ISHtu5
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001860 | ND | Haloterrigena turkmenica | Haloterrigena turkmenica DSM 5511 |
DNA section
IS Length : 1435 bp
Ends
Left end : AGCGGTAGCAGCGCGGAATCCCACGGCTTTAGCCGTGGGAGGAAGCGCGTCACTTGTGAGTACAACCACGCTTCTAGCCACGACTGACTCCCGAACATAG II struct. : Yes
Right end : ACAATGACCGTGAACGCCAGCGATGTGGCGTCCGACACCTACGTGTCGGCAGAACGGGAGTCCACTGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCCGAAGTGCCG | TCAC | GAAGCCATACAA | tgac |
DNA sequence
AGCGGTAGCAGCGCGGAATCCCACGGCTTTAGCCGTGGGAGGAAGCGCGTCACTTGTGAGTACAACCACGCTTCTAGCCACGACTGACTCCCGAACATAG
TCAAAACTATTAATAAAGAAAATCGTCACAATGTGACGTATATGGCGTGGAAGGTCACACGCACTGTCCGAGTCCGACTCGAGGTGCCCGACGACCGCAA
GAGCGACCTCCACGCCACTAACGACCGCTTCCACTACTGCGCAAACCGCACCAGCGAGTGGGCGTGGCGCTACCCAGACGAGGACTGCATCACGAGCAAG
TCAAAAGCCGAAGACGCCCTCTACGAAGACCTCCGCGAGGAAACCGACTATCTCCACGCCAACCTCGTCCAGAAGGCCATCAAACGCGCCATCAAAGACA
TCGACAACGCGGTAGACAGGCTTGCAGACGCGGAAAACGTCAGCCAACCCGAGTACACGACGTTCAGTCTCGTCTACGACAAGCGTGCCGCCACGTACCA
CCGCGACCATGTCAGTCTCGCCACGCCCAACGGCCGTGTCGAATGCGAGTACGACCTCCCGGAGAACCCTGAAGGCACCCCTCACGGCGAGTACCTGCTC
AACGAGGATTACTCGTTCAGTACGAGCACCGTCCACTACGATAGCGAAGCCGACGAGTTCTACCTTAATGCGGTGATGAAGCAGGAATTCGACGTTGAGA
GTCCTGAGAAAGCCGAGGATTCGAAAGTCCTCGGCGTGGACTGTAACGTCGACGACCACATCGCCGTTACTTCAACGGGCAAGTTCGTCGGTAATGCGGA
CTACCTTAACCACCAGCGTCGTGAGTTCGAGAAACGGCGTGCTAGCCTCCAGCAAATGGGTACGCGTAGTGCCCATCTGACCTACCAGCGTATCGGTGAT
CGGTTCGGACGGTGGAGCCGTGACTCCCTCCATCGCGTATCCAAAGAAATCGTTCAAGAAGCCTGCCGCCACGACTGCACGCACATCGCATTCGAGAACT
TGGAACGGATTCGAGAGCACATCAGCGACAGCAAGAAGTTCCAGCAGTGGGCGTTCAACGCCGTCCAGACGCAGGTTGCGTACAAGGCCGAAGAGTATGG
TATCGTCGTGAAGACGGTGAACCCGCAGTACACGAGCCAGCAATGCTCGAAGTGTGGCTGTACGCTTGAGGAGAACCGCGATGGCCAACACTTCGAGTGT
CTTGACTGCTCCTATACGGCGAATTCGGATTACAATGCAGCGAAGAACGTAGCACGGAAGCTCGCGCTCAAGCTCCAGCGGGGGCAGAAGTCCCCCACTG
GAGGGGCGTTCTGTCAGTACGCCCTGAAGTCAGGGACAATGACCGTGAACGCCAGCGATGTGGCGTCCGACACCTACGTGTCGGCAGAACGGGAGTCCAC
TGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC
TCAAAACTATTAATAAAGAAAATCGTCACAATGTGACGTATATGGCGTGGAAGGTCACACGCACTGTCCGAGTCCGACTCGAGGTGCCCGACGACCGCAA
GAGCGACCTCCACGCCACTAACGACCGCTTCCACTACTGCGCAAACCGCACCAGCGAGTGGGCGTGGCGCTACCCAGACGAGGACTGCATCACGAGCAAG
TCAAAAGCCGAAGACGCCCTCTACGAAGACCTCCGCGAGGAAACCGACTATCTCCACGCCAACCTCGTCCAGAAGGCCATCAAACGCGCCATCAAAGACA
TCGACAACGCGGTAGACAGGCTTGCAGACGCGGAAAACGTCAGCCAACCCGAGTACACGACGTTCAGTCTCGTCTACGACAAGCGTGCCGCCACGTACCA
CCGCGACCATGTCAGTCTCGCCACGCCCAACGGCCGTGTCGAATGCGAGTACGACCTCCCGGAGAACCCTGAAGGCACCCCTCACGGCGAGTACCTGCTC
AACGAGGATTACTCGTTCAGTACGAGCACCGTCCACTACGATAGCGAAGCCGACGAGTTCTACCTTAATGCGGTGATGAAGCAGGAATTCGACGTTGAGA
GTCCTGAGAAAGCCGAGGATTCGAAAGTCCTCGGCGTGGACTGTAACGTCGACGACCACATCGCCGTTACTTCAACGGGCAAGTTCGTCGGTAATGCGGA
CTACCTTAACCACCAGCGTCGTGAGTTCGAGAAACGGCGTGCTAGCCTCCAGCAAATGGGTACGCGTAGTGCCCATCTGACCTACCAGCGTATCGGTGAT
CGGTTCGGACGGTGGAGCCGTGACTCCCTCCATCGCGTATCCAAAGAAATCGTTCAAGAAGCCTGCCGCCACGACTGCACGCACATCGCATTCGAGAACT
TGGAACGGATTCGAGAGCACATCAGCGACAGCAAGAAGTTCCAGCAGTGGGCGTTCAACGCCGTCCAGACGCAGGTTGCGTACAAGGCCGAAGAGTATGG
TATCGTCGTGAAGACGGTGAACCCGCAGTACACGAGCCAGCAATGCTCGAAGTGTGGCTGTACGCTTGAGGAGAACCGCGATGGCCAACACTTCGAGTGT
CTTGACTGCTCCTATACGGCGAATTCGGATTACAATGCAGCGAAGAACGTAGCACGGAAGCTCGCGCTCAAGCTCCAGCGGGGGCAGAAGTCCCCCACTG
GAGGGGCGTTCTGTCAGTACGCCCTGAAGTCAGGGACAATGACCGTGAACGCCAGCGATGTGGCGTCCGACACCTACGTGTCGGCAGAACGGGAGTCCAC
TGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1293 bp | 430 aa | 142 | 1434 | + | No |
AG : TnpB
ORF sequence :
MAWKVTRTVRVRLEVPDDRKSDLHATNDRFHYCANRTSEWAWRYPDEDCITSKSKAEDALYEDLREETDYLHANLVQKAIKRAIKDIDNAVDRLADAENV
SQPEYTTFSLVYDKRAATYHRDHVSLATPNGRVECEYDLPENPEGTPHGEYLLNEDYSFSTSTVHYDSEADEFYLNAVMKQEFDVESPEKAEDSKVLGVD
CNVDDHIAVTSTGKFVGNADYLNHQRREFEKRRASLQQMGTRSAHLTYQRIGDRFGRWSRDSLHRVSKEIVQEACRHDCTHIAFENLERIREHISDSKKF
QQWAFNAVQTQVAYKAEEYGIVVKTVNPQYTSQQCSKCGCTLEENRDGQHFECLDCSYTANSDYNAAKNVARKLALKLQRGQKSPTGGAFCQYALKSGTM
TVNASDVASDTYVSAERESTDKPTASAVGS
SQPEYTTFSLVYDKRAATYHRDHVSLATPNGRVECEYDLPENPEGTPHGEYLLNEDYSFSTSTVHYDSEADEFYLNAVMKQEFDVESPEKAEDSKVLGVD
CNVDDHIAVTSTGKFVGNADYLNHQRREFEKRRASLQQMGTRSAHLTYQRIGDRFGRWSRDSLHRVSKEIVQEACRHDCTHIAFENLERIREHISDSKKF
QQWAFNAVQTQVAYKAEEYGIVVKTVNPQYTSQQCSKCGCTLEENRDGQHFECLDCSYTANSDYNAAKNVARKLALKLQRGQKSPTGGAFCQYALKSGTM
TVNASDVASDTYVSAERESTDKPTASAVGS
Blast result :
Comments
ISHtu5 is 72% (TnpB) aa similar to ISHvo19.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank