ISHvo24
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001955 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV4 |
DNA section
IS Length : 1462 bp
Ends
Left end : CGTGATGCAAGGTGGAGCTTTCGCCCTCACGGGGCAAGCGAAGCGAGCGATTGTGTGGAGAGGAAACCGACACGATACTGTACCACCCACGCTCGATGGG II struct. : No
Right end : GCCTTCCGCCGACAGCGGACAGAACGGGAGTCCACGCGAAAGCCCCACCCGCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGATGGGGCAGTTTAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGACGATGCCGT | TCAG | TATCGACTTTCT | ttac |
DNA sequence
CGTGATGCAAGGTGGAGCTTTCGCCCTCACGGGGCAAGCGAAGCGAGCGATTGTGTGGAGAGGAAACCGACACGATACTGTACCACCCACGCTCGATGGG
TTACCGACTCCCACCGAATCATGGCTAATATAAAGACATGGCACTACATCTGAACCACGGATGGAGGTACGTCGCACCGTCCCCGTCAAACTCGACGTGG
CCGACAGCGACGCCGACCTCCTCCGCGAAACCATTTCCGAGTTCCTGTGGGCCGCCAACTACGTCGTCGACCACGCATGGCAAGGCGAGTACAAGACTAC
GAGCAAAGCCGAACTTCAACGCGAAACCTACGACGACGTGCGGGCCGAAACGAGGCTTCAAGCGAATCTCGTCCAGAACGCCCGCAACAAGGCCGCCGAT
GCCGTACAGAGCGTCGTCGCTCGGTGGAAGCACGGTGACTACGCGGGAAAACCGCACTTCACCGCCCCGACGCTCGTCTACGACAAGCGGTGTGCGACGT
TCAACGACGACCACGCCACGCTTTCGACCGTCGAAGGACGAATCACCGCCGAATACGTCCTCCCCGACGAGAACCGCGAGACACCACACTCGGAGTATCT
ATACAACGACGACTACGAAGTGACGGGCGCAGAACTGCACTACCGCGACGGCGAGTTCTACCTTCACGTCCGAACAAAGGCGGACGTGGAGTTCGAGACT
ACCGACGACGGCAACGACGAGCACAGCACAGTCCTCGGCGTTGACCTCGGCATCGAAAACATCGCCGTCACCTCCACAGGGACATTCTGGAACGGGTCGG
AGCTGAATCACTGGCACCGCGAGTTCGAGAAGCGGCGCGGGTCACTCCACCAGCGTGGCACGCGGGCCGCCCACGAAACCATCCAGTCGGTTGGACGCAC
CGAGACGGGTCGGTACGACCACTTCTTACACACTGTCTCGAAGGAACTCGTTGCGGAAGCCGTCGAGTATGGCTGCGACGTGATCGCGTTCGAGAACCTG
ACGGGGATTCGTGAGCGGATGCCCAACGCCAAAAAGTTCCACGCGTGGGCGTTCCGACGCCTGTTCAAGTATGTCGAGTACAAGGCCGAAGTGGTCGGCA
TCTCGGTCGAACAAGTGAGTCCCGCCTACACCTCCCAGCGGTGTTCCAAGTGCGGGTTCACCCACGAGAACAACCGTCCAACCTCGGACGGGCAGAACGT
ATTCGAGTGCCTGAAGTGTGGATACTCGCCCCACGCAGACTACAACGCGGCGAAGAATATTGGCCTGAAGTATCTCCGCTCGGCGCAAAAGTCGTCGGGC
GGAGGCGCACCCGTAAACGTGCGCTTGAATCGCGGGGCGTTGAACGTGAATGGCGATTACGAGCCTTCCGCCGACAGCGGACAGAACGGGAGTCCACGCG
AAAGCCCCACCCGCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGATGGGGCAGTTTAC
TTACCGACTCCCACCGAATCATGGCTAATATAAAGACATGGCACTACATCTGAACCACGGATGGAGGTACGTCGCACCGTCCCCGTCAAACTCGACGTGG
CCGACAGCGACGCCGACCTCCTCCGCGAAACCATTTCCGAGTTCCTGTGGGCCGCCAACTACGTCGTCGACCACGCATGGCAAGGCGAGTACAAGACTAC
GAGCAAAGCCGAACTTCAACGCGAAACCTACGACGACGTGCGGGCCGAAACGAGGCTTCAAGCGAATCTCGTCCAGAACGCCCGCAACAAGGCCGCCGAT
GCCGTACAGAGCGTCGTCGCTCGGTGGAAGCACGGTGACTACGCGGGAAAACCGCACTTCACCGCCCCGACGCTCGTCTACGACAAGCGGTGTGCGACGT
TCAACGACGACCACGCCACGCTTTCGACCGTCGAAGGACGAATCACCGCCGAATACGTCCTCCCCGACGAGAACCGCGAGACACCACACTCGGAGTATCT
ATACAACGACGACTACGAAGTGACGGGCGCAGAACTGCACTACCGCGACGGCGAGTTCTACCTTCACGTCCGAACAAAGGCGGACGTGGAGTTCGAGACT
ACCGACGACGGCAACGACGAGCACAGCACAGTCCTCGGCGTTGACCTCGGCATCGAAAACATCGCCGTCACCTCCACAGGGACATTCTGGAACGGGTCGG
AGCTGAATCACTGGCACCGCGAGTTCGAGAAGCGGCGCGGGTCACTCCACCAGCGTGGCACGCGGGCCGCCCACGAAACCATCCAGTCGGTTGGACGCAC
CGAGACGGGTCGGTACGACCACTTCTTACACACTGTCTCGAAGGAACTCGTTGCGGAAGCCGTCGAGTATGGCTGCGACGTGATCGCGTTCGAGAACCTG
ACGGGGATTCGTGAGCGGATGCCCAACGCCAAAAAGTTCCACGCGTGGGCGTTCCGACGCCTGTTCAAGTATGTCGAGTACAAGGCCGAAGTGGTCGGCA
TCTCGGTCGAACAAGTGAGTCCCGCCTACACCTCCCAGCGGTGTTCCAAGTGCGGGTTCACCCACGAGAACAACCGTCCAACCTCGGACGGGCAGAACGT
ATTCGAGTGCCTGAAGTGTGGATACTCGCCCCACGCAGACTACAACGCGGCGAAGAATATTGGCCTGAAGTATCTCCGCTCGGCGCAAAAGTCGTCGGGC
GGAGGCGCACCCGTAAACGTGCGCTTGAATCGCGGGGCGTTGAACGTGAATGGCGATTACGAGCCTTCCGCCGACAGCGGACAGAACGGGAGTCCACGCG
AAAGCCCCACCCGCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGATGGGGCAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 161 | 1447 | + | No |
AG : TnpB
ORF sequence :
MEVRRTVPVKLDVADSDADLLRETISEFLWAANYVVDHAWQGEYKTTSKAELQRETYDDVRAETRLQANLVQNARNKAADAVQSVVARWKHGDYAGKPHF
TAPTLVYDKRCATFNDDHATLSTVEGRITAEYVLPDENRETPHSEYLYNDDYEVTGAELHYRDGEFYLHVRTKADVEFETTDDGNDEHSTVLGVDLGIEN
IAVTSTGTFWNGSELNHWHREFEKRRGSLHQRGTRAAHETIQSVGRTETGRYDHFLHTVSKELVAEAVEYGCDVIAFENLTGIRERMPNAKKFHAWAFRR
LFKYVEYKAEVVGISVEQVSPAYTSQRCSKCGFTHENNRPTSDGQNVFECLKCGYSPHADYNAAKNIGLKYLRSAQKSSGGGAPVNVRLNRGALNVNGDY
EPSADSGQNGSPRESPTRNEANGEAVSE
TAPTLVYDKRCATFNDDHATLSTVEGRITAEYVLPDENRETPHSEYLYNDDYEVTGAELHYRDGEFYLHVRTKADVEFETTDDGNDEHSTVLGVDLGIEN
IAVTSTGTFWNGSELNHWHREFEKRRGSLHQRGTRAAHETIQSVGRTETGRYDHFLHTVSKELVAEAVEYGCDVIAFENLTGIRERMPNAKKFHAWAFRR
LFKYVEYKAEVVGISVEQVSPAYTSQRCSKCGFTHENNRPTSDGQNVFECLKCGYSPHADYNAAKNIGLKYLRSAQKSSGGGAPVNVRLNRGALNVNGDY
EPSADSGQNGSPRESPTRNEANGEAVSE
Blast result :
Comments
ISHvo24 is 80% (TnpB) aa similar to ISNph16.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605