ISH39
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM774415 | ND | Halobacterium salinarum | Halobacterium salinarum R1 Halobacterium salinarum DSM 671 |
DNA section
IS Length : 1477 bp
Ends
Left end : GGAAGTGCGAGGAGAAAGCCCCGCCCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGAGCAGGGCCGGATATTCCACGCCAA II struct. : Yes
Right end : GAAACTGGTGCGTTCGCACCTCAAGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGCCCTATGTTG | TTAC | TGCTGCAGTCTC | TCAA |
DNA sequence
GGAAGTGCGAGGAGAAAGCCCCGCCCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGAGCAGGGCCGGATATTCCACGCCAA
TCCACACTATTAACTAATCTTATCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGAACCTACACTGCTTCCATACGGAACCAGCAACAGGTGTC
CGACGACCTTGATTCGCTCGGGTTCGCAGCCTCGAAACTCTGGAACGTCGGACGGTGGGTCTGTGACAGAGTGTGGTCTGAGATAGGCCACATTCCCAGT
CACACCGAACTCACCTCGTACCTCAAGTCGCACGAACGCTACGATGACCTGCATTCTCAGTCAAGTCAGCGAGTTCTCCAAGAACTCGCTGAGGCGTTCA
ACGGCTGGTACGGTAAACGACGCAACGGAGACACGAGAGCGAATCCGCCGAAGTACCGCAAGCACGGCGACGACCACCCACGAAGTACGGTCACGTTCAA
ACAGAAAGGCTTCAAGCTCGACACCCAGTACAACCGCGTCCGACTCAGTAAAGGGTCGAACCTGAAAGAATACTGGTCGGACTTCGTCCTCTGCGAGTAC
CAGATCCGTCCCGACGTTGACCTCTCCACCGTGGAGAACGTTCAACAAGTCAGATCCGTCTGGACTGGTGACGAGTGGGAACTGCACTTCGTCTGCAAGG
TCGAAGTCGAAGTGAGCGAATCGCCCGGCGAGAAGACAGTGGGTGTTGACCTCGGCATCAACAACTTCGCCGCACTCGCCTACGAAGACGGTCACAGCGA
ACTGTATCCGCTGAACTGCCTGAAGCAGGATGACTACTACTTCAGCAAGCGACTCGCTCAGTGTGACGATTCGGATTCCGAGCAGGCTACGCGACTGAAC
GAGAAGAAGTCGGCTCGCCGTACCCACTACTTCCACACTCTTTCAAAACACATCGTCCAGCGGTGTGTTGACGAGGGTGTTGGAACGATTGCCGTGGGTG
ATCTCTCCGGTGTCCGTGAGGATGAGGAGAACGGCGAGTCGAAGAACTGGGGCAAGCACGGCAACCTTGACCTGCACTCGTGGGCATTCGACCGTTTCAC
CGACCTCCTCGAATACAAGGCCGAGATGGAAGGCATCTCGGTTGAAGAAGTATCTGAGCGGGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGACGCGT
GACGCAAACCGTGTTGAGCGTGGGCTGTACGTCTGCGATTCGTGTGATACGGTGGCGAACGCGGACGTGAACGGTGCTGAGAACATTCGACAGAACGTAT
CTCCGAGTCCCGTCACGGATGGCGGTGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAATGAAACTGGTGCGTTCGCACCTCA
AGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
TCCACACTATTAACTAATCTTATCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGAACCTACACTGCTTCCATACGGAACCAGCAACAGGTGTC
CGACGACCTTGATTCGCTCGGGTTCGCAGCCTCGAAACTCTGGAACGTCGGACGGTGGGTCTGTGACAGAGTGTGGTCTGAGATAGGCCACATTCCCAGT
CACACCGAACTCACCTCGTACCTCAAGTCGCACGAACGCTACGATGACCTGCATTCTCAGTCAAGTCAGCGAGTTCTCCAAGAACTCGCTGAGGCGTTCA
ACGGCTGGTACGGTAAACGACGCAACGGAGACACGAGAGCGAATCCGCCGAAGTACCGCAAGCACGGCGACGACCACCCACGAAGTACGGTCACGTTCAA
ACAGAAAGGCTTCAAGCTCGACACCCAGTACAACCGCGTCCGACTCAGTAAAGGGTCGAACCTGAAAGAATACTGGTCGGACTTCGTCCTCTGCGAGTAC
CAGATCCGTCCCGACGTTGACCTCTCCACCGTGGAGAACGTTCAACAAGTCAGATCCGTCTGGACTGGTGACGAGTGGGAACTGCACTTCGTCTGCAAGG
TCGAAGTCGAAGTGAGCGAATCGCCCGGCGAGAAGACAGTGGGTGTTGACCTCGGCATCAACAACTTCGCCGCACTCGCCTACGAAGACGGTCACAGCGA
ACTGTATCCGCTGAACTGCCTGAAGCAGGATGACTACTACTTCAGCAAGCGACTCGCTCAGTGTGACGATTCGGATTCCGAGCAGGCTACGCGACTGAAC
GAGAAGAAGTCGGCTCGCCGTACCCACTACTTCCACACTCTTTCAAAACACATCGTCCAGCGGTGTGTTGACGAGGGTGTTGGAACGATTGCCGTGGGTG
ATCTCTCCGGTGTCCGTGAGGATGAGGAGAACGGCGAGTCGAAGAACTGGGGCAAGCACGGCAACCTTGACCTGCACTCGTGGGCATTCGACCGTTTCAC
CGACCTCCTCGAATACAAGGCCGAGATGGAAGGCATCTCGGTTGAAGAAGTATCTGAGCGGGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGACGCGT
GACGCAAACCGTGTTGAGCGTGGGCTGTACGTCTGCGATTCGTGTGATACGGTGGCGAACGCGGACGTGAACGGTGCTGAGAACATTCGACAGAACGTAT
CTCCGAGTCCCGTCACGGATGGCGGTGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAATGAAACTGGTGCGTTCGCACCTCA
AGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 139 | 1419 | + | No |
AG : TnpB
ORF sequence :
MAKQVVTRTYTASIRNQQQVSDDLDSLGFAASKLWNVGRWVCDRVWSEIGHIPSHTELTSYLKSHERYDDLHSQSSQRVLQELAEAFNGWYGKRRNGDTR
ANPPKYRKHGDDHPRSTVTFKQKGFKLDTQYNRVRLSKGSNLKEYWSDFVLCEYQIRPDVDLSTVENVQQVRSVWTGDEWELHFVCKVEVEVSESPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLAQCDDSDSEQATRLNEKKSARRTHYFHTLSKHIVQRCVDEGVGTIAVGDLSGVREDEENGE
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRTRDANRVERGLYVCDSCDTVANADVNGAENIRQNVSPSPVTDGGDRSN
GWLAQPSTFLFDNETGAFAPQEQATS
ANPPKYRKHGDDHPRSTVTFKQKGFKLDTQYNRVRLSKGSNLKEYWSDFVLCEYQIRPDVDLSTVENVQQVRSVWTGDEWELHFVCKVEVEVSESPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLAQCDDSDSEQATRLNEKKSARRTHYFHTLSKHIVQRCVDEGVGTIAVGDLSGVREDEENGE
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRTRDANRVERGLYVCDSCDTVANADVNGAENIRQNVSPSPVTDGGDRSN
GWLAQPSTFLFDNETGAFAPQEQATS
Blast result :
Comments
ISH39 is 96% (TnpB) aa similar to ISHhu7.
References
1] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346