ISHtu5

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001860 ND Haloterrigena turkmenica
Haloterrigena turkmenica DSM 5511
DNA section
IS Length : 1435 bp

Ends


Left end : AGCGGTAGCAGCGCGGAATCCCACGGCTTTAGCCGTGGGAGGAAGCGCGTCACTTGTGAGTACAACCACGCTTCTAGCCACGACTGACTCCCGAACATAG II struct. : Yes
Right end : ACAATGACCGTGAACGCCAGCGATGTGGCGTCCGACACCTACGTGTCGGCAGAACGGGAGTCCACTGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCCGAAGTGCCGTCACGAAGCCATACAAtgac

DNA sequence

AGCGGTAGCAGCGCGGAATCCCACGGCTTTAGCCGTGGGAGGAAGCGCGTCACTTGTGAGTACAACCACGCTTCTAGCCACGACTGACTCCCGAACATAG
TCAAAACTATTAATAAAGAAAATCGTCACAATGTGACGTATATGGCGTGGAAGGTCACACGCACTGTCCGAGTCCGACTCGAGGTGCCCGACGACCGCAA
GAGCGACCTCCACGCCACTAACGACCGCTTCCACTACTGCGCAAACCGCACCAGCGAGTGGGCGTGGCGCTACCCAGACGAGGACTGCATCACGAGCAAG
TCAAAAGCCGAAGACGCCCTCTACGAAGACCTCCGCGAGGAAACCGACTATCTCCACGCCAACCTCGTCCAGAAGGCCATCAAACGCGCCATCAAAGACA
TCGACAACGCGGTAGACAGGCTTGCAGACGCGGAAAACGTCAGCCAACCCGAGTACACGACGTTCAGTCTCGTCTACGACAAGCGTGCCGCCACGTACCA
CCGCGACCATGTCAGTCTCGCCACGCCCAACGGCCGTGTCGAATGCGAGTACGACCTCCCGGAGAACCCTGAAGGCACCCCTCACGGCGAGTACCTGCTC
AACGAGGATTACTCGTTCAGTACGAGCACCGTCCACTACGATAGCGAAGCCGACGAGTTCTACCTTAATGCGGTGATGAAGCAGGAATTCGACGTTGAGA
GTCCTGAGAAAGCCGAGGATTCGAAAGTCCTCGGCGTGGACTGTAACGTCGACGACCACATCGCCGTTACTTCAACGGGCAAGTTCGTCGGTAATGCGGA
CTACCTTAACCACCAGCGTCGTGAGTTCGAGAAACGGCGTGCTAGCCTCCAGCAAATGGGTACGCGTAGTGCCCATCTGACCTACCAGCGTATCGGTGAT
CGGTTCGGACGGTGGAGCCGTGACTCCCTCCATCGCGTATCCAAAGAAATCGTTCAAGAAGCCTGCCGCCACGACTGCACGCACATCGCATTCGAGAACT
TGGAACGGATTCGAGAGCACATCAGCGACAGCAAGAAGTTCCAGCAGTGGGCGTTCAACGCCGTCCAGACGCAGGTTGCGTACAAGGCCGAAGAGTATGG
TATCGTCGTGAAGACGGTGAACCCGCAGTACACGAGCCAGCAATGCTCGAAGTGTGGCTGTACGCTTGAGGAGAACCGCGATGGCCAACACTTCGAGTGT
CTTGACTGCTCCTATACGGCGAATTCGGATTACAATGCAGCGAAGAACGTAGCACGGAAGCTCGCGCTCAAGCTCCAGCGGGGGCAGAAGTCCCCCACTG
GAGGGGCGTTCTGTCAGTACGCCCTGAAGTCAGGGACAATGACCGTGAACGCCAGCGATGTGGCGTCCGACACCTACGTGTCGGCAGAACGGGAGTCCAC
TGACAAGCCCACCGCTTCAGCGGTGGGTAGCTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1293 bp430 aa1421434+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAWKVTRTVRVRLEVPDDRKSDLHATNDRFHYCANRTSEWAWRYPDEDCITSKSKAEDALYEDLREETDYLHANLVQKAIKRAIKDIDNAVDRLADAENV
SQPEYTTFSLVYDKRAATYHRDHVSLATPNGRVECEYDLPENPEGTPHGEYLLNEDYSFSTSTVHYDSEADEFYLNAVMKQEFDVESPEKAEDSKVLGVD
CNVDDHIAVTSTGKFVGNADYLNHQRREFEKRRASLQQMGTRSAHLTYQRIGDRFGRWSRDSLHRVSKEIVQEACRHDCTHIAFENLERIREHISDSKKF
QQWAFNAVQTQVAYKAEEYGIVVKTVNPQYTSQQCSKCGCTLEENRDGQHFECLDCSYTANSDYNAAKNVARKLALKLQRGQKSPTGGAFCQYALKSGTM
TVNASDVASDTYVSAERESTDKPTASAVGS

 

Blast result :
Comments
ISHtu5 is 72% (TnpB) aa similar to ISHvo19.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank