ISNpe27

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003373 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624 pNATPE01
DNA section
IS Length : 1420 bp

Ends


Left end : AGAGGTTGCGAGGCGGATACCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGACACAAACCACGCACGATGGCAGGGCCGACTCCACCACCTC II struct. : Yes
Right end : GGGACGCTGAACGCGAACGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGAGGCTTGACCCCGAGGCGGTTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTACTCCAGTCTTTCATCTACCAAGATGGtgac

DNA sequence

AGAGGTTGCGAGGCGGATACCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGACACAAACCACGCACGATGGCAGGGCCGACTCCACCACCTC
AAGTAAATACTTTCAAATATCTATAGAAGTAATTATGAAGTATGGAGGTCGTCCGTAACATCCAGCTAAAGCTCGACGTTCCCGAGGACGCTCACAGCGT
TCTCGATGCAACGTTCGAGCAATTCCGTCAAGCGGCCCAACACGTCGCTGACGCTGGATGGAGCGACGACCCCACAGAAATCGAGGACACCAAAAATACG
CTCCACGAACAAACCTACACAGAGGTTCGGGAGCAGACTAGTCTACAAGCCAGTCTCGTCCAATCCGCCCGCAACCTCGCCGCAGACGCACTCGGCAACT
GCAAAGACCGCATCCTCGACGATGGCAAGAAAGCAGGCAAGCCCGAGTTCCGAGGGAGCGTTGTCGTGTACAACGGGCGCACCATCACGTACAACGACGA
CCACGTGACACTCGCCACTGTGGACGACCGCGTGACCGCCGAGTTCGTCACACCTAACGAGGAGGACGGCACGCCGTTTGCGGAGTATTGGACGCCGGAG
TGGGAATGCAAGGAAGCCACGCTCCACAAGCGTGACGGTACGTACTACCTCCACGTCGCCGTGGAGAAAGAAGTCGAACCCGCTGATTCTGGCGACGAGC
AGACCGAGAACGGAGTGGTTCTCGGCGTTGACCTGAACGTGGACGGATACCTCGTCGTCACCAGCACGGGAGCGTTCCTCGGTAATGCGGACTATCTCAA
CCACAAACGCGACGAGTATGAACGTCGGCGCGGCACTCTCCAACAGACAGGCACTCGCTCCGCGCATCTCACCATCAAGAGTATCGGCTCACGGTTCGCC
CGGTGGAGCGCCGACTACCTCCACCGCGTGTCTAAAGCGATTGTGCAGGAAGCCGTGGAGAACGACTGCACGGCTATTGCGTTCGAGAACCTGACGCACA
TCCGTGAGCGTATCTCGAACGCCTTGAAGTTCCAGCAGTGGGCGTTCCGTGAACTTCAACGCCACGTCGAATACAAGGCCGAAGAGTACGGCATCGACGT
GGACGATGTTGCCCCTGCTTACACGTCTCAGCGGTGCAGTCACGGCGAGTGCGGGTTCACGCACGAAGATAATCGAGATGGTGGCGAGTTCGAGTGCCTG
AAATGCGGGAAAGAACTGCACGCGGATTATAACGCCGCTCGGAATATCGGGTGGCGTCTTGTCCAGCACTGGCTCAAGTCTGGTGCTGGACGGGCCACCA
GTCAACTGGCCCTCAAGTCAGGGACGCTGAACGCGAACGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGAGGC
TTGACCCCGAGGCGGTTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa1421371+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVVRNIQLKLDVPEDAHSVLDATFEQFRQAAQHVADAGWSDDPTEIEDTKNTLHEQTYTEVREQTSLQASLVQSARNLAADALGNCKDRILDDGKKAGK
PEFRGSVVVYNGRTITYNDDHVTLATVDDRVTAEFVTPNEEDGTPFAEYWTPEWECKEATLHKRDGTYYLHVAVEKEVEPADSGDEQTENGVVLGVDLNV
DGYLVVTSTGAFLGNADYLNHKRDEYERRRGTLQQTGTRSAHLTIKSIGSRFARWSADYLHRVSKAIVQEAVENDCTAIAFENLTHIRERISNALKFQQW
AFRELQRHVEYKAEEYGIDVDDVAPAYTSQRCSHGECGFTHEDNRDGGEFECLKCGKELHADYNAARNIGWRLVQHWLKSGAGRATSQLALKSGTLNANG
DYTPSALRG

 

Blast result :
Comments
ISNpe27 is 95% (TnpB) aa similar to ISHhu8.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank