ISNpe27
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003373 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 pNATPE01 |
DNA section
IS Length : 1420 bp
Ends
Left end : AGAGGTTGCGAGGCGGATACCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGACACAAACCACGCACGATGGCAGGGCCGACTCCACCACCTC II struct. : Yes
Right end : GGGACGCTGAACGCGAACGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGAGGCTTGACCCCGAGGCGGTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTACTCCAGTCTT | TCAT | CTACCAAGATGG | tgac |
DNA sequence
AGAGGTTGCGAGGCGGATACCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGACACAAACCACGCACGATGGCAGGGCCGACTCCACCACCTC
AAGTAAATACTTTCAAATATCTATAGAAGTAATTATGAAGTATGGAGGTCGTCCGTAACATCCAGCTAAAGCTCGACGTTCCCGAGGACGCTCACAGCGT
TCTCGATGCAACGTTCGAGCAATTCCGTCAAGCGGCCCAACACGTCGCTGACGCTGGATGGAGCGACGACCCCACAGAAATCGAGGACACCAAAAATACG
CTCCACGAACAAACCTACACAGAGGTTCGGGAGCAGACTAGTCTACAAGCCAGTCTCGTCCAATCCGCCCGCAACCTCGCCGCAGACGCACTCGGCAACT
GCAAAGACCGCATCCTCGACGATGGCAAGAAAGCAGGCAAGCCCGAGTTCCGAGGGAGCGTTGTCGTGTACAACGGGCGCACCATCACGTACAACGACGA
CCACGTGACACTCGCCACTGTGGACGACCGCGTGACCGCCGAGTTCGTCACACCTAACGAGGAGGACGGCACGCCGTTTGCGGAGTATTGGACGCCGGAG
TGGGAATGCAAGGAAGCCACGCTCCACAAGCGTGACGGTACGTACTACCTCCACGTCGCCGTGGAGAAAGAAGTCGAACCCGCTGATTCTGGCGACGAGC
AGACCGAGAACGGAGTGGTTCTCGGCGTTGACCTGAACGTGGACGGATACCTCGTCGTCACCAGCACGGGAGCGTTCCTCGGTAATGCGGACTATCTCAA
CCACAAACGCGACGAGTATGAACGTCGGCGCGGCACTCTCCAACAGACAGGCACTCGCTCCGCGCATCTCACCATCAAGAGTATCGGCTCACGGTTCGCC
CGGTGGAGCGCCGACTACCTCCACCGCGTGTCTAAAGCGATTGTGCAGGAAGCCGTGGAGAACGACTGCACGGCTATTGCGTTCGAGAACCTGACGCACA
TCCGTGAGCGTATCTCGAACGCCTTGAAGTTCCAGCAGTGGGCGTTCCGTGAACTTCAACGCCACGTCGAATACAAGGCCGAAGAGTACGGCATCGACGT
GGACGATGTTGCCCCTGCTTACACGTCTCAGCGGTGCAGTCACGGCGAGTGCGGGTTCACGCACGAAGATAATCGAGATGGTGGCGAGTTCGAGTGCCTG
AAATGCGGGAAAGAACTGCACGCGGATTATAACGCCGCTCGGAATATCGGGTGGCGTCTTGTCCAGCACTGGCTCAAGTCTGGTGCTGGACGGGCCACCA
GTCAACTGGCCCTCAAGTCAGGGACGCTGAACGCGAACGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGAGGC
TTGACCCCGAGGCGGTTGAC
AAGTAAATACTTTCAAATATCTATAGAAGTAATTATGAAGTATGGAGGTCGTCCGTAACATCCAGCTAAAGCTCGACGTTCCCGAGGACGCTCACAGCGT
TCTCGATGCAACGTTCGAGCAATTCCGTCAAGCGGCCCAACACGTCGCTGACGCTGGATGGAGCGACGACCCCACAGAAATCGAGGACACCAAAAATACG
CTCCACGAACAAACCTACACAGAGGTTCGGGAGCAGACTAGTCTACAAGCCAGTCTCGTCCAATCCGCCCGCAACCTCGCCGCAGACGCACTCGGCAACT
GCAAAGACCGCATCCTCGACGATGGCAAGAAAGCAGGCAAGCCCGAGTTCCGAGGGAGCGTTGTCGTGTACAACGGGCGCACCATCACGTACAACGACGA
CCACGTGACACTCGCCACTGTGGACGACCGCGTGACCGCCGAGTTCGTCACACCTAACGAGGAGGACGGCACGCCGTTTGCGGAGTATTGGACGCCGGAG
TGGGAATGCAAGGAAGCCACGCTCCACAAGCGTGACGGTACGTACTACCTCCACGTCGCCGTGGAGAAAGAAGTCGAACCCGCTGATTCTGGCGACGAGC
AGACCGAGAACGGAGTGGTTCTCGGCGTTGACCTGAACGTGGACGGATACCTCGTCGTCACCAGCACGGGAGCGTTCCTCGGTAATGCGGACTATCTCAA
CCACAAACGCGACGAGTATGAACGTCGGCGCGGCACTCTCCAACAGACAGGCACTCGCTCCGCGCATCTCACCATCAAGAGTATCGGCTCACGGTTCGCC
CGGTGGAGCGCCGACTACCTCCACCGCGTGTCTAAAGCGATTGTGCAGGAAGCCGTGGAGAACGACTGCACGGCTATTGCGTTCGAGAACCTGACGCACA
TCCGTGAGCGTATCTCGAACGCCTTGAAGTTCCAGCAGTGGGCGTTCCGTGAACTTCAACGCCACGTCGAATACAAGGCCGAAGAGTACGGCATCGACGT
GGACGATGTTGCCCCTGCTTACACGTCTCAGCGGTGCAGTCACGGCGAGTGCGGGTTCACGCACGAAGATAATCGAGATGGTGGCGAGTTCGAGTGCCTG
AAATGCGGGAAAGAACTGCACGCGGATTATAACGCCGCTCGGAATATCGGGTGGCGTCTTGTCCAGCACTGGCTCAAGTCTGGTGCTGGACGGGCCACCA
GTCAACTGGCCCTCAAGTCAGGGACGCTGAACGCGAACGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGAGGC
TTGACCCCGAGGCGGTTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 142 | 1371 | + | No |
AG : TnpB
ORF sequence :
MEVVRNIQLKLDVPEDAHSVLDATFEQFRQAAQHVADAGWSDDPTEIEDTKNTLHEQTYTEVREQTSLQASLVQSARNLAADALGNCKDRILDDGKKAGK
PEFRGSVVVYNGRTITYNDDHVTLATVDDRVTAEFVTPNEEDGTPFAEYWTPEWECKEATLHKRDGTYYLHVAVEKEVEPADSGDEQTENGVVLGVDLNV
DGYLVVTSTGAFLGNADYLNHKRDEYERRRGTLQQTGTRSAHLTIKSIGSRFARWSADYLHRVSKAIVQEAVENDCTAIAFENLTHIRERISNALKFQQW
AFRELQRHVEYKAEEYGIDVDDVAPAYTSQRCSHGECGFTHEDNRDGGEFECLKCGKELHADYNAARNIGWRLVQHWLKSGAGRATSQLALKSGTLNANG
DYTPSALRG
PEFRGSVVVYNGRTITYNDDHVTLATVDDRVTAEFVTPNEEDGTPFAEYWTPEWECKEATLHKRDGTYYLHVAVEKEVEPADSGDEQTENGVVLGVDLNV
DGYLVVTSTGAFLGNADYLNHKRDEYERRRGTLQQTGTRSAHLTIKSIGSRFARWSADYLHRVSKAIVQEAVENDCTAIAFENLTHIRERISNALKFQQW
AFRELQRHVEYKAEEYGIDVDDVAPAYTSQRCSHGECGFTHEDNRDGGEFECLKCGKELHADYNAARNIGWRLVQHWLKSGAGRATSQLALKSGTLNANG
DYTPSALRG
Blast result :
Comments
ISNpe27 is 95% (TnpB) aa similar to ISHhu8.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank