAAACTCACGA
CGTGGCTCGTCAAGGAGTATGACGCCGTGTTCGTGGAAGACCTGAACGTCCAGTGTATGCTTCAGGACGACGGGAACGCTCGGAACAAGCAGGACGTGGC
GTGGCGACAGTTCATCACCTTGCTTGAATACAAGGGAGACTTGCACGGAACGCACGTCGTTCAGGTTGATGCTCGGGGCACGACGAAAGAGTGTGCGTCG
TGCGGTGTAGAGACGGCGAAACCTATCTGGGTTCGTGAGCATTCGTGTCCGGCGTGTGGGTTTGAAACGGATAGGGATGCAAACGCTTCGTTGAACGTCT
TGCAGAGAGGCTTTTCTGCATTAGGGCTGGGATGGCCCGAATCAACGCCCGTGGAGACTGCGCTCCCTACGGATACTCATTCGGTATCTGCAAAGCGCGT
CGTGGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 102 | 1328 | + | No |
AG : TnpB
ORF sequence :
MEYSHRYHAYPTQAVAERLEYHIDVHRQAYNYTRYEYENVDADNIGSAYKHHYRLPDWKDEFSVFSDVNSKALQRTVTRFYQNLSNLSKKKQNGNKVGKL
KWKSPTEYQSMTYSQSGFELKNTSGRHATLELSKVGDIRIRYHREIHDQAEIKEVTIKKETTGEWFVSFGLETDDADLPEKPDVDSLNTSNSVGIDLGIL
NYIHTSDGKTVDWLDLEDDYERLRREQRKLSRKEKGSNNYEKQRVEVAKVKRHIRRKVLDYQHKLTTWLVKEYDAVFVEDLNVQCMLQDDGNARNKQDVA
WRQFITLLEYKGDLHGTHVVQVDARGTTKECASCGVETAKPIWVREHSCPACGFETDRDANASLNVLQRGFSALGLGWPESTPVETALPTDTHSVSAKRV
VETGSLGA
KWKSPTEYQSMTYSQSGFELKNTSGRHATLELSKVGDIRIRYHREIHDQAEIKEVTIKKETTGEWFVSFGLETDDADLPEKPDVDSLNTSNSVGIDLGIL
NYIHTSDGKTVDWLDLEDDYERLRREQRKLSRKEKGSNNYEKQRVEVAKVKRHIRRKVLDYQHKLTTWLVKEYDAVFVEDLNVQCMLQDDGNARNKQDVA
WRQFITLLEYKGDLHGTHVVQVDARGTTKECASCGVETAKPIWVREHSCPACGFETDRDANASLNVLQRGFSALGLGWPESTPVETALPTDTHSVSAKRV
VETGSLGA
Blast result :
Comments
ISHbo9 is 84% (TnpB) aa similar to ISHli12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159