ISNpe26

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003373 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624 pNATPE01
DNA section
IS Length : 1468 bp

Ends


Left end : CAGGCGGTACGAGGCGGATGTCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGAAACTAACTACGTTCTATAGATAGGCCAGCTCCCCCCACT II struct. : Yes
Right end : GGGACGTTGAGCGTGAACGGCGACTACACGCCTACCGAACTACTCGGTTAGAACGGGAGTCCACTGACAAGCCTCGGGGCTTGACCCCGAGGTGGTTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGAGTGTCGTATTTCAGGAGAATATACGtgac

DNA sequence

CAGGCGGTACGAGGCGGATGTCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGAAACTAACTACGTTCTATAGATAGGCCAGCTCCCCCCACT
CTACTAATAAACTTTTATTAGGCAACAAAGGTAAATGTGAGCCACAGATGGACGATGCGCTACGACGCACCGTGCCGGTCAAACTCGACGTACCAGAAGA
GCGTCGTGGCGACCTCCATCAAACCAAAGCTCAGTTCTTGCACTGCGCCAACCGCACGAGCGAGTGGGCGTGGCGCTACGACGACTACTGTGTCACCAAC
AAGAGCAAAGCCGAAAACGCCCTGTACGACGAGTTGCGCGAGGAAACCGACCTCACCGCCAACCTCGTCCAGAAAGGCATTCGACGCGCCATCGAAGCCG
TCCAAAGCGGCGTCGAGAAACTGAAGCAAGGCGAACAAACGAGTCAACCCGAGTTCGACTCGTGGAGCGTCGTCTACGACAAACGCTCTGCGTCATTCAA
CGACGACTACGCCACGCTCTCTACCCCCGACGGCAGAGTCACTGCTGAATACGTCCTCCCACCCGAGGACGAACGCGAAGACACGCCGTTCGGCAGGTAC
TACGAGAGTGAGGCGTGGGATGCGTCGATCGCCACGCTTCAGTACGACGAACAGGAGGATGCGTTCTACCTGCATGTCACGCTGAAGAACCCGAACTACG
AGGGTGACGGAACGGAACGCCAAGAAAGCGAGTCACGTAGTGAGGGTGCCGAGAACGGAGTGGTTCTCGGTGTTGACCTGAACGTGACTGGCGCGTTCGC
TGTCACCTCCACAGGCGAGTTCATCGGCAGTGCGGACTCCCTCACCCACAAGCGCAACCAGTACGAACAACGCCGCGCCAAACTGCAACAGACGGGTACA
CGGTCGGCTCACCTCACGATGCAGTCCATCGGCAGTCGGCTCTCGGATTGGTCATTGGACTGGCTCCACAACCGCGCCAACGACCTCATCACGGAAGCCC
AAGACGCGGACGTGGACGGCATCATTTTCGAGACCCTTGACCACATCCGCGAGAACATTGCGAACGGGTCGAAGTTCCAGCAGTGGGCCTACGCGAAGTT
CGTGGAACTCGTCGAGTACAAGGTCGAGTCTACGGAGTTGTTCGTGGATACCGTGAATCCGGCGTACACGAGTCAGCGTTGCTCGCACTGTGGGTTTACC
CACGAGGACAATCGTGACGACAAGGCGTTTGAGTGCCAATCATGTGGGTACGAAGTGAACGCGGATTATAATGCCGCGAAGAACATCGCAAATCGGTACT
GCGGGTATATCCATCGCGGGCAGAAGTCTCGCGGTGGATGGGCCACCAGTCAACTGGCCCTCAAGTCAGGGACGTTGAGCGTGAACGGCGACTACACGCC
TACCGAACTACTCGGTTAGAACGGGAGTCCACTGACAAGCCTCGGGGCTTGACCCCGAGGTGGTTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1272 bp423 aa1481419+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MDDALRRTVPVKLDVPEERRGDLHQTKAQFLHCANRTSEWAWRYDDYCVTNKSKAENALYDELREETDLTANLVQKGIRRAIEAVQSGVEKLKQGEQTSQ
PEFDSWSVVYDKRSASFNDDYATLSTPDGRVTAEYVLPPEDEREDTPFGRYYESEAWDASIATLQYDEQEDAFYLHVTLKNPNYEGDGTERQESESRSEG
AENGVVLGVDLNVTGAFAVTSTGEFIGSADSLTHKRNQYEQRRAKLQQTGTRSAHLTMQSIGSRLSDWSLDWLHNRANDLITEAQDADVDGIIFETLDHI
RENIANGSKFQQWAYAKFVELVEYKVESTELFVDTVNPAYTSQRCSHCGFTHEDNRDDKAFECQSCGYEVNADYNAAKNIANRYCGYIHRGQKSRGGWAT
SQLALKSGTLSVNGDYTPTELLG

 

Blast result :
Comments
ISNpe26 is 70% (TnpB) aa similar to ISHvo19.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank