ISH39

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM774415 ND Halobacterium salinarum
Halobacterium salinarum R1
Halobacterium salinarum DSM 671
DNA section
IS Length : 1477 bp

Ends


Left end : GGAAGTGCGAGGAGAAAGCCCCGCCCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGAGCAGGGCCGGATATTCCACGCCAA II struct. : Yes
Right end : GAAACTGGTGCGTTCGCACCTCAAGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGCCCTATGTTGTTACTGCTGCAGTCTCTCAA

DNA sequence

GGAAGTGCGAGGAGAAAGCCCCGCCCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGAGCAGGGCCGGATATTCCACGCCAA
TCCACACTATTAACTAATCTTATCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGAACCTACACTGCTTCCATACGGAACCAGCAACAGGTGTC
CGACGACCTTGATTCGCTCGGGTTCGCAGCCTCGAAACTCTGGAACGTCGGACGGTGGGTCTGTGACAGAGTGTGGTCTGAGATAGGCCACATTCCCAGT
CACACCGAACTCACCTCGTACCTCAAGTCGCACGAACGCTACGATGACCTGCATTCTCAGTCAAGTCAGCGAGTTCTCCAAGAACTCGCTGAGGCGTTCA
ACGGCTGGTACGGTAAACGACGCAACGGAGACACGAGAGCGAATCCGCCGAAGTACCGCAAGCACGGCGACGACCACCCACGAAGTACGGTCACGTTCAA
ACAGAAAGGCTTCAAGCTCGACACCCAGTACAACCGCGTCCGACTCAGTAAAGGGTCGAACCTGAAAGAATACTGGTCGGACTTCGTCCTCTGCGAGTAC
CAGATCCGTCCCGACGTTGACCTCTCCACCGTGGAGAACGTTCAACAAGTCAGATCCGTCTGGACTGGTGACGAGTGGGAACTGCACTTCGTCTGCAAGG
TCGAAGTCGAAGTGAGCGAATCGCCCGGCGAGAAGACAGTGGGTGTTGACCTCGGCATCAACAACTTCGCCGCACTCGCCTACGAAGACGGTCACAGCGA
ACTGTATCCGCTGAACTGCCTGAAGCAGGATGACTACTACTTCAGCAAGCGACTCGCTCAGTGTGACGATTCGGATTCCGAGCAGGCTACGCGACTGAAC
GAGAAGAAGTCGGCTCGCCGTACCCACTACTTCCACACTCTTTCAAAACACATCGTCCAGCGGTGTGTTGACGAGGGTGTTGGAACGATTGCCGTGGGTG
ATCTCTCCGGTGTCCGTGAGGATGAGGAGAACGGCGAGTCGAAGAACTGGGGCAAGCACGGCAACCTTGACCTGCACTCGTGGGCATTCGACCGTTTCAC
CGACCTCCTCGAATACAAGGCCGAGATGGAAGGCATCTCGGTTGAAGAAGTATCTGAGCGGGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGACGCGT
GACGCAAACCGTGTTGAGCGTGGGCTGTACGTCTGCGATTCGTGTGATACGGTGGCGAACGCGGACGTGAACGGTGCTGAGAACATTCGACAGAACGTAT
CTCCGAGTCCCGTCACGGATGGCGGTGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAATGAAACTGGTGCGTTCGCACCTCA
AGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa1391419+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAKQVVTRTYTASIRNQQQVSDDLDSLGFAASKLWNVGRWVCDRVWSEIGHIPSHTELTSYLKSHERYDDLHSQSSQRVLQELAEAFNGWYGKRRNGDTR
ANPPKYRKHGDDHPRSTVTFKQKGFKLDTQYNRVRLSKGSNLKEYWSDFVLCEYQIRPDVDLSTVENVQQVRSVWTGDEWELHFVCKVEVEVSESPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLAQCDDSDSEQATRLNEKKSARRTHYFHTLSKHIVQRCVDEGVGTIAVGDLSGVREDEENGE
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRTRDANRVERGLYVCDSCDTVANADVNGAENIRQNVSPSPVTDGGDRSN
GWLAQPSTFLFDNETGAFAPQEQATS

 

Blast result :
Comments
ISH39 is 96% (TnpB) aa similar to ISHhu7.
References
1] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346