ISNpe26
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003373 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 pNATPE01 |
DNA section
IS Length : 1468 bp
Ends
Left end : CAGGCGGTACGAGGCGGATGTCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGAAACTAACTACGTTCTATAGATAGGCCAGCTCCCCCCACT II struct. : Yes
Right end : GGGACGTTGAGCGTGAACGGCGACTACACGCCTACCGAACTACTCGGTTAGAACGGGAGTCCACTGACAAGCCTCGGGGCTTGACCCCGAGGTGGTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGAGTGTCGTAT | TTCA | GGAGAATATACG | tgac |
DNA sequence
CAGGCGGTACGAGGCGGATGTCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGAAACTAACTACGTTCTATAGATAGGCCAGCTCCCCCCACT
CTACTAATAAACTTTTATTAGGCAACAAAGGTAAATGTGAGCCACAGATGGACGATGCGCTACGACGCACCGTGCCGGTCAAACTCGACGTACCAGAAGA
GCGTCGTGGCGACCTCCATCAAACCAAAGCTCAGTTCTTGCACTGCGCCAACCGCACGAGCGAGTGGGCGTGGCGCTACGACGACTACTGTGTCACCAAC
AAGAGCAAAGCCGAAAACGCCCTGTACGACGAGTTGCGCGAGGAAACCGACCTCACCGCCAACCTCGTCCAGAAAGGCATTCGACGCGCCATCGAAGCCG
TCCAAAGCGGCGTCGAGAAACTGAAGCAAGGCGAACAAACGAGTCAACCCGAGTTCGACTCGTGGAGCGTCGTCTACGACAAACGCTCTGCGTCATTCAA
CGACGACTACGCCACGCTCTCTACCCCCGACGGCAGAGTCACTGCTGAATACGTCCTCCCACCCGAGGACGAACGCGAAGACACGCCGTTCGGCAGGTAC
TACGAGAGTGAGGCGTGGGATGCGTCGATCGCCACGCTTCAGTACGACGAACAGGAGGATGCGTTCTACCTGCATGTCACGCTGAAGAACCCGAACTACG
AGGGTGACGGAACGGAACGCCAAGAAAGCGAGTCACGTAGTGAGGGTGCCGAGAACGGAGTGGTTCTCGGTGTTGACCTGAACGTGACTGGCGCGTTCGC
TGTCACCTCCACAGGCGAGTTCATCGGCAGTGCGGACTCCCTCACCCACAAGCGCAACCAGTACGAACAACGCCGCGCCAAACTGCAACAGACGGGTACA
CGGTCGGCTCACCTCACGATGCAGTCCATCGGCAGTCGGCTCTCGGATTGGTCATTGGACTGGCTCCACAACCGCGCCAACGACCTCATCACGGAAGCCC
AAGACGCGGACGTGGACGGCATCATTTTCGAGACCCTTGACCACATCCGCGAGAACATTGCGAACGGGTCGAAGTTCCAGCAGTGGGCCTACGCGAAGTT
CGTGGAACTCGTCGAGTACAAGGTCGAGTCTACGGAGTTGTTCGTGGATACCGTGAATCCGGCGTACACGAGTCAGCGTTGCTCGCACTGTGGGTTTACC
CACGAGGACAATCGTGACGACAAGGCGTTTGAGTGCCAATCATGTGGGTACGAAGTGAACGCGGATTATAATGCCGCGAAGAACATCGCAAATCGGTACT
GCGGGTATATCCATCGCGGGCAGAAGTCTCGCGGTGGATGGGCCACCAGTCAACTGGCCCTCAAGTCAGGGACGTTGAGCGTGAACGGCGACTACACGCC
TACCGAACTACTCGGTTAGAACGGGAGTCCACTGACAAGCCTCGGGGCTTGACCCCGAGGTGGTTGAC
CTACTAATAAACTTTTATTAGGCAACAAAGGTAAATGTGAGCCACAGATGGACGATGCGCTACGACGCACCGTGCCGGTCAAACTCGACGTACCAGAAGA
GCGTCGTGGCGACCTCCATCAAACCAAAGCTCAGTTCTTGCACTGCGCCAACCGCACGAGCGAGTGGGCGTGGCGCTACGACGACTACTGTGTCACCAAC
