ISHvo24

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001955 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV4
DNA section
IS Length : 1462 bp

Ends


Left end : CGTGATGCAAGGTGGAGCTTTCGCCCTCACGGGGCAAGCGAAGCGAGCGATTGTGTGGAGAGGAAACCGACACGATACTGTACCACCCACGCTCGATGGG II struct. : No
Right end : GCCTTCCGCCGACAGCGGACAGAACGGGAGTCCACGCGAAAGCCCCACCCGCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGATGGGGCAGTTTAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGACGATGCCGTTCAGTATCGACTTTCTttac

DNA sequence

CGTGATGCAAGGTGGAGCTTTCGCCCTCACGGGGCAAGCGAAGCGAGCGATTGTGTGGAGAGGAAACCGACACGATACTGTACCACCCACGCTCGATGGG
TTACCGACTCCCACCGAATCATGGCTAATATAAAGACATGGCACTACATCTGAACCACGGATGGAGGTACGTCGCACCGTCCCCGTCAAACTCGACGTGG
CCGACAGCGACGCCGACCTCCTCCGCGAAACCATTTCCGAGTTCCTGTGGGCCGCCAACTACGTCGTCGACCACGCATGGCAAGGCGAGTACAAGACTAC
GAGCAAAGCCGAACTTCAACGCGAAACCTACGACGACGTGCGGGCCGAAACGAGGCTTCAAGCGAATCTCGTCCAGAACGCCCGCAACAAGGCCGCCGAT
GCCGTACAGAGCGTCGTCGCTCGGTGGAAGCACGGTGACTACGCGGGAAAACCGCACTTCACCGCCCCGACGCTCGTCTACGACAAGCGGTGTGCGACGT
TCAACGACGACCACGCCACGCTTTCGACCGTCGAAGGACGAATCACCGCCGAATACGTCCTCCCCGACGAGAACCGCGAGACACCACACTCGGAGTATCT
ATACAACGACGACTACGAAGTGACGGGCGCAGAACTGCACTACCGCGACGGCGAGTTCTACCTTCACGTCCGAACAAAGGCGGACGTGGAGTTCGAGACT
ACCGACGACGGCAACGACGAGCACAGCACAGTCCTCGGCGTTGACCTCGGCATCGAAAACATCGCCGTCACCTCCACAGGGACATTCTGGAACGGGTCGG
AGCTGAATCACTGGCACCGCGAGTTCGAGAAGCGGCGCGGGTCACTCCACCAGCGTGGCACGCGGGCCGCCCACGAAACCATCCAGTCGGTTGGACGCAC
CGAGACGGGTCGGTACGACCACTTCTTACACACTGTCTCGAAGGAACTCGTTGCGGAAGCCGTCGAGTATGGCTGCGACGTGATCGCGTTCGAGAACCTG
ACGGGGATTCGTGAGCGGATGCCCAACGCCAAAAAGTTCCACGCGTGGGCGTTCCGACGCCTGTTCAAGTATGTCGAGTACAAGGCCGAAGTGGTCGGCA
TCTCGGTCGAACAAGTGAGTCCCGCCTACACCTCCCAGCGGTGTTCCAAGTGCGGGTTCACCCACGAGAACAACCGTCCAACCTCGGACGGGCAGAACGT
ATTCGAGTGCCTGAAGTGTGGATACTCGCCCCACGCAGACTACAACGCGGCGAAGAATATTGGCCTGAAGTATCTCCGCTCGGCGCAAAAGTCGTCGGGC
GGAGGCGCACCCGTAAACGTGCGCTTGAATCGCGGGGCGTTGAACGTGAATGGCGATTACGAGCCTTCCGCCGACAGCGGACAGAACGGGAGTCCACGCG
AAAGCCCCACCCGCAACGAAGCGAACGGCGAAGCCGTGAGCGAGTAGGATGGGGCAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa1611447+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVRRTVPVKLDVADSDADLLRETISEFLWAANYVVDHAWQGEYKTTSKAELQRETYDDVRAETRLQANLVQNARNKAADAVQSVVARWKHGDYAGKPHF
TAPTLVYDKRCATFNDDHATLSTVEGRITAEYVLPDENRETPHSEYLYNDDYEVTGAELHYRDGEFYLHVRTKADVEFETTDDGNDEHSTVLGVDLGIEN
IAVTSTGTFWNGSELNHWHREFEKRRGSLHQRGTRAAHETIQSVGRTETGRYDHFLHTVSKELVAEAVEYGCDVIAFENLTGIRERMPNAKKFHAWAFRR
LFKYVEYKAEVVGISVEQVSPAYTSQRCSKCGFTHENNRPTSDGQNVFECLKCGYSPHADYNAAKNIGLKYLRSAQKSSGGGAPVNVRLNRGALNVNGDY
EPSADSGQNGSPRESPTRNEANGEAVSE

 

Blast result :
Comments
ISHvo24 is 80% (TnpB) aa similar to ISNph16.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605