AAGAGCAAAGCCGAAAACGCCCTGTACGACGAGTTGCGCGAGGAAACCGACCTCACCGCCAACCTCGTCCAGAAAGGCATTCGACGCGCCATCGAAGCCG
TCCAAAGCGGCGTCGAGAAACTGAAGCAAGGCGAACAAACGAGTCAACCCGAGTTCGACTCGTGGAGCGTCGTCTACGACAAACGCTCTGCGTCATTCAA
CGACGACTACGCCACGCTCTCTACCCCCGACGGCAGAGTCACTGCTGAATACGTCCTCCCACCCGAGGACGAACGCGAAGACACGCCGTTCGGCAGGTAC
TACGAGAGTGAGGCGTGGGATGCGTCGATCGCCACGCTTCAGTACGACGAACAGGAGGATGCGTTCTACCTGCATGTCACGCTGAAGAACCCGAACTACG
AGGGTGACGGAACGGAACGCCAAGAAAGCGAGTCACGTAGTGAGGGTGCCGAGAACGGAGTGGTTCTCGGTGTTGACCTGAACGTGACTGGCGCGTTCGC
TGTCACCTCCACAGGCGAGTTCATCGGCAGTGCGGACTCCCTCACCCACAAGCGCAACCAGTACGAACAACGCCGCGCCAAACTGCAACAGACGGGTACA
CGGTCGGCTCACCTCACGATGCAGTCCATCGGCAGTCGGCTCTCGGATTGGTCATTGGACTGGCTCCACAACCGCGCCAACGACCTCATCACGGAAGCCC
AAGACGCGGACGTGGACGGCATCATTTTCGAGACCCTTGACCACATCCGCGAGAACATTGCGAACGGGTCGAAGTTCCAGCAGTGGGCCTACGCGAAGTT
CGTGGAACTCGTCGAGTACAAGGTCGAGTCTACGGAGTTGTTCGTGGATACCGTGAATCCGGCGTACACGAGTCAGCGTTGCTCGCACTGTGGGTTTACC
CACGAGGACAATCGTGACGACAAGGCGTTTGAGTGCCAATCATGTGGGTACGAAGTGAACGCGGATTATAATGCCGCGAAGAACATCGCAAATCGGTACT
GCGGGTATATCCATCGCGGGCAGAAGTCTCGCGGTGGATGGGCCACCAGTCAACTGGCCCTCAAGTCAGGGACGTTGAGCGTGAACGGCGACTACACGCC
TACCGAACTACTCGGTTAGAACGGGAGTCCACTGACAAGCCTCGGGGCTTGACCCCGAGGTGGTTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1272 bp | 423 aa | 148 | 1419 | + | No |
AG : TnpB
ORF sequence :
MDDALRRTVPVKLDVPEERRGDLHQTKAQFLHCANRTSEWAWRYDDYCVTNKSKAENALYDELREETDLTANLVQKGIRRAIEAVQSGVEKLKQGEQTSQ
PEFDSWSVVYDKRSASFNDDYATLSTPDGRVTAEYVLPPEDEREDTPFGRYYESEAWDASIATLQYDEQEDAFYLHVTLKNPNYEGDGTERQESESRSEG
AENGVVLGVDLNVTGAFAVTSTGEFIGSADSLTHKRNQYEQRRAKLQQTGTRSAHLTMQSIGSRLSDWSLDWLHNRANDLITEAQDADVDGIIFETLDHI
RENIANGSKFQQWAYAKFVELVEYKVESTELFVDTVNPAYTSQRCSHCGFTHEDNRDDKAFECQSCGYEVNADYNAAKNIANRYCGYIHRGQKSRGGWAT
SQLALKSGTLSVNGDYTPTELLG
PEFDSWSVVYDKRSASFNDDYATLSTPDGRVTAEYVLPPEDEREDTPFGRYYESEAWDASIATLQYDEQEDAFYLHVTLKNPNYEGDGTERQESESRSEG
AENGVVLGVDLNVTGAFAVTSTGEFIGSADSLTHKRNQYEQRRAKLQQTGTRSAHLTMQSIGSRLSDWSLDWLHNRANDLITEAQDADVDGIIFETLDHI
RENIANGSKFQQWAYAKFVELVEYKVESTELFVDTVNPAYTSQRCSHCGFTHEDNRDDKAFECQSCGYEVNADYNAAKNIANRYCGYIHRGQKSRGGWAT
SQLALKSGTLSVNGDYTPTELLG
Blast result :
Comments
ISNpe26 is 70% (TnpB) aa similar to ISHvo19.
References
1] Pfeiffer, F. (2015) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank